{ "bcoid": "GLY_000912", "title": "Pig Protein Alternative Name (UniProtKB)", "description": "The Pig Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for pig [taxid:9823] ...", "filename": "pig_protein_altnames.csv", "filetype": "csv", "categories": { "species": [ "Sus scrofa" ], "molecule": [ "Protein" ], "tag": [ "Protein Alternative Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "I3LT93-1...", "Hydroxymethy..." ], [ "I3LT93-1...", "Uroporphyrin..." ] ], "headers": [ "uniprotkb_ca...", "alternative_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "alternative_name_full" }, { "type": "string", "label": "alternative_name_short" }, { "type": "string", "label": "ec_name" } ], [ "I3LT93-1", "Hydroxymethylbilane hydrolyase [cyclizing]", "", "" ], [ "I3LT93-1", "Uroporphyrinogen-III cosynthase", "", "" ], [ "F1RTM6-1", "Nuclear receptor subfamily 3 group C member 4", "", "" ], [ "F1RTM6-1", "Dihydrotestosterone receptor", "", "" ], [ "C0JPM4-1", "Tissue inhibitor of metalloproteinases 2", "", "" ], [ "O97676-1", "Transcription factor SREBF1", "", "" ], [ "O97676-1", "Adipocyte determination and differentiation-dependent factor 1", "", "" ], [ "O97676-1", "Sterol regulatory element-binding transcription factor 1", "", "" ], [ "P01232-1", "Luteinizing hormone subunit beta", "LH-B", "" ], [ "P01232-1", "Luteinizing hormone subunit beta", "LSH-B", "" ], [ "P01232-1", "Luteinizing hormone subunit beta", "LSH-beta", "" ], [ "I3LHP0-1", "S-adenosyl-L-methionine:L-histidine 3-amino-3-carboxypropyltransferase 1", "", "" ], [ "I3LHP0-1", "Diphthamide biosynthesis protein 1", "", "" ], [ "I3LHP0-1", "Diphtheria toxin resistance protein 1", "", "" ], [ "P81693-1", "Low molecular weight cytosolic acid phosphatase", "", "3.1.3.2" ], [ "B1NI70-1", "GTP:AMP phosphotransferase AK4", "", "" ], [ "B1NI70-1", "Adenylate kinase 3-like", "", "" ], [ "F1SBQ3-1", "Solute carrier family 16 member 1", "", "" ], [ "A0A8W4FL27-1", "60S ribosomal protein L18a", "", "" ], [ "A0A480JAZ9-1", "ELOVL fatty acid elongase 7", "ELOVL FA elongase 7", "" ], [ "A0A480JAZ9-1", "Very long chain 3-oxoacyl-CoA synthase 7", "", "" ], [ "A0A480JAZ9-1", "3-keto acyl-CoA synthase ELOVL7", "", "" ], [ "A0A480JAZ9-1", "Very long chain 3-ketoacyl-CoA synthase 7", "", "" ], [ "I3LU89-1", "Chromatin-modifying protein 1a", "", "" ], [ "Q2HYU1-1", "Sarcomeric mitochondrial creatine kinase", "", "" ], [ "Q2HYU2-1", "Phosphofructo-1-kinase isozyme A", "PFK-A", "" ], [ "Q2HYU2-1", "6-phosphofructokinase type A", "", "" ], [ "Q2HYU2-1", "Phosphohexokinase", "", "" ], [ "A0A8W4F8J3-1", "Myo-inositol oxygenase", "", "" ], [ "A0A287BQ22-1", "6-O-methylguanine-DNA methyltransferase", "", "" ], [ "A0A287BQ22-1", "O-6-methylguanine-DNA-alkyltransferase", "", "" ], [ "Q9MYN5-1", "CDK2-associated dual-specificity phosphatase", "", "" ], [ "Q9MYN5-1", "Kinase-associated phosphatase", "", "" ], [ "A0A5G2QV47-1", "Forkhead-associated domain histidine triad-like protein", "", "" ], [ "A0A4X1TFA2-1", "Enhancer of yellow 2 transcription factor homolog", "", "" ], [ "I3LMQ0-1", "PAS-4", "", "" ], [ "I3LMQ0-1", "PAS IV", "", "" ], [ "I3LMQ0-1", "Glycoprotein IIIb", "", "" ], [ "I3LMQ0-1", "Platelet glycoprotein IV", "", "" ], [ "A0A287AHC2-1", "Glucosamine-6-phosphate deaminase", "", "" ], [ "F1SAJ5-1", "DEAD box protein 6", "", "" ], [ "P00889-1", "Citrate (Si)-synthase", "", "" ], [ "O46409-1", "Apolipoprotein A4", "", "" ], [ "A0A8W4FK85-1", "Gamma-ECS", "", "" ], [ "A0A8W4FK85-1", "Gamma-glutamylcysteine synthetase", "", "" ], [ "P16293-1", "Christmas factor", "", "" ], [ "Q6RHW2-1", "Hyaluronoglucosaminidase-3", "", "" ], [ "Q6RHW4-1", "Hyaluronoglucosaminidase-1", "", "" ], [ "A0A4X1VPB2-1", "Protein-UDP acetylgalactosaminyltransferase", "", "" ], [ "A0A286ZLF4-1", "Solute carrier family 38 member 7", "", "" ], [ "P79324-1", "60S ribosomal protein L15", "", "" ], [ "Q9BDJ5-1", "Vascular non-inflammatory molecule 1", "Vanin-1", "" ], [ "Q9BDJ5-1", "Pantetheine hydrolase", "", "" ], [ "A0A8W4F9M6-1", "Cytochrome c oxidase polypeptide VIIc", "", "" ], [ "P80895-1", "Protein-beta-aspartate methyltransferase", "", "" ], [ "P80895-1", "L-isoaspartyl protein carboxyl methyltransferase", "", "" ], [ "P80895-1", "Protein L-isoaspartyl/D-aspartyl methyltransferase", "", "" ], [ "A0A4X1U3N9-1", "60S ribosomal protein L5", "", "" ], [ "F1SIB1-1", "Coagulation factor II", "", "" ], [ "A0A8W4FKW4-1", "Complex III subunit VII", "", "" ], [ "A0A8W4FKW4-1", "Ubiquinol-cytochrome c reductase complex 14 kDa protein", "", "" ], [ "A0A4X1U981-1", "Protein snail homolog 2", "", "" ], [ "A0A8W4FLW3-1", "Y-box transcription factor", "", "" ], [ "A0A287AQ52-1", "tRNA selenocysteine-associated protein 1", "", "" ], [ "A1XQT4-1", "Cytochrome c oxidase polypeptide VIII", "", "" ], [ "Q7M2W6-1", "Alpha(B)-crystallin", "", "" ], [ "P63053-1", "60S ribosomal protein L40", "", "" ], [ "P63053-1", "CEP52", "", "" ], [ "P63053-1", "Ubiquitin A-52 residue ribosomal protein fusion product 1", "", "" ], [ "A0A287AZK8-1", "Myc-associated factor X", "", "" ], [ "A0A287AZK1-1", "Myosin heavy chain 2", "", "" ], [ "A0A287AZK1-1", "Myosin heavy chain, skeletal muscle, adult 2", "", "" ], [ "A0A287AZK1-1", "Myosin heavy chain 2a", "", "" ], [ "A0A287B896-1", "SET domain-containing protein 2", "", "" ], [ "A0A287B894-1", "Membrane protein DAP10", "", "" ], [ "A0A287B894-1", "DNAX-activation protein 10", "", "" ], [ "A0A287ADF0-1", "Platelet-derived growth factor B chain", "", "" ], [ "A0A287ADF0-1", "Platelet-derived growth factor beta polypeptide", "", "" ], [ "A0A287ADF0-1", "PDGF-2", "", "" ], [ "F2Z5T8-1", "Preimplantation protein 3", "", "" ], [ "F2Z5T8-1", "Mob1 homolog 3", "", "" ], [ "F2Z5T8-1", "Mps one binder kinase activator-like 3", "", "" ], [ "P56471-1", "Isocitric dehydrogenase subunit alpha", "", "" ], [ "P56471-1", "NAD(+)-specific ICDH subunit alpha", "", "" ] ] }, "readme": "Name\n - Pig Protein Alternative Name (UniProtKB)\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - \n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Pig Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for pig [taxid:9823] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB alternative names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sus_scrofa.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-sus_scrofa.nt\n Output Subdomain\n Name: pig_protein_altnames.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_altnames.csv\n Name: pig_protein_altnames.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_altnames.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"3081\"\n Name: \"alternative_name_full\"\n Description: \"Alternative full name of the protein in the UniProtKB database\"\n Unique Values: \"4390\"\n Name: \"alternative_name_short\"\n Description: \"Alternative short name of the protein in UniProtKB database\"\n Unique Values: \"739\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"90\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_altnames.csv" }