{ "bcoid": "GLY_000910", "title": "Pig UniProtKB Xref OrthoDB", "description": "The Pig UniProtKB Xref OrthoDB contains pig [taxid:9823] UniProtKB canonical accessions cross-referenced ...", "filename": "pig_protein_xref_orthodb.csv", "filetype": "csv", "categories": { "species": [ "Sus scrofa" ], "molecule": [ "Protein" ], "tag": [ "Orthodb cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A0A287BN22-1...", "protein_xref..." ], [ "F1RWM0-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "A0A287BN22-1", "protein_xref_orthodb", "2910543at2759", "" ], [ "F1RWM0-1", "protein_xref_orthodb", "164023at2759", "" ], [ "A0A4X1U326-1", "protein_xref_orthodb", "90294at2759", "" ], [ "A0A5G2Q7W2-1", "protein_xref_orthodb", "103277at2759", "" ], [ "I3LQS2-1", "protein_xref_orthodb", "647at2759", "" ], [ "K7GSF4-1", "protein_xref_orthodb", "2995592at2759", "" ], [ "F1RTM0-1", "protein_xref_orthodb", "4224143at2759", "" ], [ "F1RTM6-1", "protein_xref_orthodb", "5351241at2759", "" ], [ "A0A5G2QM40-1", "protein_xref_orthodb", "74668at2759", "" ], [ "A0A5G2QVU6-1", "protein_xref_orthodb", "5324090at2759", "" ], [ "I3L7Y8-1", "protein_xref_orthodb", "2900079at2759", "" ], [ "C0JPM4-1", "protein_xref_orthodb", "5403389at2759", "" ], [ "O97676-1", "protein_xref_orthodb", "3668492at2759", "" ], [ "P50131-1", "protein_xref_orthodb", "5355693at2759", "" ], [ "P01232-1", "protein_xref_orthodb", "2945053at2759", "" ], [ "P01238-1", "protein_xref_orthodb", "4765458at2759", "" ], [ "F1SUD9-1", "protein_xref_orthodb", "8233at2759", "" ], [ "A0A286ZVX0-1", "protein_xref_orthodb", "4018190at2759", "" ], [ "F1SUD5-1", "protein_xref_orthodb", "2784357at2759", "" ], [ "I3LHP2-1", "protein_xref_orthodb", "4670340at2759", "" ], [ "I3LHP5-1", "protein_xref_orthodb", "5474815at2759", "" ], [ "A0A287BFE7-1", "protein_xref_orthodb", "7676at2759", "" ], [ "A0A286ZNE1-1", "protein_xref_orthodb", "5401587at2759", "" ], [ "A0A286ZNE4-1", "protein_xref_orthodb", "5351507at2759", "" ], [ "F1SKE6-1", "protein_xref_orthodb", "9814at2759", "" ], [ "F1SKE7-1", "protein_xref_orthodb", "5355450at2759", "" ], [ "Q8MJS1-1", "protein_xref_orthodb", "5350190at2759", "" ], [ "A0A4X1VBA4-1", "protein_xref_orthodb", "226459at2759", "" ], [ "A0A4X1W748-1", "protein_xref_orthodb", "5403845at2759", "" ], [ "A0A4X1UGW7-1", "protein_xref_orthodb", "5403994at2759", "" ], [ "A0A8D1DX92-1", "protein_xref_orthodb", "1333327at2759", "" ], [ "P81693-1", "protein_xref_orthodb", "5470890at2759", "" ], [ "C1JEX7-1", "protein_xref_orthodb", "5483063at2759", "" ], [ "A0A8D1D4H1-1", "protein_xref_orthodb", "5401401at2759", "" ], [ "A0A287BF73-1", "protein_xref_orthodb", "2912088at2759", "" ], [ "A0A287BF71-1", "protein_xref_orthodb", "2904077at2759", "" ], [ "B1NI70-1", "protein_xref_orthodb", "167111at2759", "" ], [ "A0A287BF79-1", "protein_xref_orthodb", "25293at2759", "" ], [ "F1SBQ0-1", "protein_xref_orthodb", "1450097at2759", "" ], [ "A0A5G2QU61-1", "protein_xref_orthodb", "4575659at2759", "" ], [ "A0A4X1SQM6-1", "protein_xref_orthodb", "275126at2759", "" ], [ "A0A480JAZ9-1", "protein_xref_orthodb", "168669at2759", "" ], [ "F1RU42-1", "protein_xref_orthodb", "3674416at2759", "" ], [ "A0A480NH74-1", "protein_xref_orthodb", "158564at2759", "" ], [ "I3LU89-1", "protein_xref_orthodb", "260657at2759", "" ], [ "A0A4X1SFI9-1", "protein_xref_orthodb", "121154at2759", "" ], [ "A0A287A663-1", "protein_xref_orthodb", "5395454at2759", "" ], [ "A0A286ZL52-1", "protein_xref_orthodb", "5390357at2759", "" ], [ "A0A286ZL51-1", "protein_xref_orthodb", "5477767at2759", "" ], [ "A0A286ZL58-1", "protein_xref_orthodb", "2903256at2759", "" ], [ "F1SEX4-1", "protein_xref_orthodb", "5405606at2759", "" ], [ "F1SEX6-1", "protein_xref_orthodb", "2898029at2759", "" ], [ "A0A5G2QNX5-1", "protein_xref_orthodb", "4539697at2759", "" ], [ "A0A4X1VD60-1", "protein_xref_orthodb", "397100at2759", "" ], [ "A0A480Z1K0-1", "protein_xref_orthodb", "1060790at2759", "" ], [ "Q2HYU1-1", "protein_xref_orthodb", "35839at2759", "" ], [ "Q2HYU2-1", "protein_xref_orthodb", "374214at2759", "" ], [ "A0A287BMC7-1", "protein_xref_orthodb", "5343970at2759", "" ], [ "I3LSX1-1", "protein_xref_orthodb", "4629641at2759", "" ], [ "A0A480QFR5-1", "protein_xref_orthodb", "2905251at2759", "" ], [ "A0A4X1UGJ1-1", "protein_xref_orthodb", "332937at2759", "" ], [ "A0A287ATT0-1", "protein_xref_orthodb", "76644at2759", "" ], [ "A0A287BLC7-1", "protein_xref_orthodb", "443463at2759", "" ], [ "A0A4X1W654-1", "protein_xref_orthodb", "2912019at2759", "" ], [ "A0A287BH18-1", "protein_xref_orthodb", "5260927at2759", "" ], [ "F1RFE3-1", "protein_xref_orthodb", "5472060at2759", "" ], [ "I3LFE6-1", "protein_xref_orthodb", "3601817at2759", "" ], [ "F1RQT0-1", "protein_xref_orthodb", "3665923at2759", "" ], [ "A0A287AL92-1", "protein_xref_orthodb", "4519459at2759", "" ], [ "F1RUQ7-1", "protein_xref_orthodb", "5341978at2759", "" ], [ "A0A5G2R9S8-1", "protein_xref_orthodb", "1116432at2759", "" ], [ "A0A480SN06-1", "protein_xref_orthodb", "5405528at2759", "" ], [ "F1S890-1", "protein_xref_orthodb", "5405700at2759", "" ], [ "A0A287BQ26-1", "protein_xref_orthodb", "5401587at2759", "" ], [ "A0A287BQ24-1", "protein_xref_orthodb", "5323597at2759", "" ], [ "A0A5G2R924-1", "protein_xref_orthodb", "2872403at2759", "" ], [ "Q9MYN5-1", "protein_xref_orthodb", "5479521at2759", "" ], [ "A0A287A9G3-1", "protein_xref_orthodb", "2897309at2759", "" ], [ "A0A4X1TFA2-1", "protein_xref_orthodb", "5487980at2759", "" ], [ "A0A287A7A4-1", "protein_xref_orthodb", "5262142at2759", "" ], [ "A0A4X1THK7-1", "protein_xref_orthodb", "5344399at2759", "" ], [ "I3LMQ0-1", "protein_xref_orthodb", "315994at2759", "" ], [ "I3LMQ4-1", "protein_xref_orthodb", "4898048at2759", "" ], [ "A0A287BPZ9-1", "protein_xref_orthodb", "5405062at2759", "" ] ] }, "readme": "Name\n - Pig UniProtKB Xref OrthoDB\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - \n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Pig UniProtKB Xref OrthoDB contains pig [taxid:9823] UniProtKB canonical accessions cross-referenced to OrthoDB database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - OrthoDB is a comprehensive catalog of orthologs, i.e. descendants from a single gene of the last common ancestor of a specific phylogeny radiation termed level-of-orthology.\n\nDescription Domain\n Keywords\n - orthologs\n - OrthoDB\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OrthoDB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sus_scrofa.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-sus_scrofa.nt\n Output Subdomain\n Name: pig_protein_xref_orthodb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_orthodb.csv\n Name: pig_protein_xref_orthodb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_orthodb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"11226\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"6748\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_xref_orthodb.csv" }