{ "bcoid": "GLY_000909", "title": "Pig Gene Symbols (UniProtKB)", "description": "The Pig Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for pig [taxid:9823] proteins. ...", "filename": "pig_protein_genenames_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Sus scrofa" ], "molecule": [ "Protein" ], "tag": [ "Gene Symbols" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A0A287BQ89-1...", "CIAO2A..." ], [ "A0A4X1U3C8-1...", "CTSC..." ] ], "headers": [ "uniprotkb_ca...", "gene_symbol_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "gene_symbol_recommended" }, { "type": "string", "label": "gene_symbol_alternative" }, { "type": "string", "label": "orf_name" } ], [ "A0A287BQ89-1", "CIAO2A", "", "" ], [ "A0A4X1U3C8-1", "CTSC", "", "" ], [ "A0A287BSN5-1", "ZNF446", "", "" ], [ "F1RV90-1", "MAK", "", "" ], [ "F1S708-1", "TNN", "", "" ], [ "A0A8W4FMS3-1", "ARHGAP26", "", "" ], [ "I3L6J1-1", "RTN1", "", "" ], [ "F1SBU6-1", "CATSPERD", "", "" ], [ "I3L7V6-1", "PODXL2", "", "" ], [ "A0A5G2RAB5-1", "TXNRD1", "", "" ], [ "F1RY43-1", "PDP1", "", "" ], [ "A0A287BN22-1", "BTBD10", "", "" ], [ "A0A287A8B3-1", "CALCB", "", "" ], [ "A0A287BN27-1", "PABIR2", "", "" ], [ "A0A5G2R0S0-1", "COG5", "", "" ], [ "A0A286ZXT3-1", "PI4KA", "", "" ], [ "A0A4X1VDU3-1", "ATG5", "", "" ], [ "A0A287A5F7-1", "PPP2R1B", "", "" ], [ "F1RWM0-1", "ZC2HC1A", "", "" ], [ "A0A8D0PQ51-1", "FAM162A", "", "" ], [ "I3L942-1", "RPTOR", "", "" ], [ "D7PF45-1", "INPPL1", "SHIP2", "" ], [ "A0A4X1U326-1", "RAB38", "", "" ], [ "A0A5G2Q7W2-1", "CLIC5", "", "" ], [ "A0A287AZX1-1", "KLK11", "", "" ], [ "A0A287BPN5-1", "UROC1", "", "" ], [ "A0A287BAF3-1", "ADSS1", "ADSSL1", "" ], [ "F1SRD2-1", "ANO10", "", "" ], [ "A0A287BT51-1", "SVIL", "", "" ], [ "A0A287BAJ5-1", "EPHA7", "", "" ], [ "A0A287BDN2-1", "SPTBN1", "", "" ], [ "I3L8Z7-1", "ALG8", "", "" ], [ "A0A8W4FHV2-1", "PLA2G7", "", "" ], [ "A0A287AM68-1", "TLK2", "", "" ], [ "F1RGZ6-1", "ZNF200", "", "" ], [ "F1S1B2-1", "MPZ", "", "" ], [ "A0A8W4FJE9-1", "KRTAP6-2", "", "" ], [ "F1SU62-1", "ZNF2", "", "" ], [ "A0A8D1TIK8-1", "C4H8orf33", "", "" ], [ "A0A287ANF4-1", "TOGARAM1", "", "" ], [ "A0A287ANF5-1", "AVEN", "", "" ], [ "A0A287BI43-1", "MRPL39", "", "" ], [ "A0A287BRL0-1", "CWC15", "", "" ], [ "A0A287AN23-1", "CLIC6", "", "" ], [ "F1S5C5-1", "NCAPG", "", "" ], [ "A0A5G2RE27-1", "LOC106504368", "", "" ], [ "A0A287ANF8-1", "ATPAF1", "", "" ], [ "A0A287ANF9-1", "PTGS1", "", "" ], [ "F1RY37-1", "RUNX1T1", "", "" ], [ "A0A287B9Q3-1", "CNTN1", "", "" ], [ "A0A287AGD8-1", "NTNG1", "", "" ], [ "I3LQS2-1", "NT5C", "", "" ], [ "Q6RVA9-1", "CAV1", "", "" ], [ "A0A287AE97-1", "PIGK", "", "" ], [ "P05383-1", "PRKACB", "", "" ], [ "A0A5G2QFB4-1", "SLC27A5", "", "" ], [ "A0A287BS41-1", "TGFB2", "", "" ], [ "K7GSF4-1", "FMR1", "", "" ], [ "I3LTC2-1", "FCSK", "", "" ], [ "F1S414-1", "INPP5F", "", "" ], [ "A0A287A1S5-1", "ARHGEF18", "", "" ], [ "A0A5G2RE32-1", "NRP1", "", "" ], [ "F1RTM0-1", "LOC100522569", "", "" ], [ "A0A5G2RCT6-1", "MIPEP", "", "" ], [ "F1RTM6-1", "AR", "", "" ], [ "F1RPC4-1", "INPP5J", "", "" ], [ "A0A287A1X6-1", "NR1H4", "", "" ], [ "F1SQP4-1", "NDUFA12", "", "" ], [ "A0A286ZWJ2-1", "EEF1E1", "", "" ], [ "A0A5G2QM40-1", "CUX1", "", "" ], [ "F1S7I3-1", "DEFB115", "", "" ], [ "A0A287A8B9-1", "PATE2", "", "" ], [ "A0A8W4FCQ5-1", "H1-2", "", "" ], [ "F1SI44-1", "TTBK2", "", "" ], [ "B6ICU5-1", "PPP1R11", "", "" ], [ "F1SEM2-1", "RPN2", "", "" ], [ "F1SD91-1", "CCDC88C", "", "" ], [ "A0A8W4FCQ3-1", "ANKRD39", "", "" ], [ "F1S8D4-1", "WDR77", "", "" ], [ "A0A287ATT8-1", "LOC100514973", "", "" ], [ "A0A287ATT9-1", "PTTG1IP", "", "" ], [ "A0A286ZKZ5-1", "PPP6R2", "", "" ], [ "F1SJI8-1", "C1H15orf61", "C15orf61", "" ], [ "C0JPM4-1", "TIMP2", "TIMP-2", "" ] ] }, "readme": "Name\n - Pig Gene Symbols (UniProtKB)\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - \n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Pig Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for pig [taxid:9823] proteins. It contains the recommended gene symbol, alternative gene symbol and ORF gene names assigned by the Gene Name Nomenclature commitees. (for more info - https://www.uniprot.org/help/gene_name). The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB gene symbols for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sus_scrofa.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-sus_scrofa.nt\n Output Subdomain\n Name: pig_protein_genenames_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_genenames_uniprotkb.csv\n Name: pig_protein_genenames_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_genenames_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"18820\"\n Name: \"gene_symbol_recommended\"\n Description: \"\"The official gene symbol recommended by the Gene Nomenclature Committees like HGNC\"\n Unique Values: \"18029\"\n Name: \"gene_symbol_alternative\"\n Description: \"The alternative gene symbols to the recommended recommeded gene symbols in UniProtKB\"\n Unique Values: \"1393\"\n Name: \"orf_name\"\n Description: \"\"The orf name as a gene name are the names that are temporarily attributed to an open reading frame (ORF) by a sequencing project. This name can be based on a cosmid numbering system\"\n Unique Values: \"61\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_genenames_uniprotkb.csv" }