{ "bcoid": "GLY_000907", "title": "Pig Protein Information (UniProtKB)", "description": "The Pig Protein Information dataset contains pig [taxid:9823] UniProtKB canonical accessions with their ...", "filename": "pig_protein_info_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Sus scrofa" ], "molecule": [ "Protein" ], "tag": [ "Protein Information" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A0A8D1F6B9-1...", "A0A8D1F6B9_P..." ], [ "A0A5G2Q8U0-1...", "A0A5G2Q8U0_P..." ] ], "headers": [ "uniprotkb_ca...", "uniprotkb_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "uniprotkb_id" }, { "type": "string", "label": "uniprotkb_protein_mass" }, { "type": "string", "label": "uniprotkb_protein_length" } ], [ "A0A8D1F6B9-1", "A0A8D1F6B9_PIG", "35387", "299" ], [ "A0A5G2Q8U0-1", "A0A5G2Q8U0_PIG", "80749", "747" ], [ "A0A8W4FGT7-1", "A0A8W4FGT7_PIG", "36174", "319" ], [ "A0A5G2QNS8-1", "A0A5G2QNS8_PIG", "71297", "648" ], [ "A0A5G2R322-1", "A0A5G2R322_PIG", "34997", "312" ], [ "F1SS51-1", "F1SS51_PIG", "44405", "400" ], [ "A0A8W4FN52-1", "A0A8W4FN52_PIG", "8575", "73" ], [ "A0A5G2QIG2-1", "A0A5G2QIG2_PIG", "21206", "181" ], [ "I3LJ21-1", "I3LJ21_PIG", "18640", "167" ], [ "A0A287BFN8-1", "A0A287BFN8_PIG", "35167", "308" ], [ "F1RH52-1", "F1RH52_PIG", "23277", "208" ], [ "A0A287AGS3-1", "A0A287AGS3_PIG", "152472", "1372" ], [ "A0A8W4FB56-1", "A0A8W4FB56_PIG", "11816", "99" ], [ "A0A5G2QVR3-1", "A0A5G2QVR3_PIG", "47479", "408" ], [ "A0A287AZ25-1", "A0A287AZ25_PIG", "68316", "639" ], [ "A0A480IRX4-1", "A0A480IRX4_PIG", "151095", "1370" ], [ "A0A4X1V5G1-1", "A0A4X1V5G1_PIG", "54832", "507" ], [ "A0A287B624-1", "A0A287B624_PIG", "171002", "1560" ], [ "A0A287A0Y8-1", "A0A287A0Y8_PIG", "14381", "124" ], [ "A0A8W4FGW0-1", "A0A8W4FGW0_PIG", "83395", "715" ], [ "A0A5G2QJG9-1", "A0A5G2QJG9_PIG", "113549", "1018" ], [ "A0A287B8Z3-1", "A0A287B8Z3_PIG", "52177", "476" ], [ "F1RRU0-1", "F1RRU0_PIG", "54284", "472" ], [ "A0A5G2QW52-1", "A0A5G2QW52_PIG", "75437", "693" ], [ "A0A5K1UZ28-1", "A0A5K1UZ28_PIG", "19420", "174" ], [ "F1RR18-1", "F1RR18_PIG", "34206", "304" ], [ "A0A5G2QZP6-1", "A0A5G2QZP6_PIG", "286135", "2614" ], [ "F1SMF8-1", "F1SMF8_PIG", "100251", "897" ], [ "F1SHJ3-1", "F1SHJ3_PIG", "134179", "1177" ], [ "A0A8W4FFA6-1", "A0A8W4FFA6_PIG", "11281", "101" ], [ "F1SEM9-1", "F1SEM9_PIG", "183282", "1659" ], [ "A0A8W4FL82-1", "A0A8W4FL82_PIG", "40747", "349" ], [ "A0A287AL86-1", "A0A287AL86_PIG", "35770", "315" ], [ "A0A8W4FIT4-1", "A0A8W4FIT4_PIG", "115965", "989" ], [ "B1NI70-1", "B1NI70_PIG", "25291", "223" ], [ "A0A287BRG8-1", "A0A287BRG8_PIG", "24582", "226" ], [ "I3LKF2-1", "I3LKF2_PIG", "72325", "639" ], [ "A0A5G2RC32-1", "A0A5G2RC32_PIG", "38170", "333" ], [ "F1SJD9-1", "F1SJD9_PIG", "52865", "473" ], [ "F1SEZ2-1", "F1SEZ2_PIG", "20666", "182" ], [ "P15468-1", "RNAS4_PIG", "16863", "147" ], [ "A0A2C9F370-1", "A0A2C9F370_PIG", "19525", "169" ], [ "O02799-1", "STAT2_PIG", "99061", "864" ], [ "F1SLE1-1", "F1SLE1_PIG", "30825", "288" ], [ "A0A5G2QHP3-1", "A0A5G2QHP3_PIG", "35499", "335" ], [ "A0A286ZLI2-1", "A0A286ZLI2_PIG", "133060", "1154" ], [ "I3LHD9-1", "I3LHD9_PIG", "119282", "1111" ], [ "A0A8W4F6F7-1", "A0A8W4F6F7_PIG", "35936", "322" ], [ "A0A287AHA7-1", "A0A287AHA7_PIG", "56968", "503" ], [ "A0A5G2RG64-1", "A0A5G2RG64_PIG", "73451", "638" ], [ "A0A5G2QSG9-1", "A0A5G2QSG9_PIG", "53526", "498" ], [ "A0A8W4FGL1-1", "A0A8W4FGL1_PIG", "16952", "146" ], [ "A0A287A5G4-1", "A0A287A5G4_PIG", "29849", "276" ], [ "A0A8W4FMC4-1", "A0A8W4FMC4_PIG", "34557", "295" ], [ "F1S681-1", "F1S681_PIG", "43001", "390" ], [ "F1SGY7-1", "F1SGY7_PIG", "80492", "702" ], [ "A0A286ZVM4-1", "A0A286ZVM4_PIG", "194647", "1732" ], [ "F1RRM9-1", "F1RRM9_PIG", "51828", "512" ], [ "A0A480VC90-1", "A0A480VC90_PIG", "29877", "261" ], [ "A0A287B1N9-1", "A0A287B1N9_PIG", "47237", "450" ], [ "A0A286ZX92-1", "A0A286ZX92_PIG", "34742", "307" ], [ "A0A8W4FJF0-1", "A0A8W4FJF0_PIG", "33555", "305" ], [ "A0A8D0NRX6-1", "A0A8D0NRX6_PIG", "12645", "109" ], [ "A0A287A597-1", "A0A287A597_PIG", "97426", "855" ], [ "A0A287A6D5-1", "A0A287A6D5_PIG", "160062", "1410" ], [ "A0A480DI89-1", "A0A480DI89_PIG", "96640", "842" ], [ "A0A4X1SS77-1", "A0A4X1SS77_PIG", "21955", "201" ], [ "F1S348-1", "F1S348_PIG", "71806", "647" ], [ "F1RSY9-1", "F1RSY9_PIG", "65431", "579" ], [ "I3LT34-1", "I3LT34_PIG", "26225", "238" ], [ "I3LB98-1", "I3LB98_PIG", "33113", "295" ], [ "F1RYN4-1", "F1RYN4_PIG", "81746", "729" ], [ "A0A8W4FN32-1", "A0A8W4FN32_PIG", "29601", "266" ], [ "F1RX26-1", "F1RX26_PIG", "50530", "460" ], [ "A0A287AVI7-1", "A0A287AVI7_PIG", "86025", "761" ], [ "A0A5G2R5J1-1", "A0A5G2R5J1_PIG", "52887", "490" ], [ "A0A5G2RGN2-1", "A0A5G2RGN2_PIG", "49402", "456" ], [ "F1RK67-1", "F1RK67_PIG", "83192", "766" ], [ "F1RIL0-1", "F1RIL0_PIG", "36189", "320" ], [ "A0A5G2RAP5-1", "A0A5G2RAP5_PIG", "27770", "250" ], [ "F1SQD5-1", "F1SQD5_PIG", "35544", "311" ], [ "A0A5G2R1D1-1", "A0A5G2R1D1_PIG", "35494", "314" ], [ "A0A4X1VH71-1", "A0A4X1VH71_PIG", "44771", "392" ], [ "A0A287BG37-1", "A0A287BG37_PIG", "112951", "1038" ] ] }, "readme": "Name\n - Pig Protein Information (UniProtKB)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2019-01-23T17:21:05.900608\n\nModified on\n - 2022-09-26T08:48:18.826045\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Pig Protein Information dataset contains pig [taxid:9823] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - UniProtKB entry id\n - UniProtKB mnemonic name\n - protein length\n - protein mass\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts it into a dataset as a csv format\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sus_scrofa.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-sus_scrofa.nt\n Output Subdomain\n Name: pig_protein_info_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_info_uniprotkb.csv\n Name: pig_protein_info_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_info_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"22786\"\n Name: \"uniprotkb_id\"\n Description: \"The entry name or mnemonic identifier assigned to the protein accession that consists of up to 11 uppercase alphanumeric characters for UniProtKB/Swiss-Prot entry and up to 16 uppercase alphanumeric characters for UniProtKB/TrEMBL entry with a defined naming convention\"\n Unique Values: \"22786\"\n Name: \"uniprotkb_protein_mass\"\n Description: \"Molecular Mass of the protein in Daltons (Da)\"\n Unique Values: \"20233\"\n Name: \"uniprotkb_protein_length\"\n Description: \"Length of the protein sequence\"\n Unique Values: \"2102\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_info_uniprotkb.csv" }