{ "bcoid": "GLY_000903", "title": "Pig UniProtKB Xref PRO", "description": "The Pig UniprotKB Xref PRO contains Sus scrofa [taxid:9823] UniProtKB canonical accessions cross-referenced ...", "filename": "pig_protein_xref_pro.csv", "filetype": "csv", "categories": { "species": [ "Sus scrofa" ], "molecule": [ "Protein" ], "tag": [ "PRO cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q9MYN5-1...", "protein_xref..." ], [ "A5A8V7-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q9MYN5-1", "protein_xref_pro", "PR_Q9MYN5", "" ], [ "A5A8V7-1", "protein_xref_pro", "PR_A5A8V7", "" ], [ "P09955-1", "protein_xref_pro", "PR_P09955", "" ], [ "P08419-1", "protein_xref_pro", "PR_P08419", "" ], [ "O02705-1", "protein_xref_pro", "PR_O02705", "" ], [ "P80276-1", "protein_xref_pro", "PR_P80276", "" ], [ "P35463-1", "protein_xref_pro", "PR_P35463", "" ], [ "P35750-1", "protein_xref_pro", "PR_P35750", "" ], [ "P10669-1", "protein_xref_pro", "PR_P10669", "" ], [ "P50578-1", "protein_xref_pro", "PR_P50578", "" ], [ "Q02110-1", "protein_xref_pro", "PR_Q02110", "" ], [ "P31636-1", "protein_xref_pro", "PR_P31636", "" ], [ "P19205-1", "protein_xref_pro", "PR_P19205", "" ], [ "P80147-1", "protein_xref_pro", "PR_P80147", "" ], [ "P30555-1", "protein_xref_pro", "PR_P30555", "" ], [ "P15145-1", "protein_xref_pro", "PR_P15145", "" ], [ "Q9GJT2-1", "protein_xref_pro", "PR_Q9GJT2", "" ], [ "P24964-1", "protein_xref_pro", "PR_P24964", "" ], [ "P22411-1", "protein_xref_pro", "PR_P22411", "" ], [ "P22412-1", "protein_xref_pro", "PR_P22412", "" ], [ "P00636-1", "protein_xref_pro", "PR_P00636", "" ], [ "P50130-1", "protein_xref_pro", "PR_P50130", "" ], [ "Q29010-1", "protein_xref_pro", "PR_Q29010", "" ], [ "Q28998-1", "protein_xref_pro", "PR_Q28998", "" ], [ "P06199-1", "protein_xref_pro", "PR_P06199", "" ], [ "P11708-1", "protein_xref_pro", "PR_P11708", "" ], [ "P00690-1", "protein_xref_pro", "PR_P00690", "" ], [ "P18434-1", "protein_xref_pro", "PR_P18434", "" ], [ "P32307-1", "protein_xref_pro", "PR_P32307", "" ], [ "Q29550-1", "protein_xref_pro", "PR_Q29550", "" ], [ "P19156-1", "protein_xref_pro", "PR_P19156", "" ], [ "P00336-1", "protein_xref_pro", "PR_P00336", "" ], [ "P09623-1", "protein_xref_pro", "PR_P09623", "" ], [ "Q6S4N2-1", "protein_xref_pro", "PR_Q6S4N2", "" ], [ "P04185-1", "protein_xref_pro", "PR_P04185", "" ], [ "P23687-1", "protein_xref_pro", "PR_P23687", "" ], [ "P00592-1", "protein_xref_pro", "PR_P00592", "" ], [ "O62855-1", "protein_xref_pro", "PR_O62855", "" ], [ "Q04967-1", "protein_xref_pro", "PR_Q04967", "" ], [ "P00371-1", "protein_xref_pro", "PR_P00371", "" ], [ "P50129-1", "protein_xref_pro", "PR_P50129", "" ], [ "P00772-1", "protein_xref_pro", "PR_P00772", "" ], [ "Q29092-1", "protein_xref_pro", "PR_Q29092", "" ], [ "Q28997-1", "protein_xref_pro", "PR_Q28997", "" ], [ "P34930-1", "protein_xref_pro", "PR_P34930", "" ], [ "P26044-1", "protein_xref_pro", "PR_P26044", "" ], [ "A3RGC1-1", "protein_xref_pro", "PR_A3RGC1", "" ] ] }, "readme": "Name\n - Pig UniProtKB Xref PRO\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - \n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Pig UniprotKB Xref PRO contains Sus scrofa [taxid:9823] UniProtKB canonical accessions cross-referenced to PRO database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. PRO provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them.\n\nDescription Domain\n Keywords\n - protein ontology\n - PRO\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PRO database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sus_scrofa.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-sus_scrofa.nt\n Output Subdomain\n Name: pig_protein_xref_pro.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_pro.csv\n Name: pig_protein_xref_pro.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_pro.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"47\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"47\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_xref_pro.csv" }