{ "bcoid": "GLY_000901", "title": "Pig UniProtKB Xref KEGG PATHWAY", "description": "The Pig UniProtKB Xref KEGG PATHWAY contains Sus scrofa [taxid:9823] UniProtKB canonical accessions cross-referenced ...", "filename": "pig_protein_xref_kegg.csv", "filetype": "csv", "categories": { "species": [ "Sus scrofa" ], "molecule": [ "Protein" ], "tag": [ "KEGG Pathway cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A0A4X1U326-1...", "protein_xref..." ], [ "I3LQS2-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "A0A4X1U326-1", "protein_xref_kegg", "ssc:100621853", "" ], [ "I3LQS2-1", "protein_xref_kegg", "ssc:100526240", "" ], [ "F1RTM0-1", "protein_xref_kegg", "ssc:100522569", "" ], [ "C0JPM4-1", "protein_xref_kegg", "ssc:396988", "" ], [ "O97676-1", "protein_xref_kegg", "ssc:397308", "" ], [ "P01232-1", "protein_xref_kegg", "ssc:397153", "" ], [ "P01238-1", "protein_xref_kegg", "ssc:396965", "" ], [ "I3LHP2-1", "protein_xref_kegg", "ssc:100621493", "" ], [ "F1SKE7-1", "protein_xref_kegg", "ssc:100156529", "" ], [ "Q8MJS1-1", "protein_xref_kegg", "ssc:397178", "" ], [ "A0A4X1VBA4-1", "protein_xref_kegg", "ssc:100737731", "" ], [ "A0A4X1UGW7-1", "protein_xref_kegg", "ssc:100152350", "" ], [ "A0A8D1DX92-1", "protein_xref_kegg", "ssc:100152814", "" ], [ "P81693-1", "protein_xref_kegg", "ssc:100737301", "" ], [ "C1JEX7-1", "protein_xref_kegg", "ssc:100286811", "" ], [ "A0A287BF79-1", "protein_xref_kegg", "ssc:100511492", "" ], [ "A0A5G2QU61-1", "protein_xref_kegg", "ssc:100736864", "" ], [ "A0A4X1SQM6-1", "protein_xref_kegg", "ssc:100624767", "" ], [ "F1RU42-1", "protein_xref_kegg", "ssc:100520884", "" ], [ "I3LU89-1", "protein_xref_kegg", "ssc:100628127", "" ], [ "A0A286ZL51-1", "protein_xref_kegg", "ssc:100514795", "" ], [ "F1SEX4-1", "protein_xref_kegg", "ssc:100520179", "" ], [ "F1SEX6-1", "protein_xref_kegg", "ssc:100519242", "" ], [ "A0A480Z1K0-1", "protein_xref_kegg", "ssc:100157997", "" ], [ "Q2HYU1-1", "protein_xref_kegg", "ssc:733602", "" ], [ "Q2HYU2-1", "protein_xref_kegg", "ssc:733601", "" ], [ "A0A4X1UGJ1-1", "protein_xref_kegg", "ssc:100512626", "" ], [ "A0A287ATT0-1", "protein_xref_kegg", "ssc:100511389", "" ], [ "A0A287BLC7-1", "protein_xref_kegg", "ssc:100522126", "" ], [ "A0A4X1W654-1", "protein_xref_kegg", "ssc:100518941", "" ], [ "I3LFE6-1", "protein_xref_kegg", "ssc:100511947", "" ], [ "F1RQT0-1", "protein_xref_kegg", "ssc:100519293", "" ], [ "A0A287AL92-1", "protein_xref_kegg", "ssc:100520583", "" ], [ "F1RUQ7-1", "protein_xref_kegg", "ssc:100510975", "" ], [ "A0A480SN06-1", "protein_xref_kegg", "ssc:100518256", "" ], [ "F1S890-1", "protein_xref_kegg", "ssc:100524534", "" ], [ "A0A287BQ26-1", "protein_xref_kegg", "ssc:100514092", "" ], [ "Q9MYN5-1", "protein_xref_kegg", "ssc:397589", "" ], [ "A0A4X1TFA2-1", "protein_xref_kegg", "ssc:100153859", "" ], [ "I3LMQ0-1", "protein_xref_kegg", "ssc:100511343", "" ], [ "A0A287AEA2-1", "protein_xref_kegg", "ssc:100511313", "" ], [ "A0A5G2QSN2-1", "protein_xref_kegg", "ssc:100737876", "" ], [ "A0A287ASJ8-1", "protein_xref_kegg", "ssc:100511780", "" ], [ "A0A5G2QXI3-1", "protein_xref_kegg", "ssc:100517293", "" ], [ "F1SLF2-1", "protein_xref_kegg", "ssc:100621633", "" ], [ "F1SAJ5-1", "protein_xref_kegg", "ssc:100515499", "" ], [ "A0A286ZKL8-1", "protein_xref_kegg", "ssc:100511169", "" ], [ "A0A286ZKL4-1", "protein_xref_kegg", "ssc:100738445", "" ], [ "A0A286ZKL2-1", "protein_xref_kegg", "ssc:100154966", "" ], [ "P00889-1", "protein_xref_kegg", "ssc:397519", "" ], [ "O46409-1", "protein_xref_kegg", "ssc:397681", "" ], [ "A0A8W4FJN8-1", "protein_xref_kegg", "ssc:100519361", "" ], [ "A0A4X1V4U5-1", "protein_xref_kegg", "ssc:100513846", "" ], [ "F1RZL4-1", "protein_xref_kegg", "ssc:397344", "" ], [ "Q6RHW2-1", "protein_xref_kegg", "ssc:404696", "" ], [ "Q6RHW4-1", "protein_xref_kegg", "ssc:404698", "" ], [ "A0A8D0TEH7-1", "protein_xref_kegg", "ssc:100525436", "" ], [ "A0A4X1W8S9-1", "protein_xref_kegg", "ssc:100512108", "" ], [ "K7GS70-1", "protein_xref_kegg", "ssc:100519073", "" ], [ "A0A4X1SPN2-1", "protein_xref_kegg", "ssc:102166962", "" ], [ "A0A287A4L5-1", "protein_xref_kegg", "ssc:100523687", "" ], [ "A0A286ZM51-1", "protein_xref_kegg", "ssc:100156107", "" ], [ "A0A8D0M0Q8-1", "protein_xref_kegg", "ssc:100525175", "" ], [ "A0A8D2BGL9-1", "protein_xref_kegg", "ssc:100520050", "" ], [ "A0A5G2QUE5-1", "protein_xref_kegg", "ssc:100524011", "" ], [ "A0A8D1R1E7-1", "protein_xref_kegg", "ssc:100157138", "" ], [ "A0A287BHT9-1", "protein_xref_kegg", "ssc:100523046", "" ], [ "Q9BDJ5-1", "protein_xref_kegg", "ssc:397246", "" ], [ "F1RVZ0-1", "protein_xref_kegg", "ssc:100520974", "" ], [ "F1RVZ5-1", "protein_xref_kegg", "ssc:100513642", "" ], [ "F1RVZ4-1", "protein_xref_kegg", "ssc:100513840", "" ], [ "P80895-1", "protein_xref_kegg", "ssc:100502562", "" ], [ "A0A4X1U3N8-1", "protein_xref_kegg", "ssc:100514529", "" ], [ "A0A480DPE1-1", "protein_xref_kegg", "ssc:100513766", "" ], [ "F1RPP2-1", "protein_xref_kegg", "ssc:100157355", "" ], [ "I3LLM8-1", "protein_xref_kegg", "ssc:100626046", "" ], [ "A0A4X1U981-1", "protein_xref_kegg", "ssc:102162332", "" ], [ "F1RIS0-1", "protein_xref_kegg", "ssc:100511374", "" ], [ "A0A287AQ52-1", "protein_xref_kegg", "ssc:100621644", "" ], [ "A0A287A053-1", "protein_xref_kegg", "ssc:100153039", "" ], [ "A1XQT4-1", "protein_xref_kegg", "ssc:100038031", "" ], [ "A0A4X1WCN6-1", "protein_xref_kegg", "ssc:100522657", "" ], [ "A0A4X1WCN9-1", "protein_xref_kegg", "ssc:100525816", "" ], [ "A0A4X1SNF2-1", "protein_xref_kegg", "ssc:100627068", "" ] ] }, "readme": "Name\n - Pig UniProtKB Xref KEGG PATHWAY\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - 2024-02-27T15:12:38\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Pig UniProtKB Xref KEGG PATHWAY contains Sus scrofa [taxid:9823] UniProtKB canonical accessions cross-referenced to KEGG PATHWAY database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen, KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction, reaction and relation networks.\n\nDescription Domain\n Keywords\n - pathways\n - reactions\n - KEGG Pathway\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to KEGG PATHWAY database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sus_scrofa.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-sus_scrofa.nt\n Output Subdomain\n Name: pig_protein_xref_kegg.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_kegg.csv\n Name: pig_protein_xref_kegg.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_xref_kegg.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"6325\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"6344\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_xref_kegg.csv" }