{ "bcoid": "GLY_000891", "title": "Pig Reaction Participants (Reactome)", "description": "The Pig Protein Reaction Participants (Reactome) dataset contains reactions participants information ...", "filename": "pig_protein_participants_reactome.csv", "filetype": "csv", "categories": { "species": [ "Pig" ], "molecule": [ "Protein" ], "tag": [ "Reaction Participants (Reactome)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "R-SSC-893644...", "R-ALL-893644..." ], [ "R-SSC-893644...", "R-ALL-893644..." ] ], "headers": [ "reaction_id...", "participant_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "reaction_id" }, { "type": "string", "label": "participant_id" }, { "type": "string", "label": "participant_name" }, { "type": "string", "label": "role" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_type" } ], [ "R-SSC-8936442", 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"R-SSC-6799097", "R-SSC-1247509", "ZNF420 [nucleoplasm]", "input", "ENSSSCG00000025590", "Ensembl" ], [ "R-SSC-6799097", "R-SSC-1247509", "ZNF420 [nucleoplasm]", "input", "ENSSSCP00000003175", "Ensembl" ], [ "R-SSC-6799097", "R-SSC-1247509", "ZNF420 [nucleoplasm]", "input", "F1RKN1", "UniProt" ], [ "R-SSC-6799097", "R-SSC-1247509", "ZNF420 [nucleoplasm]", "input", "ENSSSCT00000003256", "Ensembl" ], [ "R-SSC-6799097", "R-SSC-6799095", "phospho-p-S68-ZNF420 [nucleoplasm]", "output", "F1RKN1", "UniProt" ], [ "R-SSC-6799097", "R-SSC-6799095", "phospho-p-S68-ZNF420 [nucleoplasm]", "output", "ENSSSCP00000003175", "Ensembl" ] ] }, "readme": "Name\n - Pig Reaction Participants (Reactome)\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - 2024-02-26T18:22:43\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Pig Protein Reaction Participants (Reactome) dataset contains reactions participants information for pathways for pig [taxid:9823] UniProtKB accessions that includes reaction IDs, participant ID, participant name, role, xref ID etc from Reactome database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB, Reactome and GlyGen.\n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: database_accession.tsv\n URI: https:/data.glygen.org/ln2downloads/chebi/2024_01_31/database_accession.tsv\n Name: uniprot-proteome-sus_scrofa.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-sus_scrofa.nt\n Output Subdomain\n Name: pig_protein_participants_reactome.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_participants_reactome.csv\n Name: pig_protein_participants_reactome.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/pig_protein_participants_reactome.stat.csv\n\nFields\n Name: \"reaction_id\"\n Description: \"The identifier assigned to a reaction in Reactome database\"\n Unique Values: \"5358\"\n Name: \"participant_id\"\n Description: \"\"\n Unique Values: \"5139\"\n Name: \"participant_name\"\n Description: \"\"\n Unique Values: \"3039\"\n Name: \"role\"\n Description: \"\"\n Unique Values: \"3\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"9409\"\n Name: \"xref_type\"\n Description: \"\"\n Unique Values: \"36\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/pig_protein_participants_reactome.csv" }