{ "bcoid": "GLY_000890", "title": "Glycan Xref Glycan Array Data Repository", "description": "The dataset provides cross-references to the GlyGen Glycan Array Data Repository (https://glygen.ccrc.uga.edu/ggarray/) ...", "filename": "glycan_xref_gadr.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tag": [ "GADR cross-references" ], "status": [ "Reviewed" ], "file_type": [ "csv" ], "scope": [ "internal" ], "species": [ "Homo sapiens", "Mus musculus", "Rattus", "Sus scrofa", "Saccharomyces cerevisiae", "Drosophila melanogaster", "Rattus norvegicus", "Severe acute respiratory syndrome coronavirus 2", "Sus scrofa domesticus", "Dictyostelium discoideum", "Hepacivirus C" ] }, "minitable": { "content": [ [ "G43981RC...", "3862081GAR..." ], [ "G14633CL...", "3544610GAR..." ] ], "headers": [ "glytoucan_ac...", "xref_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_key" } ], [ "G43981RC", "3862081GAR", "glycan_xref_gadr" ], [ "G14633CL", "3544610GAR", "glycan_xref_gadr" ], [ "G03277YI", "5200038GAR", "glycan_xref_gadr" ], [ "G78800HY", "2113509GAR", "glycan_xref_gadr" ], [ "G69211UR", "6543735GAR", "glycan_xref_gadr" ], [ "G72344YZ", "5066537GAR", "glycan_xref_gadr" ], [ "G87171PZ", "4060571GAR", "glycan_xref_gadr" ], [ "G89008DB", "7203829GAR", "glycan_xref_gadr" ], [ "G58169ID", "6098495GAR", "glycan_xref_gadr" ], [ "G31736BK", "5964820GAR", "glycan_xref_gadr" ], [ "G32776KY", "5547528GAR", "glycan_xref_gadr" ], [ "G00057MO", "9425911GAR", "glycan_xref_gadr" ], [ "G85661BQ", "9038574GAR", "glycan_xref_gadr" ], [ "G26238GL", "2362547GAR", "glycan_xref_gadr" ], [ "G01854VF", "7567874GAR", "glycan_xref_gadr" ], [ "G03629LR", "3258467GAR", "glycan_xref_gadr" ], [ "G92279HJ", "10775531GAR", "glycan_xref_gadr" ], [ "G56516VH", "3884596GAR", "glycan_xref_gadr" ], [ "G92323ZH", "8464552GAR", "glycan_xref_gadr" ], [ "G91237TK", "3759464GAR", "glycan_xref_gadr" ], [ "G55205ZV", "8786037GAR", "glycan_xref_gadr" ], [ "G16636QX", "4192594GAR", "glycan_xref_gadr" ], [ "G00076PK", "1794851GAR", "glycan_xref_gadr" ], [ "G51773AH", "7184230GAR", "glycan_xref_gadr" ], [ "G65414VM", "1425714GAR", "glycan_xref_gadr" ], [ "G89307GT", "3816001GAR", "glycan_xref_gadr" ], [ "G46613JI", "3172366GAR", "glycan_xref_gadr" ], [ "G48558GR", "1821644GAR", "glycan_xref_gadr" ], [ "G11423ZI", "9621807GAR", "glycan_xref_gadr" ], [ "G25129BT", "10669539GAR", "glycan_xref_gadr" ], [ "G34573QO", "6247099GAR", "glycan_xref_gadr" ], [ "G51379UR", "9472310GAR", "glycan_xref_gadr" ], [ "G71124KE", "10657754GAR", "glycan_xref_gadr" ], [ "G77384RA", "6656971GAR", "glycan_xref_gadr" ], [ "G09938IH", "6092330GAR", "glycan_xref_gadr" ], [ "G64973KT", "8372028GAR", "glycan_xref_gadr" ], [ "G01759NM", "6926131GAR", "glycan_xref_gadr" ], [ "G18132YR", "6819459GAR", "glycan_xref_gadr" ], [ "G04187IN", "3230935GAR", "glycan_xref_gadr" ], [ "G68350IL", "4246646GAR", "glycan_xref_gadr" ], [ "G14900XK", "8448754GAR", "glycan_xref_gadr" ], [ "G24464VD", "10316975GAR", "glycan_xref_gadr" ], [ "G90333CG", "7388198GAR", "glycan_xref_gadr" ], [ "G96721TP", "5703325GAR", "glycan_xref_gadr" ], [ "G80176YK", "2974394GAR", "glycan_xref_gadr" ], [ "G55144QZ", "8895948GAR", "glycan_xref_gadr" ], [ "G15648GT", "9894639GAR", "glycan_xref_gadr" ], [ "G82862JX", "9170313GAR", "glycan_xref_gadr" ], [ "G03044ED", "2268138GAR", "glycan_xref_gadr" ], [ "G50762GU", "6542231GAR", "glycan_xref_gadr" ], [ "G78818SP", "1150511GAR", "glycan_xref_gadr" ], [ "G35910XN", "8729084GAR", "glycan_xref_gadr" ], [ "G48440GN", "2070944GAR", "glycan_xref_gadr" ], [ "G10388YZ", "3494555GAR", "glycan_xref_gadr" ], [ "G18878GS", "7534582GAR", "glycan_xref_gadr" ], [ "G06000DZ", "3644821GAR", "glycan_xref_gadr" ], [ "G79094AA", "7323104GAR", "glycan_xref_gadr" ], [ "G00059MO", "9396080GAR", "glycan_xref_gadr" ], [ "G00407UJ", "6230879GAR", "glycan_xref_gadr" ], [ "G21856LC", "1477351GAR", "glycan_xref_gadr" ], [ "G11042HO", "6075815GAR", "glycan_xref_gadr" ], [ "G96919WB", "1600049GAR", "glycan_xref_gadr" ], [ "G51964GO", "9935040GAR", "glycan_xref_gadr" ], [ "G23046QV", "8784015GAR", "glycan_xref_gadr" ], [ "G41470US", "2659998GAR", "glycan_xref_gadr" ], [ "G51331BY", "2090677GAR", "glycan_xref_gadr" ], [ "G09126MW", "10520924GAR", "glycan_xref_gadr" ], [ "G79333MY", "2648315GAR", "glycan_xref_gadr" ], [ "G00055MO", "7216566GAR", "glycan_xref_gadr" ], [ "G71121NN", "10333580GAR", "glycan_xref_gadr" ], [ "G03266UM", "4261038GAR", "glycan_xref_gadr" ], [ "G25322NY", "1539358GAR", "glycan_xref_gadr" ], [ "G97345NY", "6720077GAR", "glycan_xref_gadr" ], [ "G24381FI", "10260160GAR", "glycan_xref_gadr" ], [ "G38121JC", "10331667GAR", "glycan_xref_gadr" ], [ "G03770HX", "3461351GAR", "glycan_xref_gadr" ], [ "G22418PV", "2937911GAR", "glycan_xref_gadr" ], [ "G07819HC", "3331246GAR", "glycan_xref_gadr" ], [ "G36231CI", "1600893GAR", "glycan_xref_gadr" ], [ "G72954XC", "5640889GAR", "glycan_xref_gadr" ], [ "G22754FQ", "6704227GAR", "glycan_xref_gadr" ], [ "G56749GV", "9913380GAR", "glycan_xref_gadr" ], [ "G23322RK", "6144471GAR", "glycan_xref_gadr" ], [ "G80722US", "2336827GAR", "glycan_xref_gadr" ] ] }, "readme": "Name\n - Glycan Xref Glycan Array Data Repository\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - \n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Rene Ranzinger [rene@ccrc.uga.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides cross-references to the GlyGen Glycan Array Data Repository (https://glygen.ccrc.uga.edu/ggarray/) for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLY_000281).\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - GADR\n - Glycan Array Data Repository\n - Cross-references\n - ID/Accession Mapping\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_masterlist.csv\n Output Subdomain\n Name: glycan_xref_gadr.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_xref_gadr.csv\n Name: glycan_xref_gadr.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_xref_gadr.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1076\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1076\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/glycan_xref_gadr.csv" }