{ "bcoid": "GLY_000876", "title": "Dicty UniProtKB Xref PRO", "description": "The Dicty UniprotKB Xref PRO contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced ...", "filename": "dicty_protein_xref_pro.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Protein" ], "tag": [ "PRO cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q54PT1-1...", "protein_xref..." ], [ "Q54PT2-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q54PT1-1", "protein_xref_pro", "PR_Q54PT1", "" ], [ "Q54PT2-1", "protein_xref_pro", "PR_Q54PT2", "" ], [ "Q54PT3-1", "protein_xref_pro", "PR_Q54PT3", "" ], [ "Q54PT6-1", "protein_xref_pro", "PR_Q54PT6", "" ], [ "Q54PT9-1", "protein_xref_pro", "PR_Q54PT9", "" ], [ "Q54N47-1", "protein_xref_pro", "PR_Q54N47", "" ], [ "Q54N44-1", "protein_xref_pro", "PR_Q54N44", "" ], [ "Q54N45-1", "protein_xref_pro", "PR_Q54N45", "" ], [ "Q54N40-1", "protein_xref_pro", "PR_Q54N40", "" ], [ "Q54N41-1", "protein_xref_pro", "PR_Q54N41", "" ], [ "Q54N48-1", "protein_xref_pro", "PR_Q54N48", "" ], [ "Q54N49-1", "protein_xref_pro", "PR_Q54N49", "" ], [ "Q54QV8-1", "protein_xref_pro", "PR_Q54QV8", "" ], [ "Q54QV0-1", "protein_xref_pro", "PR_Q54QV0", "" ], [ "Q86AV4-1", "protein_xref_pro", "PR_Q86AV4", "" ], [ "Q86AV5-1", "protein_xref_pro", "PR_Q86AV5", "" ], [ "Q86AV6-1", "protein_xref_pro", "PR_Q86AV6", "" ], [ "Q86HC2-1", "protein_xref_pro", "PR_Q86HC2", "" ], [ "Q7Z1I0-1", "protein_xref_pro", "PR_Q7Z1I0", "" ], [ "Q55BJ9-1", "protein_xref_pro", "PR_Q55BJ9", "" ], [ "Q55BJ2-1", "protein_xref_pro", "PR_Q55BJ2", "" ], [ "Q55BJ6-1", "protein_xref_pro", "PR_Q55BJ6", "" ], [ "Q54GS1-1", "protein_xref_pro", "PR_Q54GS1", "" ], [ "Q54JJ3-1", "protein_xref_pro", "PR_Q54JJ3", "" ], [ "Q54JJ6-1", "protein_xref_pro", "PR_Q54JJ6", "" ], [ "Q54JJ7-1", "protein_xref_pro", "PR_Q54JJ7", "" ], [ "Q54GS8-1", "protein_xref_pro", "PR_Q54GS8", "" ], [ "Q86K94-1", "protein_xref_pro", "PR_Q86K94", "" ], [ "Q86K93-1", "protein_xref_pro", "PR_Q86K93", "" ], [ "Q86K91-1", "protein_xref_pro", "PR_Q86K91", "" ], [ "Q86K90-1", "protein_xref_pro", "PR_Q86K90", "" ], [ "Q9U3X4-1", "protein_xref_pro", "PR_Q9U3X4", "" ], [ "Q54KL0-1", "protein_xref_pro", "PR_Q54KL0", "" ], [ "Q54KL5-1", "protein_xref_pro", "PR_Q54KL5", "" ], [ "Q54WP3-1", "protein_xref_pro", "PR_Q54WP3", "" ], [ "Q54KL9-1", "protein_xref_pro", "PR_Q54KL9", "" ], [ "Q54KL8-1", "protein_xref_pro", "PR_Q54KL8", "" ], [ "Q54WP5-1", "protein_xref_pro", "PR_Q54WP5", "" ], [ "Q54T60-1", "protein_xref_pro", "PR_Q54T60", "" ], [ "Q55E98-1", "protein_xref_pro", "PR_Q55E98", "" ], [ "Q55E94-1", "protein_xref_pro", "PR_Q55E94", "" ], [ "Q55E93-1", "protein_xref_pro", "PR_Q55E93", "" ], [ "Q54H84-1", "protein_xref_pro", "PR_Q54H84", "" ], [ "Q54H86-1", "protein_xref_pro", "PR_Q54H86", "" ], [ "Q54H80-1", "protein_xref_pro", "PR_Q54H80", "" ], [ "P22887-1", "protein_xref_pro", "PR_P22887", "" ], [ "Q86CZ2-1", "protein_xref_pro", "PR_Q86CZ2", "" ], [ "Q869X2-1", "protein_xref_pro", "PR_Q869X2", "" ], [ "Q869X3-1", "protein_xref_pro", "PR_Q869X3", "" ], [ "Q869X7-1", "protein_xref_pro", "PR_Q869X7", "" ], [ "Q54U75-1", "protein_xref_pro", "PR_Q54U75", "" ], [ "Q55DK5-1", "protein_xref_pro", "PR_Q55DK5", "" ], [ "Q55DK2-1", "protein_xref_pro", "PR_Q55DK2", "" ], [ "Q54WK1-1", "protein_xref_pro", "PR_Q54WK1", "" ], [ "Q55GK1-1", "protein_xref_pro", "PR_Q55GK1", "" ], [ "Q55GK0-1", "protein_xref_pro", "PR_Q55GK0", "" ], [ "Q55GK3-1", "protein_xref_pro", "PR_Q55GK3", "" ], [ "Q55GK8-1", "protein_xref_pro", "PR_Q55GK8", "" ], [ "Q8T2A7-1", "protein_xref_pro", "PR_Q8T2A7", "" ], [ "Q8T2A1-1", "protein_xref_pro", "PR_Q8T2A1", "" ], [ "Q54DZ6-1", "protein_xref_pro", "PR_Q54DZ6", "" ], [ "Q54EX5-1", "protein_xref_pro", "PR_Q54EX5", "" ], [ "Q54EX7-1", "protein_xref_pro", "PR_Q54EX7", "" ], [ "Q54RM1-1", "protein_xref_pro", "PR_Q54RM1", "" ], [ "Q54RM0-1", "protein_xref_pro", "PR_Q54RM0", "" ], [ "Q54RM2-1", "protein_xref_pro", "PR_Q54RM2", "" ], [ "Q54RM7-1", "protein_xref_pro", "PR_Q54RM7", "" ], [ "Q86L05-1", "protein_xref_pro", "PR_Q86L05", "" ], [ "Q86L04-1", "protein_xref_pro", "PR_Q86L04", "" ], [ "Q54V61-1", "protein_xref_pro", "PR_Q54V61", "" ], [ "Q75JX0-1", "protein_xref_pro", "PR_Q75JX0", "" ], [ "Q54G18-1", "protein_xref_pro", "PR_Q54G18", "" ], [ "Q54G19-1", "protein_xref_pro", "PR_Q54G19", "" ], [ "Q54G14-1", "protein_xref_pro", "PR_Q54G14", "" ], [ "Q54G11-1", "protein_xref_pro", "PR_Q54G11", "" ], [ "Q553U6-1", "protein_xref_pro", "PR_Q553U6", "" ], [ "Q553U5-1", "protein_xref_pro", "PR_Q553U5", "" ], [ "Q55GT2-1", "protein_xref_pro", "PR_Q55GT2", "" ], [ "Q55GT5-1", "protein_xref_pro", "PR_Q55GT5", "" ], [ "Q552Y8-1", "protein_xref_pro", "PR_Q552Y8", "" ], [ "Q55CM7-1", "protein_xref_pro", "PR_Q55CM7", "" ], [ "Q55CM6-1", "protein_xref_pro", "PR_Q55CM6", "" ], [ "Q554S6-1", "protein_xref_pro", "PR_Q554S6", "" ], [ "Q554S4-1", "protein_xref_pro", "PR_Q554S4", "" ] ] }, "readme": "Name\n - Dicty UniProtKB Xref PRO\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - 2024-01-09T05:46:21\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Dicty UniprotKB Xref PRO contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced to PRO database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \",\n PRO provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them.\n\nDescription Domain\n Keywords\n - protein ontology\n - PRO\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PRO database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-dictyostelium-discoideum.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-dictyostelium-discoideum.nt\n Output Subdomain\n Name: dicty_protein_xref_pro.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_xref_pro.csv\n Name: dicty_protein_xref_pro.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_xref_pro.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"4455\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"4455\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/dicty_protein_xref_pro.csv" }