{ "bcoid": "GLY_000867", "title": "Dicty UniProtKB Xref NCBI Gene", "description": "The Dicty UniProtKB Xref NCBI Gene dataset contains dicty [taxid:44689] UniProtKB canonical accessions ...", "filename": "dicty_protein_xref_geneid.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Protein" ], "tag": [ "NCBI Gene cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q54PT0-1...", "protein_xref..." ], [ "Q54PT1-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q54PT0-1", "protein_xref_geneid", "8624546", "" ], [ "Q54PT1-1", "protein_xref_geneid", "8624545", "" ], [ "Q54PT2-1", "protein_xref_geneid", "8624544", "" ], [ "Q54PT3-1", "protein_xref_geneid", "8624543", "" ], [ "Q54PT4-1", "protein_xref_geneid", "8624542", "" ], [ "Q54PT5-1", "protein_xref_geneid", "8624541", "" ], [ "Q54PT6-1", "protein_xref_geneid", "8624540", "" ], [ "Q54PT7-1", "protein_xref_geneid", "8624539", "" ], [ "Q54PT8-1", "protein_xref_geneid", "8624538", "" ], [ "Q54PT9-1", "protein_xref_geneid", "8624537", "" ], [ "Q54N46-1", "protein_xref_geneid", "8625145", "" ], [ "Q54N47-1", "protein_xref_geneid", "8625144", "" ], [ "Q54N44-1", "protein_xref_geneid", "8625147", "" ], [ "Q54N45-1", "protein_xref_geneid", "8625146", "" ], [ "Q54N42-1", "protein_xref_geneid", "8625149", "" ], [ "Q54N43-1", "protein_xref_geneid", "8625148", "" ], [ "Q54N40-1", "protein_xref_geneid", "8625151", "" ], [ "Q54N41-1", "protein_xref_geneid", "8625150", "" ], [ "Q54N48-1", "protein_xref_geneid", "8625143", "" ], [ "Q54N49-1", "protein_xref_geneid", "8625142", "" ], [ "Q54EB1-1", "protein_xref_geneid", "8628274", "" ], [ "Q54QV8-1", "protein_xref_geneid", "8624154", "" ], [ "Q54EB6-1", "protein_xref_geneid", "8628269", "" ], [ "Q54QV1-1", "protein_xref_geneid", "8624161", "" ], [ "O96070-1", "protein_xref_geneid", "8627586", "" ], [ "Q54QV0-1", "protein_xref_geneid", "8624162", "" ], [ "Q54QV4-1", "protein_xref_geneid", "8624158", "" ], [ "Q86AV4-1", "protein_xref_geneid", "8620690", "" ], [ "Q86AV5-1", "protein_xref_geneid", "8620688", "" ], [ "Q86AV6-1", "protein_xref_geneid", "8620687", "" ], [ "Q86HC9-1", "protein_xref_geneid", "8620057", "" ], [ "Q86HC2-1", "protein_xref_geneid", "8620070", "" ], [ "Q86HC3-1", "protein_xref_geneid", "8620069", "" ], [ "Q86HC7-1", "protein_xref_geneid", "8620060", "" ], [ "Q86HC4-1", "protein_xref_geneid", "8620067", "" ], [ "Q86HC5-1", "protein_xref_geneid", "8620063", "" ], [ "Q7Z1I0-1", "protein_xref_geneid", "8627349", "" ], [ "Q55BJ9-1", "protein_xref_geneid", "8617806", "" ], [ "Q55BJ8-1", "protein_xref_geneid", "8617807", "" ], [ "Q55BJ3-1", "protein_xref_geneid", "8617812", "" ], [ "Q55BJ2-1", "protein_xref_geneid", "8617813", "" ], [ "Q55BJ1-1", "protein_xref_geneid", "8617814", "" ], [ "Q55BJ0-1", "protein_xref_geneid", "8617815", "" ], [ "Q55BJ7-1", "protein_xref_geneid", "8617808", "" ], [ "Q55BJ6-1", "protein_xref_geneid", "8617809", "" ], [ "Q55BJ5-1", "protein_xref_geneid", "8617810", "" ], [ "Q55BJ4-1", "protein_xref_geneid", "8617811", "" ], [ "Q54GS1-1", "protein_xref_geneid", "8627413", "" ], [ "Q54JJ0-1", "protein_xref_geneid", "8626416", "" ], [ "Q54JJ1-1", "protein_xref_geneid", "8626415", "" ], [ "Q54JJ3-1", "protein_xref_geneid", "8626413", "" ], [ "Q54JJ4-1", "protein_xref_geneid", "8626412", "" ], [ "Q54JJ5-1", "protein_xref_geneid", "8626411", "" ], [ "Q54JJ6-1", "protein_xref_geneid", "8626410", "" ], [ "Q54JJ7-1", "protein_xref_geneid", "8626409", "" ], [ "Q54JJ8-1", "protein_xref_geneid", "8626408", "" ], [ "Q54JJ9-1", "protein_xref_geneid", "8626407", "" ], [ "Q54GS8-1", "protein_xref_geneid", "8627406", "" ], [ "Q54GS9-1", "protein_xref_geneid", "8627405", "" ], [ "Q86K98-1", "protein_xref_geneid", "8621113", "" ], [ "Q86K96-1", "protein_xref_geneid", "8620869", "" ], [ "Q86K95-1", "protein_xref_geneid", "8620868", "" ], [ "Q86K94-1", "protein_xref_geneid", "8620867", "" ], [ "Q86K93-1", "protein_xref_geneid", "8620866", "" ], [ "Q86K92-1", "protein_xref_geneid", "8620871", "" ], [ "Q86K91-1", "protein_xref_geneid", "8620874", "" ], [ "Q86K90-1", "protein_xref_geneid", "8620875", "" ], [ "Q9U3X4-1", "protein_xref_geneid", "8622627", "" ], [ "Q54KL3-1", "protein_xref_geneid", "8626041", "" ], [ "Q54KL2-1", "protein_xref_geneid", "8626042", "" ], [ "Q54WP9-1", "protein_xref_geneid", "8622076", "" ], [ "Q54KL0-1", "protein_xref_geneid", "8626044", "" ], [ "Q54KL7-1", "protein_xref_geneid", "8626038", "" ], [ "Q558Y9-1", "protein_xref_geneid", "8618606", "" ], [ "Q54KL5-1", "protein_xref_geneid", "8626039", "" ], [ "Q54KL4-1", "protein_xref_geneid", "8626040", "" ], [ "Q54WP3-1", "protein_xref_geneid", "8622082", "" ], [ "Q558Y5-1", "protein_xref_geneid", "8618610", "" ], [ "Q54KL9-1", "protein_xref_geneid", "8626036", "" ], [ "Q54KL8-1", "protein_xref_geneid", "8626037", "" ], [ "Q54WP7-1", "protein_xref_geneid", "8622078", "" ], [ "Q54WP6-1", "protein_xref_geneid", "8622079", "" ], [ "Q54WP5-1", "protein_xref_geneid", "8622080", "" ], [ "Q54WP4-1", "protein_xref_geneid", "8622081", "" ] ] }, "readme": "Name\n - Dicty UniProtKB Xref NCBI Gene\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - 2024-01-09T05:28:20\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Dicty UniProtKB Xref NCBI Gene dataset contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced to NCBI Gene database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\",\n NCBI Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.\n\nDescription Domain\n Keywords\n - gene id\n - NCBI gene\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to NCBI Gene database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-dictyostelium-discoideum.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-dictyostelium-discoideum.nt\n Output Subdomain\n Name: dicty_protein_xref_geneid.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_xref_geneid.csv\n Name: dicty_protein_xref_geneid.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_xref_geneid.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"12706\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"13086\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/dicty_protein_xref_geneid.csv" }