{ "bcoid": "GLY_000863", "title": "Dicty UniProtKB Xref CAZy", "description": "The Dicty UniprotKB Xref CAZy contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced ...", "filename": "dicty_protein_xref_cazy.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Protein" ], "tag": [ "Cazy" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q86AV4-1...", "protein_xref..." ], [ "Q7Z1I0-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q86AV4-1", "protein_xref_cazy", "CBM63", "Carbohydrate-Binding Module Family 63" ], [ "Q7Z1I0-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q94502-1", "protein_xref_cazy", "GH31", "Glycoside Hydrolase Family 31" ], [ "P90522-1", "protein_xref_cazy", "GT33", "Glycosyltransferase Family 33" ], [ "Q8MML4-1", "protein_xref_cazy", "GH22", "Glycoside Hydrolase Family 22" ], [ "Q54BF5-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q7Z202-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q7Z203-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q23892-1", "protein_xref_cazy", "GH3", "Glycoside Hydrolase Family 3" ], [ "Q86KS0-1", "protein_xref_cazy", "CBM8", "Carbohydrate-Binding Module Family 8" ], [ "Q86JN1-1", "protein_xref_cazy", "CBM20", "Carbohydrate-Binding Module Family 20" ], [ "Q86I64-1", "protein_xref_cazy", "GT60", "Glycosyltransferase Family 60" ], [ "Q556F2-1", "protein_xref_cazy", "GH24", "Glycoside Hydrolase Family 24" ], [ "Q86AA1-1", "protein_xref_cazy", "GH24", "Glycoside Hydrolase Family 24" ], [ "P13723-1", "protein_xref_cazy", "GH20", "Glycoside Hydrolase Family 20" ], [ "P22699-1", "protein_xref_cazy", "CBM8", "Carbohydrate-Binding Module Family 8" ], [ "P22699-1", "protein_xref_cazy", "GH9", "Glycoside Hydrolase Family 9" ], [ "P22698-1", "protein_xref_cazy", "CBM49", "Carbohydrate-Binding Module Family 49" ], [ "Q54QG0-1", "protein_xref_cazy", "GT2", "Glycosyltransferase Family 2" ], [ "Q54QG0-1", "protein_xref_cazy", "GT74", "Glycosyltransferase Family 74" ], [ "Q8T191-1", "protein_xref_cazy", "GT24", "Glycosyltransferase Family 24" ], [ "Q86HG3-1", "protein_xref_cazy", "GH15", "Glycoside Hydrolase Family 15" ], [ "Q00766-1", "protein_xref_cazy", "GT35", "Glycosyltransferase Family 35" ], [ "Q55FW5-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "P34114-1", "protein_xref_cazy", "GT35", "Glycosyltransferase Family 35" ], [ "Q86K62-1", "protein_xref_cazy", "AA10", "Auxiliary Activities 10" ], [ "P34098-1", "protein_xref_cazy", "GH38", "Glycoside Hydrolase Family 38" ], [ "Q54IL5-1", "protein_xref_cazy", "GT1", "Glycosyltransferase Family 1" ], [ "Q554E2-1", "protein_xref_cazy", "GT57", "Glycosyltransferase Family 57" ], [ "P10901-1", "protein_xref_cazy", "GH29", "Glycoside Hydrolase Family 29" ], [ "Q8T1C6-1", "protein_xref_cazy", "GT60", "Glycosyltransferase Family 60" ], [ "Q555Q9-1", "protein_xref_cazy", "CBM48", "Carbohydrate-Binding Module Family 48" ], [ "Q555Q9-1", "protein_xref_cazy", "GH13", "Glycoside Hydrolase Family 13" ], [ "Q7Z1Z9-1", "protein_xref_cazy", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q8T293-1", "protein_xref_cazy", "GH18", "Glycoside Hydrolase Family 18" ], [ "Q86J24-1", "protein_xref_cazy", "GT10", "Glycosyltransferase Family 10" ], [ "Q54RP0-1", "protein_xref_cazy", "GT77", "Glycosyltransferase Family 77" ], [ "Q9U720-1", "protein_xref_cazy", "GT2", "Glycosyltransferase Family 2" ], [ "Q54J42-1", "protein_xref_cazy", "GT2", "Glycosyltransferase Family 2" ], [ "Q8MYJ1-1", "protein_xref_cazy", "CBM63", "Carbohydrate-Binding Module Family 63" ], [ "Q86JD3-1", "protein_xref_cazy", "GH18", "Glycoside Hydrolase Family 18" ] ] }, "readme": "Name\n - Dicty UniProtKB Xref CAZy\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - 2024-01-09T05:21:57\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Dicty UniprotKB Xref CAZy contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced to CAZy database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\",\n \"CAZy is a database of Carbohydrate-Active enZYmes (CAZymes). The database contains a classification and associated information about enzymes involved in the synthesis, metabolism, and recognition of complex carbohydrates\n\nDescription Domain\n Keywords\n - carbohydrate family\n - CAZy\n - glycosyltransferase\n - glycohydrolase\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to CAZy database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-dictyostelium-discoideum.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-dictyostelium-discoideum.nt\n Output Subdomain\n Name: dicty_protein_xref_cazy.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_xref_cazy.csv\n Name: dicty_protein_xref_cazy.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_xref_cazy.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"38\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"28\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"28\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/dicty_protein_xref_cazy.csv" }