{ "bcoid": "GLY_000847", "title": "Dicty Proteome Masterlist (UniProtKB)", "description": "The Dicty Proteome Materlist dataset contains dicty [taxid:44689] UniProtKB canonical accessions mapped ...", "filename": "dicty_protein_masterlist.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Protein" ], "tag": [ "Protein Canonical Accessions" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q54I96-1...", "unreviewed..." ], [ "Q54PT0-1...", "unreviewed..." ] ], "headers": [ "uniprotkb_ca...", "status..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "status" }, { "type": "string", "label": "gene_name" }, { "type": "string", "label": "reviewed_isoforms" }, { "type": "string", "label": "unreviewed_isoforms" } ], [ "Q54I96-1", "unreviewed", "", "", "Q54I96-1" ], [ "Q54PT0-1", "unreviewed", "", "", "Q54PT0-1" ], [ "Q54PT1-1", "reviewed", "gdap2", "Q54PT1-1", "" ], [ "Q54PT2-1", "reviewed", "vps4", "Q54PT2-1", "" ], [ "Q54PT3-1", "reviewed", "cyp556A1", "Q54PT3-1", "" ], [ "Q54PT4-1", "unreviewed", "", "", "Q54PT4-1" ], [ "Q54PT5-1", "unreviewed", "", "", "Q54PT5-1" ], [ "Q54PT6-1", "reviewed", "etfrf1", "Q54PT6-1", "" ], [ "Q54PT7-1", "unreviewed", "", "", "Q54PT7-1" ], [ "Q54PT8-1", "unreviewed", "", "", "Q54PT8-1" ], [ "Q54PT9-1", "reviewed", "mrfA", "Q54PT9-1", "" ], [ "Q54N46-1", "unreviewed", "", "", "Q54N46-1" ], [ "Q54E35-1", "reviewed", "gacEE", "Q54E35-1", "" ], [ "Q54E36-1", "reviewed", "xpo2", "Q54E36-1", "" ], [ "Q54N45-1", "reviewed", "asf1", "Q54N45-1", "" ], [ "Q54N42-1", "unreviewed", "", "", "Q54N42-1" ], [ "Q54N43-1", "unreviewed", "", "", "Q54N43-1" ], [ "Q553Q9-1", "unreviewed", "", "", "Q553Q9-1" ], [ "Q54E33-1", "reviewed", "dnaaf10", "Q54E33-1", "" ], [ "Q553Q7-1", "unreviewed", "", "", "Q553Q7-1" ], [ "Q553Q6-1", "unreviewed", "", "", "Q553Q6-1" ], [ "Q553Q5-1", "unreviewed", "", "", "Q553Q5-1" ], [ "Q553Q4-1", "unreviewed", "", "", "Q553Q4-1" ], [ "Q553Q3-1", "unreviewed", "", "", "Q553Q3-1" ], [ "Q553Q2-1", "unreviewed", "", "", "Q553Q2-1" ], [ "Q54N48-1", "reviewed", "clp1", "Q54N48-1", "" ], [ "Q553Q0-1", "unreviewed", "", "", "Q553Q0-1" ], [ "Q86L23-1", "unreviewed", "", "", "Q86L23-1" ], [ "P11872-1", "reviewed", "prtB", "P11872-1", "" ], [ "P11874-1", "reviewed", "rpl7", "P11874-1", "" ], [ "Q9NKX1-1", "reviewed", "grp94", "Q9NKX1-1", "" ], [ "Q54IZ4-1", "unreviewed", "", "", "Q54IZ4-1" ], [ "Q9TGM4-1", "reviewed", "ai4", "Q9TGM4-1", "" ], [ "Q550S3-1", "unreviewed", "", "", "Q550S3-1" ], [ "Q8T2Q8-1", "reviewed", "", "Q8T2Q8-1", "" ], [ "Q550S9-1", "reviewed", "tlcd4b", "Q550S9-1", "" ], [ "Q8T2Q9-1", "unreviewed", "", "", "Q8T2Q9-1" ], [ "Q54CV9-1", "unreviewed", "", "", "Q54CV9-1" ], [ "Q54CV8-1", "unreviewed", "", "", "Q54CV8-1" ], [ "Q55FU5-1", "reviewed", "", "Q55FU5-1", "" ], [ "Q54CV1-1", "unreviewed", "", "", "Q54CV1-1" ], [ "Q54CV0-1", "unreviewed", "", "", "Q54CV0-1" ], [ "Q54CV3-1", "reviewed", "", "Q54CV3-1", "" ], [ "Q54CV2-1", "unreviewed", "", "", "Q54CV2-1" ], [ "Q54CV5-1", "reviewed", "bub1", "Q54CV5-1", "" ], [ "Q55ES3-1", "unreviewed", "", "", "Q55ES3-1" ], [ "Q54CV7-1", "unreviewed", "", "", "Q54CV7-1" ], [ "Q54CV6-1", "unreviewed", "", "", "Q54CV6-1" ], [ "Q550F6-1", "reviewed", "dcx", "Q550F6-1", "" ], [ "Q54HR3-1", "unreviewed", "", "", "Q54HR3-1" ], [ "Q54IZ2-1", "unreviewed", "", "", "Q54IZ2-1" ], [ "P34045-1", "reviewed", "gpaG", "P34045-1", "" ], [ "P34044-1", "reviewed", "gpaF", "P34044-1", "" ], [ "Q54HR1-1", "unreviewed", "", "", "Q54HR1-1" ], [ "P34043-1", "reviewed", "gpaE", "P34043-1", "" ], [ "P34042-1", "reviewed", "gpaD", "P34042-1", "" ], [ "Q55GG1-1", "reviewed", "cpnD", "Q55GG1-1", "" ], [ "Q55ES2-1", "unreviewed", "", "", "Q55ES2-1" ], [ "Q557I1-1", "reviewed", "nfyc-2", "Q557I1-1", "" ], [ "Q54HR7-1", "unreviewed", "", "", "Q54HR7-1" ], [ "Q555G3-1", "unreviewed", "", "", "Q555G3-1" ], [ "Q555G2-1", "unreviewed", "", "", "Q555G2-1" ], [ "Q555G0-1", "unreviewed", "", "", "Q555G0-1" ], [ "Q55GG3-1", "unreviewed", "", "", "Q55GG3-1" ], [ "Q555G5-1", "unreviewed", "", "", "Q555G5-1" ], [ "Q555G4-1", "unreviewed", "", "", "Q555G4-1" ], [ "Q555G9-1", "unreviewed", "cdc73", "", "Q555G9-1" ], [ "Q54HR5-1", "unreviewed", "", "", "Q54HR5-1" ], [ "C7G013-1", "unreviewed", "", "", "C7G013-1" ], [ "P36411-1", "reviewed", "rab7A", "P36411-1", "" ], [ "Q55ES1-1", "unreviewed", "", "", "Q55ES1-1" ], [ "P36412-1", "reviewed", "rab11A", "P36412-1", "" ], [ "P36413-1", "reviewed", "pdhC", "P36413-1", "" ], [ "P36415-1", "reviewed", "hspB", "P36415-1", "" ], [ "Q55FY1-1", "unreviewed", "", "", "Q55FY1-1" ], [ "Q6S002-1", "reviewed", "kif10", "Q6S002-1", "" ], [ "Q6S003-1", "reviewed", "kif8", "Q6S003-1", "" ], [ "Q6S000-1", "reviewed", "kif12", "Q6S000-1", "" ], [ "Q6S001-1", "reviewed", "kif11", "Q6S001-1", "" ], [ "Q54YH9-1", "unreviewed", "", "", "Q54YH9-1" ], [ "Q54YH8-1", "unreviewed", "", "", "Q54YH8-1" ], [ "Q6S004-1", "reviewed", "kif6", "Q6S004-1", "" ], [ "Q7KWM6-1", "unreviewed", "emg1", "", "Q7KWM6-1" ], [ "Q54YH5-1", "unreviewed", "", "", "Q54YH5-1" ] ] }, "readme": "Name\n - Dicty Proteome Masterlist (UniProtKB)\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - 2024-01-09T04:51:36\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Dicty Proteome Materlist dataset contains dicty [taxid:44689] UniProtKB canonical accessions mapped to the reviewed (SwissProt) and unreviewed (TrEMBL) UniProtKB isoforms via gene grouping. The dataset is derived from 2019_09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - canonical accessions\n - gene name\n - protein isoforms\n - complete proteome\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB proteome data from the triplestore containing triples from nt file to map UniProtKB canonical accessions to reviewed and unreviewed isoforms via gene grouping\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-dictyostelium-discoideum.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-dictyostelium-discoideum.nt\n Output Subdomain\n Name: dicty_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_masterlist.csv\n Name: dicty_protein_masterlist.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_masterlist.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"12718\"\n Name: \"status\"\n Description: \"Status of the protein record in UniProtKB database that can be reviewed for UniProtKB/Swiss-Prot entry or unreviewed for UniProtKB/TrEMBL entry\"\n Unique Values: \"2\"\n Name: \"gene_name\"\n Description: \"\"Official gene name/symbol assigned to the gene. Human gene name/symbol are approved by the HUGO Gene Nomenclature Committee (HGNC) and mouse gene name are approved by the Mouse Genome Informatics (MGI)\"\n Unique Values: \"3822\"\n Name: \"reviewed_isoforms\"\n Description: \"\"Protein records from UniProtKB/SwissProt database that have been manually curated and annotated based on experimental results\"\n Unique Values: \"4155\"\n Name: \"unreviewed_isoforms\"\n Description: \"Protein records from UniProtKB/TrEMBL database that have been computationally annotated\"\n Unique Values: \"8593\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/dicty_protein_masterlist.csv" }