{ "bcoid": "GLY_000846", "title": "Dicty Protein Information (UniProtKB)", "description": "The Dicty Protein Information dataset contains dicty [taxid:44689] UniProtKB canonical accessions with ...", "filename": "dicty_protein_info_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Protein" ], "tag": [ "Protein Information" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q556Q9-1...", "Q556Q9_DICDI..." ], [ "Q8T1B5-1...", "Q8T1B5_DICDI..." ] ], "headers": [ "uniprotkb_ca...", "uniprotkb_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "uniprotkb_id" }, { "type": "string", "label": "uniprotkb_protein_mass" }, { "type": "string", "label": "uniprotkb_protein_length" } ], [ "Q556Q9-1", "Q556Q9_DICDI", "4396", "40" ], [ "Q8T1B5-1", "Q8T1B5_DICDI", "36629", "314" ], [ "Q54TK2-1", "Q54TK2_DICDI", "46402", "403" ], [ "Q54QL5-1", "Y5670_DICDI", "7417", "62" ], [ "Q54RJ9-1", "Q54RJ9_DICDI", "136639", "1230" ], [ "Q54Y90-1", "Y0133_DICDI", "120397", "1090" ], [ "Q54DW2-1", "ERGI3_DICDI", "42921", "383" ], [ "Q54EU4-1", "Q54EU4_DICDI", "36411", "316" ], [ "Q55GT6-1", "Q55GT6_DICDI", "44634", "375" ], [ "Q54FJ4-1", "Q54FJ4_DICDI", "14193", "125" ], [ "Q54SW3-1", "GRLF_DICDI", "86464", "770" ], [ "Q54DY8-1", "Q54DY8_DICDI", "163266", "1445" ], [ "Q54HF2-1", "Q54HF2_DICDI", "54299", "465" ], [ "Q54KL9-1", "Y9209_DICDI", "7704", "70" ], [ "Q54CG2-1", "Q54CG2_DICDI", "27084", "237" ], [ "Q550W4-1", "Q550W4_DICDI", "40066", "361" ], [ "Q54EB4-1", "Y4006_DICDI", "41538", "357" ], [ "Q54NR2-1", "Q54NR2_DICDI", "35006", "305" ], [ "Q54GY8-1", "RAB18_DICDI", "22972", "202" ], [ "Q54LH0-1", "Q54LH0_DICDI", "45090", "396" ], [ "Q54ME7-1", "TMM33_DICDI", "33485", "290" ], [ "Q54YE7-1", "Q54YE7_DICDI", "24892", "225" ], [ "Q54XU4-1", "Q54XU4_DICDI", "26454", "225" ], [ "P14325-1", "SYQ_DICDI", "88426", "779" ], [ "Q86AF2-1", "Y6864_DICDI", "140966", "1212" ], [ "Q54FT0-1", "Q54FT0_DICDI", "92833", "815" ], [ "Q556U2-1", "Q556U2_DICDI", "16550", "135" ], [ "Q550Z7-1", "Q550Z7_DICDI", "5873", "53" ], [ "Q54B06-1", "Q54B06_DICDI", "6375", "54" ], [ "Q550K4-1", "Q550K4_DICDI", "23464", "207" ], [ "Q55GI7-1", "Q55GI7_DICDI", "99996", "890" ], [ "C7FZV9-1", "C7FZV9_DICDI", "178534", "1494" ], [ "Q54CV0-1", "Q54CV0_DICDI", "11269", "97" ], [ "Q54P15-1", "Q54P15_DICDI", "154477", "1379" ], [ "Q551C0-1", "Q551C0_DICDI", "105068", "944" ], [ "Q54F91-1", "Q54F91_DICDI", "7377", "72" ], [ "Q55AJ1-1", "Q55AJ1_DICDI", "89682", "814" ], [ "Q55GJ3-1", "NCA2_DICDI", "107945", "923" ], [ "Q55DQ2-1", "ABCGB_DICDI", "164045", "1442" ], [ "Q54BK6-1", "Q54BK6_DICDI", "13326", "116" ], [ "Q55BJ1-1", "Q55BJ1_DICDI", "20874", "185" ], [ "Q86K43-1", "Q86K43_DICDI", "40236", "349" ], [ "Q553Y8-1", "Q553Y8_DICDI", "107382", "941" ], [ "Q54IP6-1", "Q54IP6_DICDI", "45210", "398" ], [ "Q54TR1-1", "CFAD_DICDI", "58638", "531" ], [ "Q54DK4-1", "AK1_DICDI", "154085", "1352" ], [ "Q54G98-1", "Q54G98_DICDI", "44974", "388" ], [ "Q54NY0-1", "Q54NY0_DICDI", "6144", "59" ], [ "Q55DK2-1", "Y9628_DICDI", "82091", "737" ], [ "Q86KL0-1", "Q86KL0_DICDI", "24202", "220" ], [ "Q55BD7-1", "Q55BD7_DICDI", "4531", "41" ], [ "Q54B45-1", "Q54B45_DICDI", "132728", "1169" ], [ "Q54BK5-1", "Q54BK5_DICDI", "21130", "187" ], [ "Q86A00-1", "Q86A00_DICDI", "91574", "851" ], [ "Q54B86-1", "Q54B86_DICDI", "43144", "372" ], [ "B0G156-1", "B0G156_DICDI", "28087", "254" ], [ "Q54BW6-1", "TTC27_DICDI", "98424", "853" ], [ "Q86CZ2-1", "DHKK_DICDI", "137716", "1213" ], [ "Q54RS5-1", "Q54RS5_DICDI", "74843", "650" ], [ "Q54P95-1", "COX6B_DICDI", "9115", "78" ], [ "Q54C60-1", "Q54C60_DICDI", "16498", "143" ], [ "Q54YK2-1", "Q54YK2_DICDI", "79925", "717" ], [ "P18161-1", "SPLB_DICDI", "127437", "1155" ], [ "Q54X11-1", "Q54X11_DICDI", "61816", "567" ], [ "Q54K76-1", "CUTC_DICDI", "30879", "280" ], [ "P42522-1", "MYOC_DICDI", "132965", "1182" ], [ "Q86HD8-1", "Q86HD8_DICDI", "93633", "816" ], [ "Q54G06-1", "XPP1_DICDI", "71393", "627" ], [ "Q54Q36-1", "Q54Q36_DICDI", "13696", "124" ], [ "Q54E05-1", "Q54E05_DICDI", "53581", "471" ], [ "Q54ID1-1", "Q54ID1_DICDI", "11160", "97" ], [ "Q558Y6-1", "PKS14_DICDI", "340936", "2998" ], [ "Q54SH1-1", "Q54SH1_DICDI", "146457", "1346" ], [ "Q54VT2-1", "Q54VT2_DICDI", "5536", "47" ], [ "Q54IP8-1", "Q54IP8_DICDI", "36443", "323" ], [ "Q54H78-1", "Q54H78_DICDI", "6518", "55" ], [ "Q54YQ8-1", "Q54YQ8_DICDI", "62737", "574" ], [ "Q55B21-1", "Q55B21_DICDI", "108522", "910" ], [ "Q55DW1-1", "Q55DW1_DICDI", "9300", "75" ], [ "Q54V75-1", "Q54V75_DICDI", "71414", "603" ], [ "Q54U68-1", "Q54U68_DICDI", "6960", "59" ], [ "Q54AZ9-1", "Q54AZ9_DICDI", "52887", "454" ], [ "Q54U23-1", "Q54U23_DICDI", "241690", "2167" ], [ "Q55GF5-1", "Q55GF5_DICDI", "134709", "1204" ] ] }, "readme": "Name\n - Dicty Protein Information (UniProtKB)\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - 2024-01-09T04:49:41\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Dicty Protein Information dataset contains dicty [taxid:44689] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - UniProtKB entry id\n - UniProtKB mnemonic name\n - protein length\n - protein mass\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts it into a dataset as a csv format\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-dictyostelium-discoideum.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-dictyostelium-discoideum.nt\n Output Subdomain\n Name: dicty_protein_info_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_info_uniprotkb.csv\n Name: dicty_protein_info_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_info_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"12718\"\n Name: \"uniprotkb_id\"\n Description: \"The entry name or mnemonic identifier assigned to the protein accession that consists of up to 11 uppercase alphanumeric characters for UniProtKB/Swiss-Prot entry and up to 16 uppercase alphanumeric characters for UniProtKB/TrEMBL entry with a defined naming convention\"\n Unique Values: \"12718\"\n Name: \"uniprotkb_protein_mass\"\n Description: \"Molecular Mass of the protein in Daltons (Da)\"\n Unique Values: \"12072\"\n Name: \"uniprotkb_protein_length\"\n Description: \"Length of the protein sequence\"\n Unique Values: \"1840\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/dicty_protein_info_uniprotkb.csv" }