{ "bcoid": "GLY_000841", "title": "Dicty Glycohydrolases", "description": "The Dicty Glycohydrolases dataset contains a list of dicty [taxid:44689] glycohydrolases derived from ...", "filename": "dicty_protein_glycohydrolase.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Protein" ], "tag": [ "Glycohydrolases" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P13723-1...", "Dictyosteliu..." ], [ "P34098-1...", "Dictyosteliu..." ] ], "headers": [ "uniprotkb_ca...", "species..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "species" }, { "type": "string", "label": "status" }, { "type": "string", "label": "gene_symbol" }, { "type": "string", "label": "uniprotkb_protein_name" }, { "type": "string", "label": "ec_number" }, { "type": "string", "label": "brenda_ec_number" }, { "type": "string", "label": "cazy_gt_family" }, { "type": "string", "label": "interpro_id" }, { "type": "string", "label": "pfam_ac" }, { "type": "string", "label": "go_molecular_function" } ], [ "P13723-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "hexa1", "Beta-hexosaminidase subunit A1 (EC 3.2.1.52) (Beta-N-acetylhexosaminidase subunit A1) (N-acetyl-beta-glucosaminidase subunit A1)", "3.2.1.52", "", "GH20", "IPR025705|IPR015883|IPR017853|IPR029018|IPR029019", "PF00728|PF14845", "beta-N-acetylhexosaminidase activity [GO:0004563]| N-acetyl-beta-D-galactosaminidase activity [GO:0102148]" ], [ "P34098-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "manA", "Lysosomal alpha-mannosidase (Laman) (EC 3.2.1.24) (Alpha-D-mannoside mannohydrolase) (Alpha-mannosidase A) [Cleaved into: Alpha-mannosidase 60 kDa subunit; Alpha-mannosidase 58 kDa subunit]", "3.2.1.24", "", "GH38", "IPR011013|IPR011330|IPR011682|IPR015341|IPR037094|IPR000602|IPR027291|IPR028995|IPR013780", "PF09261|PF07748|PF01074", "alpha-mannosidase activity [GO:0004559]| carbohydrate binding [GO:0030246]| metal ion binding [GO:0046872]" ], [ "Q556R7-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "cf50-1; cf50-2", "Counting factor 50 (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase 1) (GH family 25 lysozyme 1)", "3.2.1.17", "", "", "IPR002053|IPR017853", "PF01183", "lysozyme activity [GO:0003796]" ], [ "Q8T1G4-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "alyA", "Lysozyme A (EC 3.2.1.n3) (1,4-beta-N-acetylmuramidase A)", "3.2.1.n3", "", "", "", "", "lysozyme activity [GO:0003796]" ], [ "Q94502-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "modA", "Neutral alpha-glucosidase AB (EC 3.2.1.207) (Alpha-glucosidase 2) (Glucosidase II subunit alpha) (Protein post-translational modification mutant A)", "3.2.1.207", "3.2.1.207", "GH31", "IPR011013|IPR000322|IPR030458|IPR025887|IPR013780|IPR017853", "PF13802|PF01055", "alpha-glucosidase activity [GO:0090599]| carbohydrate binding [GO:0030246]| glucan 1,3-alpha-glucosidase activity [GO:0033919]" ], [ "P10901-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "alfA", "Alpha-L-fucosidase (EC 3.2.1.51) (Alpha-L-fucoside fucohydrolase)", "3.2.1.51", "3.2.1.51", "GH29", "IPR016286|IPR031919|IPR000933|IPR018526|IPR013780|IPR017853", "PF01120|PF16757", "1,6-alpha-L-fucosidase activity [GO:0033938]| alpha-L-fucosidase activity [GO:0004560]" ], [ "P22699-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "celA", "Endoglucanase (EC 3.2.1.4) (Cellulase) (Endo-1,4-beta-glucanase) (Spore germination protein 270-6)", "3.2.1.4", "", "CBM8|GH9", "IPR008928|IPR012341|IPR001701|IPR033126|IPR018221", "PF00759", "cellulase activity [GO:0008810]| cellulose binding [GO:0030248]" ], [ "Q23892-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "gluA", "Lysosomal beta glucosidase (EC 3.2.1.21)", "3.2.1.21", "", "GH3", "IPR026891|IPR002772|IPR036881|IPR001764|IPR036962|IPR017853|IPR013783", "PF14310|PF00933|PF01915", "beta-glucosidase activity [GO:0008422]| scopolin beta-glucosidase activity [GO:0102483]" ], [ "Q1ZXI8-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "manE", "Alpha-mannosidase E (EC 3.2.1.24)", "3.2.1.24", "", "", "IPR011013|IPR011330|IPR015341|IPR037094|IPR000602|IPR027291|IPR028995|IPR013780", "PF09261|PF01074", "alpha-mannosidase activity [GO:0004559]| carbohydrate binding [GO:0030246]| metal ion binding [GO:0046872]" ], [ "Q54BL8-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "", "Probable GH family 25 lysozyme 5 (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase 5)", "3.2.1.17", "", "", "IPR002053|IPR017853", "PF01183", "lysozyme activity [GO:0003796]" ], [ "Q54BQ8-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "", "Probable GH family 25 lysozyme 4 (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase 4)", "3.2.1.17", "", "", "IPR002053|IPR017853", "PF01183", "lysozyme activity [GO:0003796]" ], [ "Q54GE1-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "glb1", "Beta-galactosidase 1 (EC 3.2.1.23) (Acid beta-galactosidase 1) (Lactase 1)", "3.2.1.23", "", "", "IPR026283|IPR008979|IPR031330|IPR019801|IPR001944|IPR017853", "PF01301", "beta-galactosidase activity [GO:0004565]" ], [ "Q54K55-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "hexb1", "Beta-hexosaminidase subunit B1 (EC 3.2.1.52) (Beta-N-acetylhexosaminidase subunit B1) (N-acetyl-beta-glucosaminidase subunit B1)", "3.2.1.52", "", "", "IPR025705|IPR015883|IPR017853|IPR029018|IPR029019", "PF00728|PF14845", "beta-N-acetylhexosaminidase activity [GO:0004563]| N-acetyl-beta-D-galactosaminidase activity [GO:0102148]" ], [ "Q54K56-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "hexb2", "Beta-hexosaminidase subunit B2 (EC 3.2.1.52) (Beta-N-acetylhexosaminidase subunit B2) (N-acetyl-beta-glucosaminidase subunit B2)", "3.2.1.52", "", "", "IPR025705|IPR015883|IPR017853|IPR029018|IPR029019", "PF00728|PF14845", "beta-N-acetylhexosaminidase activity [GO:0004563]| N-acetyl-beta-D-galactosaminidase activity [GO:0102148]" ], [ "Q54KN4-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "manF", "Alpha-mannosidase F (EC 3.2.1.24)", "3.2.1.24", "", "", "IPR011013|IPR011330|IPR015341|IPR037094|IPR000602|IPR027291|IPR028995", "PF09261|PF01074", "alpha-mannosidase activity [GO:0004559]| carbohydrate binding [GO:0030246]| metal ion binding [GO:0046872]" ], [ "Q54KX5-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "pgghg", "Protein-glucosylgalactosylhydroxylysine glucosidase (EC 3.2.1.107) (Acid trehalase-like protein 1)", "3.2.1.107", "", "", "IPR008928|IPR012341|IPR005195", "PF03632", "hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]| protein-glucosylgalactosylhydroxylysine glucosidase activity [GO:0047402]" ], [ "Q54SC9-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "hexa2", "Beta-hexosaminidase subunit A2 (EC 3.2.1.52) (Beta-N-acetylhexosaminidase subunit A2) (N-acetyl-beta-glucosaminidase subunit A2)", "3.2.1.52", "", "", "IPR025705|IPR015883|IPR017853|IPR029018|IPR029019", "PF00728|PF14845", "beta-N-acetylhexosaminidase activity [GO:0004563]| N-acetyl-beta-D-galactosaminidase activity [GO:0102148]" ], [ "Q54YC4-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "manD", "Alpha-mannosidase D (EC 3.2.1.24)", "3.2.1.24", "", "", "IPR011013|IPR011330|IPR015341|IPR037094|IPR000602|IPR027291|IPR028995|IPR013780", "PF09261|PF01074", "alpha-mannosidase activity [GO:0004559]| carbohydrate binding [GO:0030246]| metal ion binding [GO:0046872]" ], [ "Q54YF7-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "manB", "Alpha-mannosidase B (EC 3.2.1.24)", "3.2.1.24", "", "", "IPR011013|IPR041147|IPR011330|IPR011682|IPR015341|IPR037094|IPR000602|IPR027291|IPR028995|IPR013780", "PF09261|PF17677|PF07748|PF01074", "alpha-mannosidase activity [GO:0004559]| carbohydrate binding [GO:0030246]| metal ion binding [GO:0046872]" ], [ "Q556Y7-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "alyD-1; alyD-2", "Lysozyme D (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase D)", "3.2.1.17", "", "", "", "", "lysozyme activity [GO:0003796]" ], [ "Q55ER0-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "manC", "Alpha-mannosidase C (EC 3.2.1.24)", "3.2.1.24", "", "", "IPR011013|IPR011330|IPR015341|IPR037094|IPR000602|IPR027291|IPR028995|IPR013780", "PF09261|PF01074", "alpha-mannosidase activity [GO:0004559]| carbohydrate binding [GO:0030246]| metal ion binding [GO:0046872]" ], [ "Q7KWM9-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "iunH", "Probable ribonucleoside hydrolase (EC 3.2.2.1) (EC 3.2.2.8)", "3.2.2.1|3.2.2.8", "", "", "IPR001910|IPR023186|IPR036452", "PF01156", "hydrolase activity, acting on glycosyl bonds [GO:0016798]| metal ion binding [GO:0046872]| purine nucleosidase activity [GO:0008477]| ribosylpyrimidine nucleosidase activity [GO:0050263]" ], [ "Q7KWW8-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "ctbs1", "Probable di-N-acetylchitobiase 1 (EC 3.2.1.-)", "3.2.1.-", "", "", "IPR011583|IPR029070|IPR047898|IPR001223|IPR017853", "PF00704", "chitin binding [GO:0008061]| hydrolase activity, acting on glycosyl bonds [GO:0016798]" ], [ "Q86KC1-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "", "Probable GH family 25 lysozyme 2 (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase 2)", "3.2.1.17", "", "", "IPR002053|IPR017853", "PF01183", "lysozyme activity [GO:0003796]" ], [ "Q8T1G5-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "alyC", "Lysozyme C (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase C)", "3.2.1.17", "", "", "", "", "lysozyme activity [GO:0003796]" ], [ "Q8T1G6-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "alyB", "Lysozyme B (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase B)", "3.2.1.17", "", "", "", "", "lysozyme activity [GO:0003796]" ], [ "Q8T293-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "ctbs2", "Probable di-N-acetylchitobiase 2 (EC 3.2.1.-)", "3.2.1.-", "", "GH18", "IPR011583|IPR029070|IPR047898|IPR001223|IPR017853", "PF00704", "chitin binding [GO:0008061]| hydrolase activity, acting on glycosyl bonds [GO:0016798]" ], [ "Q8T2I5-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "", "Probable GH family 25 lysozyme 3 (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase 3)", "3.2.1.17", "", "", "IPR002053|IPR017853", "PF01183", "lysozyme activity [GO:0003796]" ], [ "Q54K67-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "manG", "Alpha-mannosidase G (EC 3.2.1.24)", "3.2.1.24", "", "", "IPR011013|IPR041147|IPR011330|IPR011682|IPR015341|IPR037094|IPR000602|IPR027291|IPR028995", "PF09261|PF17677|PF07748|PF01074", "alpha-mannosidase activity [GO:0004559]| carbohydrate binding [GO:0030246]| metal ion binding [GO:0046872]" ], [ "Q54KF6-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "", "Protein DDB_G0287365", "", "", "", "IPR019316", "PF10162", "hydrolase activity, acting on glycosyl bonds [GO:0016798]" ], [ "Q54MV6-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "glb2", "Probable beta-galactosidase 2 (Lactase 2) (EC 3.2.1.23)", "3.2.1.23", "", "", "IPR008979|IPR031330|IPR019801|IPR001944|IPR017853", "PF01301", "beta-galactosidase activity [GO:0004565]" ], [ "Q54QZ5-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "treh", "Trehalase (EC 3.2.1.28) (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase)", "3.2.1.28", "", "", "IPR008928|IPR012341|IPR001661", "PF01204", "alpha,alpha-trehalase activity [GO:0004555]" ], [ "Q556F2-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "", "Probable T4-type lysozyme 1 (EC 3.2.1.17) (Muramidase)", "3.2.1.17", "", "GH24", "IPR002196|IPR023346|IPR023347|IPR001165", "PF00959", "lysozyme activity [GO:0003796]" ], [ "Q55B10-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "melA", "Probable alpha-galactosidase (EC 3.2.1.22) (Alpha-D-galactoside galactohydrolase) (Melibiase)", "3.2.1.22", "", "", "IPR013785|IPR002241|IPR013780|IPR017853|IPR041233", "PF16499|PF17801", "alpha-galactosidase activity [GO:0004557]" ], [ "Q86AA1-1", "Dictyostelium discoideum (Social amoeba)", "reviewed", "", "Probable T4-type lysozyme 2 (EC 3.2.1.17) (Muramidase)", "3.2.1.17", "", "GH24", "IPR002196|IPR023346|IPR023347|IPR001165", "PF00959", "lysozyme activity [GO:0003796]" ] ] }, "readme": "Name\n - Dicty Glycohydrolases\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - 2024-01-09T04:38:49\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Dicty Glycohydrolases dataset contains a list of dicty [taxid:44689] glycohydrolases derived from UniProtKB database using advanced search and other databases including CAZy, InterPro and Pfam. . If you use this dataset please provide proper attribution to UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - glycohydrolase\n - glycosidase\n - EC Number\n - CAZy\n\n Pipeline Steps\n - Step-1: The script maps and replaces the UniProtKb accession to the UniProtKB canonical accession\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: dicty_protein_glycohydrolase.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/compiled/dicty_protein_glycohydrolase.csv\n Name: dicty_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_masterlist.csv\n Output Subdomain\n Name: dicty_protein_glycohydrolase.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_glycohydrolase.csv\n Name: dicty_protein_glycohydrolase.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_glycohydrolase.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"35\"\n Name: \"species\"\n Description: \"Species of the protein.\"\n Unique Values: \"1\"\n Name: \"status\"\n Description: \"Status of the protein record in UniProtKB database that can be reviewed for UniProtKB/Swiss-Prot entry or unreviewed for UniProtKB/TrEMBL entry\"\n Unique Values: \"1\"\n Name: \"gene_symbol\"\n Description: \"\"Official gene name/symbol assigned to the gene. Human gene names/symbols are approved by the HUGO Gene Nomenclature Committee (HGNC)\"\n Unique Values: \"29\"\n Name: \"uniprotkb_protein_name\"\n Description: \"Name of the protein in UniProtKB database\"\n Unique Values: \"35\"\n Name: \"ec_number\"\n Description: \"Enzyme Commision number assigned to an enzyme by Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"15\"\n Name: \"brenda_ec_number\"\n Description: \"Enzyme Commission (EC) number assigned to enzyme in BRENDA database\"\n Unique Values: \"3\"\n Name: \"cazy_gt_family\"\n Description: \"The Family assigned to glycosyltransferase in the CAZy (Carbohydrate-Active enZYmes) database\"\n Unique Values: \"9\"\n Name: \"interpro_id\"\n Description: \"InterPro Identifier\"\n Unique Values: \"21\"\n Name: \"pfam_ac\"\n Description: \"Accession assigned to the protein family in the Pfam database\"\n Unique Values: \"18\"\n Name: \"go_molecular_function\"\n Description: \"\"The elemental activities of a gene product at the molecular level\"\n Unique Values: \"14\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/dicty_protein_glycohydrolase.csv" }