{ "bcoid": "GLY_000835", "title": "Dicty Protein Citations (UniProtKB)", "description": "The Dicty Protein Citations dataset contains publication information for dicty [taxid:44689] UniProtKB ...", "filename": "dicty_protein_citations_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Protein" ], "tag": [ "Protein Citations" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q54IM7-1...", "Minimal F-ac..." ], [ "Q54D08-1...", "TOR complex ..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "Q54IM7-1", "Minimal F-actin cytoskeletal system for planar supported phospholipid bilayers.", "Langmuir : the ACS journal of surfaces and colloids", "2008-06-01", "Barfoot Richard J, Sheikh Khizar H, Johnson Benjamin R G, Colyer John, Miles Robert E, Jeuken Lars J C, Bushby Richard J, Evans Stephen D", "protein_xref_pubmed", "18522444", "protein_xref_uniprotkb", "Q54IM7" ], [ "Q54D08-1", "TOR complex 2 integrates cell movement during chemotaxis and signal relay in Dictyostelium.", "Molecular biology of the cell", "2005-10", "Lee Susan, Comer Frank I, Sasaki Atsuo, McLeod Ian X, Duong Yung, Okumura Koichi, Yates John R, Parent Carole A, Firtel Richard A", "protein_xref_pubmed", "16079174", "protein_xref_uniprotkb", "Q54D08" ], [ "Q8MQU6-1", "Disruption of the peroxisomal citrate synthase CshA affects cell growth and multicellular development in Dictyostelium discoideum.", "Molecular microbiology", "2004-07", "Huang Ying-Chieh, Chen Yi-Hsing, Lo San-Ren, Liu Chia-I, Wang Cheng-Wei, Chang Wen-Tsan", "protein_xref_pubmed", "15225305", "protein_xref_uniprotkb", "Q8MQU6" ], [ "O60999-1", "Regulated protein degradation controls PKA function and cell-type differentiation in Dictyostelium.", "Genes & development", "2001-06-01", "Mohanty S, Lee S, Yadava N, Dealy M J, Johnson R S, Firtel R A", "protein_xref_pubmed", "11390363", "protein_xref_uniprotkb", "O60999" ], [ "Q54PT9-1", "An orthologue of the Myelin-gene Regulatory Transcription Factor regulates Dictyostelium prestalk differentiation.", "The International journal of developmental biology", "2012", "Senoo Hiroshi, Wang Hong-Yu, Araki Tsuyoshi, Williams Jeffrey G, Fukuzawa Masashi", "protein_xref_pubmed", "22811266", "protein_xref_uniprotkb", "Q54PT9" ], [ "Q86AV4-1", "Plant expansins are a complex multigene family with an ancient evolutionary origin.", "Plant physiology", "2002-03", "Li Yi, Darley Catherine P, Ongaro Ver\u00f3nica, Fleming Andrew, Schipper Ori, Baldauf Sandra L, McQueen-Mason Simon J", "protein_xref_pubmed", "11891242", "protein_xref_uniprotkb", "Q86AV4" ], [ "Q86AV4-1", "Expression of a family of expansin-like proteins during the development of Dictyostelium discoideum.", "FEBS letters", "2003-07-10", "Darley Catherine P, Li Yi, Schaap Pauline, McQueen-Mason Simon J", "protein_xref_pubmed", "12832080", "protein_xref_uniprotkb", "Q86AV4" ], [ "Q54JI9-1", "Dictyostelium macroautophagy mutants vary in the severity of their developmental defects.", "The Journal of biological chemistry", "2004-04-09", "Otto Grant P, Wu Mary Y, Kazgan Nevzat, Anderson O Roger, Kessin Richard H", "protein_xref_pubmed", "14736886", "protein_xref_uniprotkb", "Q54JI9" ], [ "Q552C6-1", "Combinatorial cell-specific regulation of GSK3 directs cell differentiation and polarity in Dictyostelium.", "Development (Cambridge, England)", "2011-02", "Kim Leung, Brzostowski Joseph, Majithia Amit, Lee Nam-Sihk, McMains Vanessa, Kimmel Alan R", "protein_xref_pubmed", "21205787", "protein_xref_uniprotkb", "Q552C6" ], [ "Q550F6-1", "Functional analyses of lissencephaly-related proteins in Dictyostelium.", "Seminars in cell & developmental biology", "2011-02", "Meyer Irene, Kuhnert Oliver, Gr\u00e4f Ralph", "protein_xref_pubmed", "21034843", "protein_xref_uniprotkb", "Q550F6" ], [ "Q86K86-1", "Cytokinins induce sporulation in Dictyostelium.", "Development (Cambridge, England)", "2008-03", "Anjard Christophe, Loomis William F", "protein_xref_pubmed", "18216168", "protein_xref_uniprotkb", "Q86K86" ], [ "P03967-1", "Spatiotemporal regulation of Ras activity provides directional sensing.", "Current biology : CB", "2008-10-28", "Zhang Sheng, Charest Pascale G, Firtel Richard A", "protein_xref_pubmed", "18948008", "protein_xref_uniprotkb", "P03967" ], [ "P36412-1", "Rab11-like GTPase associates with and regulates the structure and function of the contractile vacuole system in dictyostelium.", "Journal of cell science", "2001-08", "Harris E, Yoshida K, Cardelli J, Bush J", "protein_xref_pubmed", "11686306", "protein_xref_uniprotkb", "P36412" ], [ "Q55F37-1", "Mef2A, a homologue of animal Mef2 transcription factors, regulates cell differentiation in Dictyostelium discoideum.", "BMC developmental biology", "2013-04-11", "Galardi-Castilla Mar\u00eda, Fernandez-Aguado Irene, Suarez Teresa, Sastre Leandro", "protein_xref_pubmed", "23577638", "protein_xref_uniprotkb", "Q55F37" ], [ "Q6S002-1", "Disruption of four kinesin genes in dictyostelium.", "BMC cell biology", "2008-04-22", "Nag Dilip K, Tikhonenko Irina, Soga Ikko, Koonce Michael P", "protein_xref_pubmed", "18430243", "protein_xref_uniprotkb", "Q6S002" ], [ "Q6S003-1", "Disruption of four kinesin genes in dictyostelium.", "BMC cell biology", "2008-04-22", "Nag Dilip K, Tikhonenko Irina, Soga Ikko, Koonce Michael P", "protein_xref_pubmed", "18430243", "protein_xref_uniprotkb", "Q6S003" ], [ "Q54YH4-1", "Cytokinins induce sporulation in Dictyostelium.", "Development (Cambridge, England)", "2008-03", "Anjard Christophe, Loomis William F", "protein_xref_pubmed", "18216168", "protein_xref_uniprotkb", "Q54YH4" ], [ "Q966T6-1", "Cofilin-2, a novel type of cofilin, is expressed specifically at aggregation stage of Dictyostelium discoideum development.", "Genes to cells : devoted to molecular & cellular mechanisms", "2001-10", "Aizawa H, Kishi Y, Iida K, Sameshima M, Yahara I", "protein_xref_pubmed", "11683919", "protein_xref_uniprotkb", "Q966T6" ], [ "Q9Y0T2-1", "Genetic interactions of the E3 ubiquitin ligase component FbxA with cyclic AMP metabolism and a histidine kinase signaling pathway during Dictyostelium discoideum development.", "Eukaryotic cell", "2003-06", "Tekinay Turgay, Ennis Herbert L, Wu Mary Y, Nelson Margaret, Kessin Richard H, Ratner David I", "protein_xref_pubmed", "12796307", "protein_xref_uniprotkb", "Q9Y0T2" ], [ "Q9Y0T2-1", "High relatedness maintains multicellular cooperation in a social amoeba by controlling cheater mutants.", "Proceedings of the National Academy of Sciences of the United States of America", "2007-05-22", "Gilbert Owen M, Foster Kevin R, Mehdiabadi Natasha J, Strassmann Joan E, Queller David C", "protein_xref_pubmed", "17496139", "protein_xref_uniprotkb", "Q9Y0T2" ], [ "Q9Y0T2-1", "Regulated protein degradation controls PKA function and cell-type differentiation in Dictyostelium.", "Genes & development", "2001-06-01", "Mohanty S, Lee S, Yadava N, Dealy M J, Johnson R S, Firtel R A", "protein_xref_pubmed", "11390363", "protein_xref_uniprotkb", "Q9Y0T2" ], [ "Q9Y0T2-1", "Dictyostelium amoebae lacking an F-box protein form spores rather than stalk in chimeras with wild type.", "Proceedings of the National Academy of Sciences of the United States of America", "2000-03-28", "Ennis H L, Dao D N, Pukatzki S U, Kessin R H", "protein_xref_pubmed", "10725352", "protein_xref_uniprotkb", "Q9Y0T2" ], [ "Q9Y0T2-1", "An F-Box/WD40 repeat-containing protein important for Dictyostelium cell-type proportioning, slug behaviour, and culmination.", "Developmental biology", "2000-08-01", "Nelson M K, Clark A, Abe T, Nomura A, Yadava N, Funair C J, Jermyn K A, Mohanty S, Firtel R A, Williams J G", "protein_xref_pubmed", "10898960", "protein_xref_uniprotkb", "Q9Y0T2" ], [ "Q9BIW4-1", "Functions of LIM proteins in cell polarity and chemotactic motility.", "The EMBO journal", "2002-10-15", "Khurana Bharat, Khurana Taruna, Khaire Nandkumar, Noegel Angelika A", "protein_xref_pubmed", "12374734", "protein_xref_uniprotkb", "Q9BIW4" ], [ "Q9BIW5-1", "Functions of LIM proteins in cell polarity and chemotactic motility.", "The EMBO journal", "2002-10-15", "Khurana Bharat, Khurana Taruna, Khaire Nandkumar, Noegel Angelika A", "protein_xref_pubmed", "12374734", "protein_xref_uniprotkb", "Q9BIW5" ], [ "Q54BM7-1", "Inorganic polyphosphate in Dictyostelium discoideum: influence on development, sporulation, and predation.", "Proceedings of the National Academy of Sciences of the United States of America", "2005-02-22", "Zhang Haiyu, G\u00f3mez-Garc\u00eda Mar\u00eda R, Brown Michael R W, Kornberg Arthur", "protein_xref_pubmed", "15701689", "protein_xref_uniprotkb", "Q54BM7" ], [ "Q54BM7-1", "Polyphosphate kinase 1, a conserved bacterial enzyme, in a eukaryote, Dictyostelium discoideum, with a role in cytokinesis.", "Proceedings of the National Academy of Sciences of the United States of America", "2007-10-16", "Zhang Haiyu, G\u00f3mez-Garc\u00eda Mar\u00eda R, Shi Xiaobing, Rao Narayana N, Kornberg Arthur", "protein_xref_pubmed", "17940044", "protein_xref_uniprotkb", "Q54BM7" ], [ "Q7M438-1", "Characterization and primary structure of a base non-specific and acid ribonuclease from Dictyostelium discoideum.", "Journal of biochemistry", "1998-10", "Inokuchi N, Saitoh S, Kobayashi H, Itagaki T, Koyama T, Uchiyama S, Iwama M, Ohgi K, Irie M", "protein_xref_pubmed", "9756633", "protein_xref_uniprotkb", "Q7M438" ], [ "Q7M438-1", "Comparison of base specificity and other enzymatic properties of two protozoan ribonucleases from Physarum polycephalum and Dictyostelium discoideum.", "Bioscience, biotechnology, and biochemistry", "1999-01", "Inokuchi N, Saitoh S, Kobayashi H, Itagaki T, Koyama T, Uchiyama S, Irie M", "protein_xref_pubmed", "10052134", "protein_xref_uniprotkb", "Q7M438" ], [ "Q9BPU3-1", "Characterization of a C-terminal-type kinesin-related protein from Dictyostelium discoideum.", "FEBS letters", "2000-06-09", "Iwai S, Suyama E, Adachi H, Sutoh K", "protein_xref_pubmed", "10854856", "protein_xref_uniprotkb", "Q9BPU3" ], [ "Q95UQ1-1", "A Rho GDP-dissociation inhibitor is involved in cytokinesis of Dictyostelium.", "Biochemical and biophysical research communications", "2002-08-16", "Imai Keita, Kijima Toshirou, Noda Yoichi, Sutoh Kazuo, Yoda Koji, Adachi Hiroyuki", "protein_xref_pubmed", "12163018", "protein_xref_uniprotkb", "Q95UQ1" ], [ "Q95UQ1-1", "Defects in cytokinesis, actin reorganization and the contractile vacuole in cells deficient in RhoGDI.", "The EMBO journal", "2002-09-02", "Rivero Francisco, Illenberger Daria, Somesh Baggavalli P, Dislich Heidrun, Adam Nicola, Meyer Ann-Kathrin", "protein_xref_pubmed", "12198156", "protein_xref_uniprotkb", "Q95UQ1" ], [ "Q95UQ1-1", "Microarray phenotyping places cyclase associated protein CAP at the crossroad of signaling pathways reorganizing the actin cytoskeleton in Dictyostelium.", "Experimental cell research", "2009-01-15", "Sultana Hameeda, Neelakanta Girish, Eichinger Ludwig, Rivero Francisco, Noegel Angelika A", "protein_xref_pubmed", "19010323", "protein_xref_uniprotkb", "Q95UQ1" ], [ "Q54MB9-1", "Expression of zinc transporter family genes in Dictyostelium.", "The International journal of developmental biology", "2008", "Sunaga Nobuya, Monna Meri, Shimada Nao, Tsukamoto Mai, Kawata Takefumi", "protein_xref_pubmed", "18415938", "protein_xref_uniprotkb", "Q54MB9" ], [ "P90648-1", "Identification of a protein kinase from Dictyostelium with homology to the novel catalytic domain of myosin heavy chain kinase A.", "The Journal of biological chemistry", "1997-05-02", "Clancy C E, Mendoza M G, Naismith T V, Kolman M F, Egelhoff T T", "protein_xref_pubmed", "9115238", "protein_xref_uniprotkb", "P90648" ], [ "Q54NF8-1", "PIR121 regulates pseudopod dynamics and SCAR activity in Dictyostelium.", "Current biology : CB", "2003-09-02", "Blagg Simone L, Stewart Michael, Sambles Christine, Insall Robert H", "protein_xref_pubmed", "12956949", "protein_xref_uniprotkb", "Q54NF8" ], [ "Q54NF8-1", "SCAR, a WASP-related protein, isolated as a suppressor of receptor defects in late Dictyostelium development.", "The Journal of cell biology", "1998 Sep 7", "Bear JE, Rawls JF, Saxe CL 3rd", "protein_xref_pubmed", "9732292", "protein_xref_uniprotkb", "Q54NF8" ], [ "Q54NF8-1", "The WASp-like protein scar regulates macropinocytosis, phagocytosis and endosomal membrane flow in Dictyostelium.", "Journal of cell science", "2001-07", "Seastone D J, Harris E, Temesvari L A, Bear J E, Saxe C L, Cardelli J", "protein_xref_pubmed", "11683394", "protein_xref_uniprotkb", "Q54NF8" ], [ "Q54NF8-1", "The N-terminus of Dictyostelium Scar interacts with Abi and HSPC300 and is essential for proper regulation and function.", "Molecular biology of the cell", "2007-05", "Caracino Diana, Jones Cheryl, Compton Mark, Saxe Charles L", "protein_xref_pubmed", "17314411", "protein_xref_uniprotkb", "Q54NF8" ], [ "Q54ZW0-1", "Synergistic control of cellular adhesion by transmembrane 9 proteins.", "Molecular biology of the cell", "2003-07", "Benghezal Mohammed, Cornillon Sophie, Gebbie Leigh, Alibaud Laeticia, Br\u00fcckert Franz, Letourneur Fran\u00e7ois, Cosson Pierre", "protein_xref_pubmed", "12857872", "protein_xref_uniprotkb", "Q54ZW0" ], [ "Q54TU5-1", "Analysis of the gene encoding copper/zinc superoxide dismutase homolog in Dictyostelium discoideum.", "Biological & pharmaceutical bulletin", "2002-12", "Akaza Yuya, Tsuji Atsushi, Yasukawa Hiroo", "protein_xref_pubmed", "12499634", "protein_xref_uniprotkb", "Q54TU5" ], [ "Q54NP8-1", "Disruption of four kinesin genes in dictyostelium.", "BMC cell biology", "2008-04-22", "Nag Dilip K, Tikhonenko Irina, Soga Ikko, Koonce Michael P", "protein_xref_pubmed", "18430243", "protein_xref_uniprotkb", "Q54NP8" ], [ "Q54NP6-1", "Syntaxin 7, syntaxin 8, Vti1 and VAMP7 (vesicle-associated membrane protein 7) form an active SNARE complex for early macropinocytic compartment fusion in Dictyostelium discoideum.", "The Biochemical journal", "2002-11-15", "Bogdanovic Aleksandra, Bennett Nelly, Kieffer Sylvie, Louwagie Mathilde, Morio Takahiro, Garin J\u00e9r\u00f4me, Satre Michel, Bruckert Franz", "protein_xref_pubmed", "12175335", "protein_xref_uniprotkb", "Q54NP6" ], [ "Q54J33-1", "Functional characterization of intracellular Dictyostelium discoideum P2X receptors.", "The Journal of biological chemistry", "2009-12-11", "Ludlow Melanie J, Durai Latha, Ennion Steven J", "protein_xref_pubmed", "19833731", "protein_xref_uniprotkb", "Q54J33" ], [ "O00899-1", "Dictyostelium IQGAP-related protein specifically involved in the completion of cytokinesis.", "The Journal of cell biology", "1997-05-19", "Adachi H, Takahashi Y, Hasebe T, Shirouzu M, Yokoyama S, Sutoh K", "protein_xref_pubmed", "9151691", "protein_xref_uniprotkb", "O00899" ], [ "O00899-1", "Mutational analyses of Dictyostelium IQGAP-related protein GApa: possible interaction with small GTPases in cytokinesis.", "Bioscience, biotechnology, and biochemistry", "2001-08", "Sakurai M, Adachi H, Sutoh K", "protein_xref_pubmed", "11577743", "protein_xref_uniprotkb", "O00899" ], [ "O00899-1", "Recruitment of cortexillin into the cleavage furrow is controlled by Rac1 and IQGAP-related proteins.", "The EMBO journal", "2001-07-16", "Faix J, Weber I, Mintert U, K\u00f6hler J, Lottspeich F, Marriott G", "protein_xref_pubmed", "11447112", "protein_xref_uniprotkb", "O00899" ], [ "Q8IS21-1", "A novel Dictyostelium RasGEF is required for normal endocytosis, cell motility and multicellular development.", "Current biology : CB", "2000-11-16", "Wilkins A, Chubb J R, Insall R H", "protein_xref_pubmed", "11102804", "protein_xref_uniprotkb", "Q8IS21" ], [ "Q54IL5-1", "Cloning and functional expression of UGT genes encoding sterol glucosyltransferases from Saccharomyces cerevisiae, Candida albicans, Pichia pastoris, and Dictyostelium discoideum.", "The Journal of biological chemistry", "1999-05-07", "Warnecke D, Erdmann R, Fahl A, Hube B, M\u00fcller F, Zank T, Z\u00e4hringer U, Heinz E", "protein_xref_pubmed", "10224056", "protein_xref_uniprotkb", "Q54IL5" ], [ "Q9U720-1", "The cellulose synthase gene of Dictyostelium.", "Proceedings of the National Academy of Sciences of the United States of America", "2000-02-29", "Blanton R L, Fuller D, Iranfar N, Grimson M J, Loomis W F", "protein_xref_pubmed", "10681463", "protein_xref_uniprotkb", "Q9U720" ], [ "Q8T1C6-1", "Identification of a UDP-GlcNAc:Skp1-hydroxyproline GlcNAc-transferase in the cytoplasm of Dictyostelium.", "The Journal of biological chemistry", "1999-12-17", "Teng-Umnuay P, van der Wel H, West C M", "protein_xref_pubmed", "10593934", "protein_xref_uniprotkb", "Q8T1C6" ], [ "Q8T1C6-1", "Molecular cloning and expression of a UDP-N-acetylglucosamine (GlcNAc):hydroxyproline polypeptide GlcNAc-transferase that modifies Skp1 in the cytoplasm of dictyostelium.", "The Journal of biological chemistry", "2002-11-29", "Van Der Wel Hanke, Morris Howard R, Panico Maria, Paxton Thanai, Dell Anne, Kaplan Lee, West Christopher M", "protein_xref_pubmed", "12244115", "protein_xref_uniprotkb", "Q8T1C6" ], [ "Q54B59-1", "Dissecting the functional role of polyketide synthases in Dictyostelium discoideum: biosynthesis of the differentiation regulating factor 4-methyl-5-pentylbenzene-1,3-diol.", "The Journal of biological chemistry", "2008-04-25", "Ghosh Ratna, Chhabra Arush, Phatale Pallavi A, Samrat Subodh K, Sharma Jyoti, Gosain Anuradha, Mohanty Debasisa, Saran Shweta, Gokhale Rajesh S", "protein_xref_pubmed", "18252726", "protein_xref_uniprotkb", "Q54B59" ], [ "Q54PC2-1", "Glutathione is required for growth and prespore cell differentiation in Dictyostelium.", "Developmental biology", "2005-08-15", "Kim Beom-Jun, Choi Chang-Hoon, Lee Chang-Hun, Jeong Sun-Young, Kim Ji-Sun, Kim Bo-Yeon, Yim Hyung-Soon, Kang Sa-Ouk", "protein_xref_pubmed", "15993406", "protein_xref_uniprotkb", "Q54PC2" ], [ "Q23925-1", "Precocious sporulation and developmental lethality in yelA null mutants of Dictyostelium.", "Developmental genetics", "1997", "Osherov N, Wang N, Loomis W F", "protein_xref_pubmed", "9254905", "protein_xref_uniprotkb", "Q23925" ], [ "P13773-1", "Switching of chemoattractant receptors programs development and morphogenesis in Dictyostelium: receptor subtypes activate common responses at different agonist concentrations.", "Developmental biology", "1998-05-01", "Kim J Y, Borleis J A, Devreotes P N", "protein_xref_pubmed", "9578623", "protein_xref_uniprotkb", "P13773" ], [ "P13773-1", "A chemoattractant receptor controls development in Dictyostelium discoideum.", "Science (New York, N.Y.)", "1988-09-16", "Klein P S, Sun T J, Saxe C L, Kimmel A R, Johnson R L, Devreotes P N", "protein_xref_pubmed", "3047871", "protein_xref_uniprotkb", "P13773" ], [ "P13773-1", "Phosphorylation of chemoattractant receptors is not essential for chemotaxis or termination of G-protein-mediated responses.", "The Journal of biological chemistry", "1997-10-24", "Kim J Y, Soede R D, Schaap P, Valkema R, Borleis J A, Van Haastert P J, Devreotes P N, Hereld D", "protein_xref_pubmed", "9341180", "protein_xref_uniprotkb", "P13773" ], [ "P13773-1", "Extracellular cAMP can restore development in Dictyostelium cells lacking one, but not two subtypes of early cAMP receptors (cARs). Evidence for involvement of cAR1 in aggregative gene expression.", "Development (Cambridge, England)", "1994-07", "Soede R D, Insall R H, Devreotes P N, Schaap P", "protein_xref_pubmed", "7925004", "protein_xref_uniprotkb", "P13773" ], [ "P13773-1", "The phosphorylated C-terminus of cAR1 plays a role in cell-type-specific gene expression and STATa tyrosine phosphorylation.", "Developmental biology", "2001-05-01", "Briscoe C, Moniakis J, Kim J Y, Brown J M, Hereld D, Devreotes P N, Firtel R A", "protein_xref_pubmed", "11319871", "protein_xref_uniprotkb", "P13773" ], [ "P13773-1", "Gene targeting of the aggregation stage cAMP receptor cAR1 in Dictyostelium.", "Genes & development", "1991-04", "Sun T J, Devreotes P N", "protein_xref_pubmed", "1849108", "protein_xref_uniprotkb", "P13773" ], [ "P13773-1", "cAMP receptor affinity controls wave dynamics, geometry and morphogenesis in Dictyostelium.", "Journal of cell science", "2001-07", "Dormann D, Kim J Y, Devreotes P N, Weijer C J", "protein_xref_pubmed", "11559759", "protein_xref_uniprotkb", "P13773" ], [ "P13773-1", "Surface cAMP receptors mediate multiple responses during development in Dictyostelium: evidenced by antisense mutagenesis.", "The Journal of cell biology", "1990-05", "Sun T J, Van Haastert P J, Devreotes P N", "protein_xref_pubmed", "1692327", "protein_xref_uniprotkb", "P13773" ], [ "P02599-1", "Isolation and properties of calmodulin from Dictyostelium discoideum.", "Journal of bacteriology", "1980-01", "Clarke M, Bazari W L, Kayman S C", "protein_xref_pubmed", "6243626", "protein_xref_uniprotkb", "P02599" ], [ "P02599-1", "Structural and functional properties of calmodulin from the eukaryotic microorganism Dictyostelium discoideum.", "Biochemistry", "1984-06-19", "Marshak D R, Clarke M, Roberts D M, Watterson D M", "protein_xref_pubmed", "6087882", "protein_xref_uniprotkb", "P02599" ], [ "P02599-1", "Inducible expression of calmodulin antisense RNA in Dictyostelium cells inhibits the completion of cytokinesis.", "Molecular biology of the cell", "1992-12", "Liu T, Williams J G, Clarke M", "protein_xref_pubmed", "1493336", "protein_xref_uniprotkb", "P02599" ], [ "Q558Y7-1", "Costars, a Dictyostelium protein similar to the C-terminal domain of STARS, regulates the actin cytoskeleton and motility.", "Journal of cell science", "2010-11-01", "Pang Te-Ling, Chen Fung-Chi, Weng Yi-Lan, Liao Hsien-Ching, Yi Yung-Hsiang, Ho Chia-Lin, Lin Chi-Hung, Chen Mei-Yu", "protein_xref_pubmed", "20940261", "protein_xref_uniprotkb", "Q558Y7" ], [ "Q9TW28-1", "The tail domain of myosin M catalyses nucleotide exchange on Rac1 GTPases and can induce actin-driven surface protrusions.", "Traffic (Copenhagen, Denmark)", "2000-05", "Geissler H, Ullmann R, Soldati T", "protein_xref_pubmed", "11208126", "protein_xref_uniprotkb", "Q9TW28" ], [ "Q966U0-1", "Endonuclease IV homolog from Dictyostelium discoideum: sequencing and functional expression in AP endonuclease-deficient Escherichia coli.", "Mutation research", "2001-06-05", "Tsuji A, Kodaira K, Inoue M, Yasukawa H", "protein_xref_pubmed", "11356336", "protein_xref_uniprotkb", "Q966U0" ], [ "Q1ZXH8-1", "GxcDD, a putative RacGEF, is involved in Dictyostelium development.", "BMC cell biology", "2007-06-20", "Mondal Subhanjan, Neelamegan Dhamodharan, Rivero Francisco, Noegel Angelika A", "protein_xref_pubmed", "17584488", "protein_xref_uniprotkb", "Q1ZXH8" ], [ "Q556N5-1", "A Phg2-Adrm1 pathway participates in the nutrient-controlled developmental response in Dictyostelium.", "Molecular biology of the cell", "2006-12", "Cherix Nathalie, Froquet Romain, Charette Steve J, Blanc C\u00e9dric, Letourneur Fran\u00e7ois, Cosson Pierre", "protein_xref_pubmed", "16987957", "protein_xref_uniprotkb", "Q556N5" ], [ "Q54EH1-1", "The ENTH and C-terminal domains of Dictyostelium epsin cooperate to regulate the dynamic interaction with clathrin-coated pits.", "Journal of cell science", "2008-10-15", "Brady Rebecca J, Wen Yujia, O'Halloran Theresa J", "protein_xref_pubmed", "18827012", "protein_xref_uniprotkb", "Q54EH1" ], [ "O96042-1", "Involvements of a novel protein, DIA2, in cAMP signaling and spore differentiation during Dictyostelium development.", "Differentiation; research in biological diversity", "2008-03", "Hirata Kaori, Amagai Aiko, Chae Soo-Cheon, Hirose Shigenori, Maeda Yasuo", "protein_xref_pubmed", "17825085", "protein_xref_uniprotkb", "O96042" ], [ "O96042-1", "Underexpression of a novel gene, dia2, impairs the transition of Dictyostelium cells from growth to differentiation.", "Biochemical and biophysical research communications", "1998-11-09", "Chae S C, Inazu Y, Amagai A, Maeda Y", "protein_xref_pubmed", "9813183", "protein_xref_uniprotkb", "O96042" ], [ "O97470-1", "The mitochondrial adenine nucleotide translocator from Dictyostelium discoideum. Functional characterization and DNA sequencing.", "European journal of biochemistry", "1999-02", "Bof M, Brandolin G, Satre M, Klein G", "protein_xref_pubmed", "10092866", "protein_xref_uniprotkb", "O97470" ], [ "Q7Z2B8-1", "Identification and characterization of an 8-kDa light chain associated with Dictyostelium discoideum MyoB, a class I myosin.", "The Journal of biological chemistry", "2006-03-10", "Crawley Scott W, de la Roche Marc A, Lee Sheu-Fen, Li Zhihao, Chitayat Seth, Smith Steven P, C\u00f4t\u00e9 Graham P", "protein_xref_pubmed", "16415352", "protein_xref_uniprotkb", "Q7Z2B8" ], [ "Q7Z2B8-1", "The Dictyostelium class I myosin, MyoD, contains a novel light chain that lacks high-affinity calcium-binding sites.", "The Biochemical journal", "2003-09-15", "De La Roche Marc A, Lee Sheu-Fen, C\u00f4t\u00e9 Graham P", "protein_xref_pubmed", "12826013", "protein_xref_uniprotkb", "Q7Z2B8" ], [ "Q55GJ6-1", "Proteasomes from Dictyostelium discoideum: characterization of structure and function.", "Journal of structural biology", "1993", "Schauer T M, Nesper M, Kehl M, Lottspeich F, M\u00fcller-Taubenberger A, Gerisch G, Baumeister W", "protein_xref_pubmed", "8130037", "protein_xref_uniprotkb", "Q55GJ6" ], [ "Q70GP4-1", "Dd-STATb, a Dictyostelium STAT protein with a highly aberrant SH2 domain, functions as a regulator of gene expression during growth and early development.", "Development (Cambridge, England)", "2004-01", "Zhukovskaya Natasha V, Fukuzawa Masashi, Tsujioka Masatsune, Jermyn Keith A, Kawata Takefumi, Abe Tomoaki, Zvelebil Marketa, Williams Jeffrey G", "protein_xref_pubmed", "14701681", "protein_xref_uniprotkb", "Q70GP4" ], [ "Q54FX2-1", "A retinoblastoma orthologue is required for the sensing of a chalone in Dictyostelium discoideum.", "Eukaryotic cell", "2014-03", "Bakthavatsalam Deenadayalan, White Michael J V, Herlihy Sarah E, Phillips Jonathan E, Gomer Richard H", "protein_xref_pubmed", "24390142", "protein_xref_uniprotkb", "Q54FX2" ], [ "Q54FX2-1", "BTG interacts with retinoblastoma to control cell fate in Dictyostelium.", "PloS one", "2010-03-12", "Conte Daniele, MacWilliams Harry K, Ceccarelli Adriano", "protein_xref_pubmed", "20300194", "protein_xref_uniprotkb", "Q54FX2" ], [ "Q54FX2-1", "A retinoblastoma ortholog controls stalk/spore preference in Dictyostelium.", "Development (Cambridge, England)", "2006-04", "MacWilliams Harry, Doquang Kimchi, Pedrola Roberto, Dollman Gytha, Grassi Daniela, Peis Thomas, Tsang Adrian, Ceccarelli Adriano", "protein_xref_pubmed", "16495312", "protein_xref_uniprotkb", "Q54FX2" ], [ "Q54FX2-1", "A retinoblastoma orthologue is a major regulator of S-phase, mitotic, and developmental gene expression in Dictyostelium.", "PloS one", "2012", "Strasser Kimchi, Bloomfield Gareth, MacWilliams Asa, Ceccarelli Adriano, MacWilliams Harry, Tsang Adrian", "protein_xref_pubmed", "22768168", "protein_xref_uniprotkb", "Q54FX2" ], [ "Q54JW0-1", "Ndufaf5 deficiency in the Dictyostelium model: new roles in autophagy and development.", "Molecular biology of the cell", "2013-05", "Carilla-Latorre Sergio, Annesley Sarah J, Mu\u00f1oz-Braceras Sandra, Fisher Paul R, Escalante Ricardo", "protein_xref_pubmed", "23536703", "protein_xref_uniprotkb", "Q54JW0" ] ] }, "readme": "Name\n - Dicty Protein Citations (UniProtKB)\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - 2024-01-09T04:26:09\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Dicty Protein Citations dataset contains publication information for dicty [taxid:44689] UniProtKB accessions that includes PMID, journal name, date and author and title. Publications of large scale studies, and high frequency publications pertaining to genome sequencing, cDNA, chromosomes have been filtered out as per https://data.glygen.org/ln2data/releases/data/v-1.12.3/compiled/dicty_protein_blacklisted_pmids_uniprotkb.csv. The dataset is derived from 2019-09 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - publications\n - PMID\n - journal\n - citations\n - authors\n - UniProtKB\n - PubMed\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the UniProtKB accession and maps it to the UniProtKB canonical accessions. The script also filters out publications of large scale studies, and high frequency publications pertaining to DNA sequencing, cDNA, chromosomes using blacklisted PMIDs\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: dicty_protein_function_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_function_uniprotkb.csv\n Name: dicty_protein_ptm_annotation_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_ptm_annotation_uniprotkb.csv\n Name: dicty_protein_site_annotation_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_site_annotation_uniprotkb.csv\n Name: uniprot-proteome-dictyostelium-discoideum.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_19/uniprot-proteome-dictyostelium-discoideum.nt\n Output Subdomain\n Name: dicty_protein_citations_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_citations_uniprotkb.csv\n Name: dicty_protein_citations_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/dicty_protein_citations_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"647\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"1119\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"203\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"459\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"1084\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1119\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"647\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/dicty_protein_citations_uniprotkb.csv" }