{
"bcoid": "GLY_000817",
"title": "Glycan Sequences GlycoCTXML",
"description": "The dataset provides the glycan sequences in GlycoCT{XML} format for the associated glycans (GlyTouCan ...",
"filename": "glycan_sequences_glycoctxml.csv",
"filetype": "csv",
"categories": {
"molecule": [
"Glycan"
],
"tag": [
"GlycoCTXML sequence format"
],
"status": [
"Reviewed"
],
"file_type": [
"csv"
],
"scope": [
"internal"
],
"species": [
"Rattus",
"Homo sapiens",
"Mus musculus",
"Drosophila melanogaster",
"Rattus norvegicus",
"Severe acute respiratory syndrome coronavirus 2",
"Severe acute respiratory syndrome-related coronavirus",
"Hepatitis C virus (isolate H)",
"Hepacivirus C",
"Sus scrofa",
"Saccharomyces cerevisiae",
"Sus scrofa domesticus",
"Dictyostelium discoideum"
]
},
"minitable": {
"content": [
[
"G00002CF...",
" "
],
[
"G00009BX",
" "
],
[
"G00012MO",
" "
],
[
"G00013MO",
" "
],
[
"G00014MO",
" "
],
[
"G00015MO",
" "
],
[
"G00016MO",
" "
],
[
"G00017IP",
" "
],
[
"G00017MO",
" "
],
[
"G00018MO",
" "
],
[
"G00024MO",
" "
],
[
"G00025AJ",
" "
],
[
"G00025HU",
" "
],
[
"G00025MO",
" "
],
[
"G00026MO",
" "
],
[
"G00027JG",
" "
],
[
"G00027MO",
" "
],
[
"G00028MO",
" "
],
[
"G00029MO",
" "
],
[
"G00030HB",
" "
],
[
"G00030MO",
" "
],
[
"G00030SF",
" "
],
[
"G00031MO",
" "
],
[
"G00032MO",
" "
],
[
"G00033MO",
" "
],
[
"G00034MO",
" "
],
[
"G00034UM",
" "
],
[
"G00034WH",
" "
],
[
"G00034WX",
" "
],
[
"G00035MO",
" "
],
[
"G00036MO",
" "
],
[
"G00037MO",
" "
],
[
"G00038JC",
" "
],
[
"G00038MO",
" "
],
[
"G00039MO",
" "
],
[
"G00040MO",
" "
],
[
"G00041IL",
" "
],
[
"G00041MO",
" "
],
[
"G00042MO",
" "
],
[
"G00043MO",
" "
],
[
"G00044MO",
" "
],
[
"G00045MO",
" "
],
[
"G00046MO",
" "
],
[
"G00047MO",
" "
],
[
"G00048MO",
" "
],
[
"G00049MO",
" "
],
[
"G00050MO",
" "
],
[
"G00051MO",
" "
],
[
"G00052MO",
" "
],
[
"G00053MO",
" "
],
[
"G00054MO",
" "
],
[
"G00055MO",
" "
],
[
"G00056HH",
" "
],
[
"G00056MO",
" "
],
[
"G00057LF",
" "
],
[
"G00057MO",
" "
],
[
"G00058MO",
" "
],
[
"G00058XR",
" "
],
[
"G00059MO",
" "
],
[
"G00060BT",
" "
],
[
"G00060MO",
" "
],
[
"G00061MO",
" "
],
[
"G00062MO",
" "
],
[
"G00063MO",
" "
],
[
"G00064MO",
" "
],
[
"G00065MO",
" "
],
[
"G00066MO",
" "
],
[
"G00066WY",
" "
],
[
"G00067MO",
" "
],
[
"G00068MO",
" "
],
[
"G00069MO",
" "
],
[
"G00069YC",
" "
],
[
"G00070MO",
" "
],
[
"G00071MO",
" "
],
[
"G00072MO",
" "
],
[
"G00073FK",
" "
],
[
"G00073MO",
" "
],
[
"G00076PK",
" "
],
[
"G00079IK",
" "
],
[
"G00082CQ",
" "
],
[
"G00087BY",
" "
],
[
"G00089VH",
" "
],
[
"G00091RT",
" "
],
[
"G00091UN",
" "
]
]
},
"readme": "Name\n - Glycan Sequences GlycoCTXML\n\nVersion\n - v-2.4.1\n\nCreated on\n - \n\nModified on\n - 2023-09-28T20:08:27\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides the glycan sequences in GlycoCT{XML} format for the associated glycans (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLY_000281). Sequences were generated by Nathan Edwards. Source database: https://glytoucan.org/\n\nDescription Domain\n\n Pipeline Steps\n - Step-1: The input files were downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the glycan master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_masterlist.csv\n Name: names.tsv\n URI: https:/data.glygen.org/ln2downloads/glytoucan/gtc_02_20_2024/export/names.tsv\n Name: subsumption.tsv\n URI: https:/data.glygen.org/ln2downloads/glytoucan/gtc_02_20_2024/export/subsumption.tsv\n Output Subdomain\n Name: glycan_sequences_glycoctxml.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_sequences_glycoctxml.csv\n Name: glycan_sequences_glycoctxml.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_sequences_glycoctxml.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"43551\"\n Name: \"sequence_glycoctxml\"\n Description: \"\"\n Unique Values: \"43537\"",
"downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/glycan_sequences_glycoctxml.csv"
}