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expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P25644", "G49108TO" ], [ "P25648-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P25648", "G49108TO" ], [ "P25846-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P25846", "G49108TO" ], [ "P27514-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P27514", "G49108TO" ], [ "P27515-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P27515", "G49108TO" ], [ "P27692-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P27692", "G49108TO" ], [ "P27705-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P27705", "G49108TO" ], [ "P28241-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P28241", "G49108TO" ], [ "P28743-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P28743", "G49108TO" ], [ "P28817-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P28817", "G49108TO" ], [ "P28834-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P28834", "G49108TO" ], [ "P29295-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P29295", "G49108TO" ], [ "P30665-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P30665", "G49108TO" ], [ "P31115-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P31115", "G49108TO" ], [ "P31374-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P31374", "G49108TO" ], [ "P31539-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P31539", "G49108TO" ], [ "P32047-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P32047", "G49108TO" ], [ "P32190-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P32190", "G49108TO" ], [ "P32259-1", "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "The Journal of general and applied microbiology", "2021-04-16", "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "protein_xref_pubmed", "33229814", "protein_xref_oglcnac_atlas", "P32259", "G49108TO" ] ] }, "readme": "Name\n - Yeast O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2023-02-27T21:08:01.227Z\n\nModified on\n - 2023-09-11T20:38:57\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Jungfeng Ma [junfeng.ma@georgetown.edu ]\n\nChecksum\n - \n\nUsability Domain\n - The Yeast O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas) dataset contains details of the publication present in the dataset Yeast O-GlcNAc Glycosylation Sites (O-GlcNAc Atlas) https://data.glygen.org/GLY_000711, contributed by Jungfeng Ma's group.\n\nDescription Domain\n Keywords\n - O-GlcNAc\n - Publications\n - Citations\n - PubMed\n\n Pipeline Steps\n - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: yeast_proteoform_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/yeast_proteoform_glycosylation_sites_oglcnac_atlas.csv\n Output Subdomain\n Name: yeast_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/yeast_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n Name: yeast_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/yeast_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"462\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"1\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"1\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"462\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/yeast_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv" }