{ "bcoid": "GLY_000791", "title": "Yeast UniProtKB Xref PANTHER", "description": "The Yeast UniProtKB Xref PANTHER contains yeast [taxid:559292] UniProtKB canonical accessions cross-referenced ...", "filename": "yeast_protein_xref_panther.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "Panther cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30619-1...", "protein_xref..." ], [ "P30619-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30619-1", "protein_xref_panther", "PTHR11679", "VESICLE PROTEIN SORTING-ASSOCIATED" ], [ "P30619-1", "protein_xref_panther", "PTHR11679:SF30", "PROTEIN ROP" ], [ "P39970-1", "protein_xref_panther", "PTHR19304:SF40", "ATF/CREB ACTIVATOR 1-RELATED" ], [ "P39970-1", "protein_xref_panther", "PTHR19304", "CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN" ], [ "P39976-1", "protein_xref_panther", "PTHR43716", "D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL" ], [ "P39976-1", "protein_xref_panther", "PTHR43716:SF1", "D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL" ], [ "P39979-1", "protein_xref_panther", "PTHR10545:SF29", "DIAMINE ACETYLTRANSFERASE 1" ], [ "P39979-1", "protein_xref_panther", "PTHR10545", "DIAMINE N-ACETYLTRANSFERASE" ], [ "Q07959-1", "protein_xref_panther", "PTHR20855", "ADIPOR/PROGESTIN RECEPTOR-RELATED" ], [ "Q07959-1", "protein_xref_panther", "PTHR20855:SF97", "ADIPOR-LIKE RECEPTOR IZH3-RELATED" ], [ "P25379-1", "protein_xref_panther", "PTHR48078:SF2", "CATABOLIC L-SERINE/THREONINE DEHYDRATASE" ], [ "P25379-1", "protein_xref_panther", "PTHR48078", "THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED" ], [ "P25378-1", "protein_xref_panther", "PTHR24070", "RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY" ], [ "P25378-1", "protein_xref_panther", "PTHR24070:SF226", "GTP-BINDING PROTEIN RHEB HOMOLOG" ], [ "P17121-1", "protein_xref_panther", "PTHR15228:SF25", "SPERMATHECAL PHYSIOLOGY VARIANT" ], [ "P17121-1", "protein_xref_panther", "PTHR15228", "SPERMATHECAL PHYSIOLOGY VARIANT" ], [ "P25374-1", "protein_xref_panther", "PTHR11601:SF34", "CYSTEINE DESULFURASE, MITOCHONDRIAL" ], [ "P25374-1", "protein_xref_panther", "PTHR11601", "CYSTEINE DESULFURYLASE FAMILY MEMBER" ], [ "P25371-1", "protein_xref_panther", "PTHR48041:SF2", "ATP-DEPENDENT PERMEASE-RELATED" ], [ "P25371-1", "protein_xref_panther", "PTHR48041", "ABC TRANSPORTER G FAMILY MEMBER 28" ], [ "P25370-1", "protein_xref_panther", "PTHR28083", "GOOD FOR FULL DBP5 ACTIVITY PROTEIN 2" ], [ "P25370-1", "protein_xref_panther", "PTHR28083:SF1", "GOOD FOR FULL DBP5 ACTIVITY PROTEIN 2" ], [ "P25373-1", "protein_xref_panther", "PTHR45694", "GLUTAREDOXIN 2" ], [ "P25373-1", "protein_xref_panther", "PTHR45694:SF18", "GLUTAREDOXIN-1-RELATED" ], [ "P25372-1", "protein_xref_panther", "PTHR10438", "THIOREDOXIN" ], [ "P25372-1", "protein_xref_panther", "PTHR10438:SF463", "THIOREDOXIN-1" ], [ "Q03049-1", "protein_xref_panther", "PTHR10366", "NAD DEPENDENT EPIMERASE/DEHYDRATASE" ], [ "Q03049-1", "protein_xref_panther", "PTHR10366:SF564", "3 BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 7" ], [ "Q06567-1", "protein_xref_panther", "PTHR43173:SF19", "AARF DOMAIN-CONTAINING PROTEIN KINASE 1" ], [ "Q06567-1", "protein_xref_panther", "PTHR43173", "ABC1 FAMILY PROTEIN" ], [ "Q06563-1", "protein_xref_panther", "PTHR11266", "PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17" ], [ "Q06563-1", "protein_xref_panther", "PTHR11266:SF17", "PROTEIN MPV17" ], [ "Q00539-1", "protein_xref_panther", "PTHR47640:SF10", "TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED" ], [ "Q00539-1", "protein_xref_panther", "PTHR47640", "TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED" ], [ "Q07748-1", "protein_xref_panther", "PTHR31528", "4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE PHOSPHATE SYNTHASE THI11-RELATED" ], [ "Q07748-1", "protein_xref_panther", "PTHR31528:SF1", "4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE PHOSPHATE SYNTHASE THI11-RELATED" ], [ "Q07963-1", "protein_xref_panther", "PTHR21497", "UBIQUITIN LIGASE E3 ALPHA-RELATED" ], [ "Q07963-1", "protein_xref_panther", "PTHR21497:SF24", "E3 UBIQUITIN-PROTEIN LIGASE UBR1" ], [ "Q00246-1", "protein_xref_panther", "PTHR24072:SF181", "GTP-BINDING PROTEIN RHO4" ], [ "Q00246-1", "protein_xref_panther", "PTHR24072", "RHO FAMILY GTPASE" ], [ "Q00245-1", "protein_xref_panther", "PTHR24072", "RHO FAMILY GTPASE" ], [ "Q00245-1", "protein_xref_panther", "PTHR24072:SF186", "GTP-BINDING PROTEIN RHO3" ], [ "P40422-1", "protein_xref_panther", "PTHR12056", "DNA-DIRECTED RNA POLYMERASES I, II, AND III" ], [ "P40422-1", "protein_xref_panther", "PTHR12056:SF2", "DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4" ], [ "P0CX64-1", "protein_xref_panther", "PTHR42648", "TRANSPOSASE, PUTATIVE-RELATED" ], [ "P0CX64-1", "protein_xref_panther", "PTHR42648:SF11", "TRANSPOSON TY4-P GAG-POL POLYPROTEIN" ], [ "P18494-1", "protein_xref_panther", "PTHR10071", "TRANSCRIPTION FACTOR GATA FAMILY MEMBER" ], [ "P18494-1", "protein_xref_panther", "PTHR10071:SF281", "BOX A-BINDING FACTOR-RELATED" ], [ "P18496-1", "protein_xref_panther", "PTHR28106", "MITOCHONDRIAL ATPASE COMPLEX SUBUNIT ATP10" ], [ "P18496-1", "protein_xref_panther", "PTHR28106:SF1", "MITOCHONDRIAL ATPASE COMPLEX SUBUNIT ATP10" ], [ "Q03441-1", "protein_xref_panther", "PTHR16255", "REQUIRED FOR MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG" ], [ "Q03441-1", "protein_xref_panther", "PTHR16255:SF15", "SPORULATION PROTEIN RMD1" ], [ "Q08748-1", "protein_xref_panther", "PTHR47263", "ADENYLATE CYCLASE ACTIVATION PROTEIN GIT1" ], [ "Q08748-1", "protein_xref_panther", "PTHR47263:SF1", "C2 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_7G02350)" ], [ "Q08749-1", "protein_xref_panther", "PTHR13337", "SUCCINATE DEHYDROGENASE" ], [ "Q08749-1", "protein_xref_panther", "PTHR13337:SF2", "SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL SUBUNIT, MITOCHONDRIAL" ], [ "Q08746-1", "protein_xref_panther", "PTHR17602", "RIBOSOME BIOGENESIS REGULATORY PROTEIN" ], [ "Q08746-1", "protein_xref_panther", "PTHR17602:SF4", "RIBOSOME BIOGENESIS REGULATORY PROTEIN HOMOLOG" ], [ "Q08747-1", "protein_xref_panther", "PTHR13844:SF53", "LD45195P" ], [ "Q08747-1", "protein_xref_panther", "PTHR13844", "SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D" ], [ "Q08745-1", "protein_xref_panther", "PTHR12146", "40S RIBOSOMAL PROTEIN S10" ], [ "Q08745-1", "protein_xref_panther", "PTHR12146:SF0", "S10_PLECTIN DOMAIN-CONTAINING PROTEIN" ], [ "Q08742-1", "protein_xref_panther", "PTHR44086", "THIOSULFATE SULFURTRANSFERASE RDL2, MITOCHONDRIAL-RELATED" ], [ "Q08742-1", "protein_xref_panther", "PTHR44086:SF10", "THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 3" ], [ "Q08743-1", "protein_xref_panther", "PTHR11266", "PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17" ], [ "Q08743-1", "protein_xref_panther", "PTHR11266:SF50", "VACUOLAR MEMBRANE PROTEIN YOR292C" ], [ "P32915-1", "protein_xref_panther", "PTHR10906", "SECY/SEC61-ALPHA FAMILY MEMBER" ], [ "P32915-1", "protein_xref_panther", "PTHR10906:SF1", "DSEC61ALPHA" ], [ "P32914-1", "protein_xref_panther", "PTHR12882", "SUPPRESSOR OF TY 4" ], [ "P32914-1", "protein_xref_panther", "PTHR12882:SF1", "TRANSCRIPTION ELONGATION FACTOR SPT4" ], [ "P32916-1", "protein_xref_panther", "PTHR43134", "SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA" ], [ "P32916-1", "protein_xref_panther", "PTHR43134:SF1", "SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA" ], [ "P32911-1", "protein_xref_panther", "PTHR10388:SF4", "EUKARYOTIC TRANSLATION INITIATION FACTOR EIF1" ], [ "P32911-1", "protein_xref_panther", "PTHR10388", "EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1" ], [ "P32910-1", "protein_xref_panther", "PTHR12780", "RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED" ], [ "P32910-1", "protein_xref_panther", "PTHR12780:SF1", "DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC6" ], [ "P32913-1", "protein_xref_panther", "PTHR47433", "VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 17" ], [ "P32913-1", "protein_xref_panther", "PTHR47433:SF1", "VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 17" ], [ "Q04439-1", "protein_xref_panther", "PTHR13140", "MYOSIN" ], [ "Q04439-1", "protein_xref_panther", "PTHR13140:SF837", "MYOSIN-3-RELATED" ], [ "Q04430-1", "protein_xref_panther", "PTHR12280", "PANTOTHENATE KINASE" ], [ "Q04430-1", "protein_xref_panther", "PTHR12280:SF20", "4'-PHOSPHOPANTETHEINE PHOSPHATASE" ], [ "Q04432-1", "protein_xref_panther", "PTHR48094:SF11", "GLUTATHIONE-INDEPENDENT GLYOXALASE HSP31-RELATED" ], [ "Q04432-1", "protein_xref_panther", "PTHR48094", "PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED" ] ] }, "readme": "Name\n - Yeast UniProtKB Xref PANTHER\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2022-08-31T13:34:27.210052\n\nModified on\n - 2023-09-11T20:29:19\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Yeast UniProtKB Xref PANTHER contains yeast [taxid:559292] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products.\n\nDescription Domain\n Keywords\n - protein family\n - PANTHER\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-saccharomyces-cerevisiae.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-saccharomyces-cerevisiae.nt\n Output Subdomain\n Name: yeast_protein_xref_panther.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/yeast_protein_xref_panther.csv\n Name: yeast_protein_xref_panther.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/yeast_protein_xref_panther.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"4751\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"6841\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"5628\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/yeast_protein_xref_panther.csv" }