{ "bcoid": "GLY_000782", "title": "Yeast UniProtKB Xref SGD", "description": "The Yeast UniProtKB Xref The Saccharomyces Genome Database (SGD) contains yeast [taxid:559292] UniProtKB ...", "filename": "yeast_protein_xref_sgd.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "The Saccharomyces Genome Database (SGD) cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30619-1...", "protein_xref..." ], [ "P39972-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30619-1", "protein_xref_sgd", "S000002571", "" ], [ "P39972-1", "protein_xref_sgd", "S000000801", "" ], [ "P39970-1", "protein_xref_sgd", "S000000847", "" ], [ "P39971-1", "protein_xref_sgd", "S000000802", "" ], [ "P39976-1", "protein_xref_sgd", "S000000797", "" ], [ "P39977-1", "protein_xref_sgd", "S000000794", "" ], [ "P39974-1", "protein_xref_sgd", "S000000799", "" ], [ "P39975-1", "protein_xref_sgd", "S000000798", "" ], [ "P39978-1", "protein_xref_sgd", "S000000793", "" ], [ "P39979-1", "protein_xref_sgd", "S000000792", "" ], [ "Q07959-1", "protein_xref_sgd", "S000004013", "" ], [ "P0CX69-1", "protein_xref_sgd", "S000004654", "" ], [ "P25379-1", "protein_xref_sgd", "S000000569", "" ], [ "P25378-1", "protein_xref_sgd", "S000000622", "" ], [ "P17121-1", "protein_xref_sgd", "S000002797", "" ], [ "P25374-1", "protein_xref_sgd", "S000000522", "" ], [ "P17123-1", "protein_xref_sgd", "S000001195", "" ], [ "P17122-1", "protein_xref_sgd", "S000001196", "" ], [ "P25371-1", "protein_xref_sgd", "S000000604", "" ], [ "P25370-1", "protein_xref_sgd", "S000000541", "" ], [ "P25373-1", "protein_xref_sgd", "S000000540", "" ], [ "P25372-1", "protein_xref_sgd", "S000000679", "" ], [ "Q06568-1", "protein_xref_sgd", "S000004244", "" ], [ "Q03049-1", "protein_xref_sgd", "S000002949", "" ], [ "Q06567-1", "protein_xref_sgd", "S000004243", "" ], [ "Q06563-1", "protein_xref_sgd", "S000004241", "" ], [ "Q00539-1", "protein_xref_sgd", "S000001128", "" ], [ "Q07748-1", "protein_xref_sgd", "S000002403", "" ], [ "Q07963-1", "protein_xref_sgd", "S000004014", "" ], [ "Q07746-1", "protein_xref_sgd", "S000002401", "" ], [ "Q07967-1", "protein_xref_sgd", "S000004020", "" ], [ "Q00246-1", "protein_xref_sgd", "S000001763", "" ], [ "Q00245-1", "protein_xref_sgd", "S000001380", "" ], [ "P0CX61-1", "protein_xref_sgd", "S000007404", "" ], [ "P40422-1", "protein_xref_sgd", "S000001185", "" ], [ "P0CX62-1", "protein_xref_sgd", "S000007369", "" ], [ "P0CX64-1", "protein_xref_sgd", "S000007370", "" ], [ "P0CX67-1", "protein_xref_sgd", "S000007367", "" ], [ "P18494-1", "protein_xref_sgd", "S000000842", "" ], [ "P18496-1", "protein_xref_sgd", "S000004385", "" ], [ "Q03441-1", "protein_xref_sgd", "S000002159", "" ], [ "Q08748-1", "protein_xref_sgd", "S000005822", "" ], [ "Q08749-1", "protein_xref_sgd", "S000005823", "" ], [ "Q08746-1", "protein_xref_sgd", "S000005820", "" ], [ "Q08747-1", "protein_xref_sgd", "S000005821", "" ], [ "Q08745-1", "protein_xref_sgd", "S000005819", "" ], [ "Q08742-1", "protein_xref_sgd", "S000005812", "" ], [ "Q08743-1", "protein_xref_sgd", "S000005818", "" ], [ "P32915-1", "protein_xref_sgd", "S000004370", "" ], [ "P32914-1", "protein_xref_sgd", "S000003295", "" ], [ "P32917-1", "protein_xref_sgd", "S000002510", "" ], [ "P32916-1", "protein_xref_sgd", "S000002700", "" ], [ "P32911-1", "protein_xref_sgd", "S000005188", "" ], [ "P32910-1", "protein_xref_sgd", "S000005286", "" ], [ "P32913-1", "protein_xref_sgd", "S000005658", "" ], [ "P32912-1", "protein_xref_sgd", "S000003180", "" ], [ "Q04438-1", "protein_xref_sgd", "S000004713", "" ], [ "Q04439-1", "protein_xref_sgd", "S000004715", "" ], [ "Q04430-1", "protein_xref_sgd", "S000002939", "" ], [ "Q04431-1", "protein_xref_sgd", "S000002940", "" ], [ "Q04432-1", "protein_xref_sgd", "S000002941", "" ], [ "Q04433-1", "protein_xref_sgd", "S000002942", "" ], [ "Q04436-1", "protein_xref_sgd", "S000004709", "" ], [ "Q04437-1", "protein_xref_sgd", "S000004712", "" ], [ "P00546-1", "protein_xref_sgd", "S000000364", "" ], [ "P04385-1", "protein_xref_sgd", "S000000224", "" ], [ "P04387-1", "protein_xref_sgd", "S000004515", "" ], [ "P04386-1", "protein_xref_sgd", "S000006169", "" ], [ "Q08299-1", "protein_xref_sgd", "S000005518", "" ], [ "Q08562-1", "protein_xref_sgd", "S000005717", "" ], [ "Q08560-1", "protein_xref_sgd", "S000005712", "" ], [ "Q08561-1", "protein_xref_sgd", "S000005715", "" ], [ "P25377-1", "protein_xref_sgd", "S000000702", "" ], [ "P25376-1", "protein_xref_sgd", "S000000530", "" ], [ "P32474-1", "protein_xref_sgd", "S000002926", "" ], [ "P09007-1", "protein_xref_sgd", "S000000611", "" ], [ "P04037-1", "protein_xref_sgd", "S000003155", "" ], [ "P04039-1", "protein_xref_sgd", "S000004387", "" ], [ "Q05955-1", "protein_xref_sgd", "S000004217", "" ], [ "P00724-1", "protein_xref_sgd", "S000001424", "" ], [ "P00729-1", "protein_xref_sgd", "S000004912", "" ], [ "Q03048-1", "protein_xref_sgd", "S000003973", "" ], [ "P50896-1", "protein_xref_sgd", "S000002913", "" ], [ "P32786-1", "protein_xref_sgd", "S000000110", "" ] ] }, "readme": "Name\n - Yeast UniProtKB Xref SGD\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2022-09-01T11:43:42.773513\n\nModified on\n - 2023-09-11T21:04:42\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Yeast UniProtKB Xref The Saccharomyces Genome Database (SGD) contains yeast [taxid:559292] UniProtKB canonical accessions cross-referenced to The Saccharomyces Genome Database (SGD) database accessions/identifiers. If you use this dataset please provide proper attribution to The Saccharomyces Genome Database (SGD) and GlyGen\n - The Saccharomyces Genome Database (SGD) is a database for Drosophila gene and genomes. https://flybase.org/\n\nDescription Domain\n Keywords\n - Drosophila\n - The Saccharomyces Genome Database (SGD)\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to flybase database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-saccharomyces-cerevisiae.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-saccharomyces-cerevisiae.nt\n Output Subdomain\n Name: yeast_protein_xref_sgd.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/yeast_protein_xref_sgd.csv\n Name: yeast_protein_xref_sgd.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/yeast_protein_xref_sgd.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"6059\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"6064\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/yeast_protein_xref_sgd.csv" }