{ "bcoid": "GLY_000781", "title": "Yeast UniProtKB Xref ChEMBL", "description": "The Yeast UniprotKB Xref ChEMBL contains yeast [taxid:559292] UniProtKB canonical accessions cross-referenced ...", "filename": "yeast_protein_xref_chembl.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "Chembl cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P00546-1...", "protein_xref..." ], [ "P25376-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P00546-1", "protein_xref_chembl", "CHEMBL5213", "" ], [ "P25376-1", "protein_xref_chembl", "CHEMBL1741178", "" ], [ "P00729-1", "protein_xref_chembl", "CHEMBL4295562", "" ], [ "P29465-1", "protein_xref_chembl", "CHEMBL5597", "" ], [ "P10591-1", "protein_xref_chembl", "CHEMBL5186", "" ], [ "P32897-1", "protein_xref_chembl", "CHEMBL1741180", "" ], [ "P02829-1", "protein_xref_chembl", "CHEMBL3536", "" ], [ "P11412-1", "protein_xref_chembl", "CHEMBL1075249", "" ], [ "P37298-1", "protein_xref_chembl", "CHEMBL3308955", "" ], [ "P30822-1", "protein_xref_chembl", "CHEMBL4630873", "" ], [ "P32352-1", "protein_xref_chembl", "CHEMBL3224", "" ], [ "P06787-1", "protein_xref_chembl", "CHEMBL1667687", "" ], [ "P06786-1", "protein_xref_chembl", "CHEMBL5290", "" ], [ "Q03330-1", "protein_xref_chembl", "CHEMBL4669", "" ], [ "P47154-1", "protein_xref_chembl", "CHEMBL1741185", "" ], [ "Q01662-1", "protein_xref_chembl", "CHEMBL2526", "" ], [ "P22007-1", "protein_xref_chembl", "CHEMBL2111393", "" ], [ "P15108-1", "protein_xref_chembl", "CHEMBL4199", "" ], [ "P32523-1", "protein_xref_chembl", "CHEMBL5058", "" ], [ "P50107-1", "protein_xref_chembl", "CHEMBL6057", "" ], [ "P05453-1", "protein_xref_chembl", "CHEMBL3308902", "" ], [ "P06242-1", "protein_xref_chembl", "CHEMBL5370", "" ], [ "P00163-1", "protein_xref_chembl", "CHEMBL4296317", "" ], [ "P38889-1", "protein_xref_chembl", "CHEMBL2146314", "" ], [ "P38604-1", "protein_xref_chembl", "CHEMBL5355", "" ], [ "P87108-1", "protein_xref_chembl", "CHEMBL1741194", "" ], [ "P32485-1", "protein_xref_chembl", "CHEMBL4296003", "" ], [ "Q08649-1", "protein_xref_chembl", "CHEMBL3832954", "" ], [ "P29704-1", "protein_xref_chembl", "CHEMBL3271930", "" ], [ "P03962-1", "protein_xref_chembl", "CHEMBL4858", "" ], [ "P17442-1", "protein_xref_chembl", "CHEMBL1250353", "" ], [ "Q07953-1", "protein_xref_chembl", "CHEMBL1741198", "" ], [ "P06700-1", "protein_xref_chembl", "CHEMBL3275", "" ], [ "P53615-1", "protein_xref_chembl", "CHEMBL5931", "" ], [ "P22141-1", "protein_xref_chembl", "CHEMBL4206", "" ], [ "P29029-1", "protein_xref_chembl", "CHEMBL1293195", "" ], [ "P04786-1", "protein_xref_chembl", "CHEMBL5948", "" ], [ "P48016-1", "protein_xref_chembl", "CHEMBL2366477", "" ], [ "Q12051-1", "protein_xref_chembl", "CHEMBL1075251", "" ], [ "P46943-1", "protein_xref_chembl", "CHEMBL1250406", "" ], [ "P53323-1", "protein_xref_chembl", "CHEMBL4515", "" ], [ "P23291-1", "protein_xref_chembl", "CHEMBL3497", "" ], [ "P29703-1", "protein_xref_chembl", "CHEMBL2406", "" ], [ "P25043-1", "protein_xref_chembl", "CHEMBL4295577", "" ], [ "P25044-1", "protein_xref_chembl", "CHEMBL4452", "" ], [ "P32476-1", "protein_xref_chembl", "CHEMBL1888", "" ], [ "P41921-1", "protein_xref_chembl", "CHEMBL4119", "" ], [ "P17157-1", "protein_xref_chembl", "CHEMBL5589", "" ], [ "P08004-1", "protein_xref_chembl", "CHEMBL3827", "" ], [ "P36107-1", "protein_xref_chembl", "CHEMBL1641344", "" ], [ "P38624-1", "protein_xref_chembl", "CHEMBL4295578", "" ], [ "P41948-1", "protein_xref_chembl", "CHEMBL1741183", "" ], [ "P43568-1", "protein_xref_chembl", "CHEMBL5003", "" ], [ "P14743-1", "protein_xref_chembl", "CHEMBL5484", "" ], [ "P39073-1", "protein_xref_chembl", "CHEMBL5395", "" ], [ "P40495-1", "protein_xref_chembl", "CHEMBL1075252", "" ], [ "P0CX82-1", "protein_xref_chembl", "CHEMBL1741172", "" ], [ "P12709-1", "protein_xref_chembl", "CHEMBL1075250", "" ], [ "P38260-1", "protein_xref_chembl", "CHEMBL6102", "" ], [ "P07807-1", "protein_xref_chembl", "CHEMBL2576", "" ], [ "P32657-1", "protein_xref_chembl", "CHEMBL4662924", "" ], [ "P07342-1", "protein_xref_chembl", "CHEMBL1075095", "" ], [ "P53051-1", "protein_xref_chembl", "CHEMBL5848", "" ], [ "Q07794-1", "protein_xref_chembl", "CHEMBL3414417", "" ], [ "P20052-1", "protein_xref_chembl", "CHEMBL2111355", "" ], [ "P20052-1", "protein_xref_chembl", "CHEMBL2111410", "" ], [ "P40963-1", "protein_xref_chembl", "CHEMBL3832953", "" ], [ "P38169-1", "protein_xref_chembl", "CHEMBL3627588", "" ], [ "P16140-1", "protein_xref_chembl", "CHEMBL6106", "" ], [ "Q03530-1", "protein_xref_chembl", "CHEMBL1250413", "" ], [ "P00830-1", "protein_xref_chembl", "CHEMBL1075103", "" ], [ "P14904-1", "protein_xref_chembl", "CHEMBL1741175", "" ], [ "P53341-1", "protein_xref_chembl", "CHEMBL2932", "" ], [ "P32842-1", "protein_xref_chembl", "CHEMBL1795084", "" ], [ "P07267-1", "protein_xref_chembl", "CHEMBL4451", "" ], [ "P08679-1", "protein_xref_chembl", "CHEMBL1741170", "" ], [ "P29952-1", "protein_xref_chembl", "CHEMBL3308954", "" ], [ "P19145-1", "protein_xref_chembl", "CHEMBL3308953", "" ], [ "P53686-1", "protein_xref_chembl", "CHEMBL5933", "" ], [ "P26637-1", "protein_xref_chembl", "CHEMBL1075253", "" ], [ "P30656-1", "protein_xref_chembl", "CHEMBL4659", "" ], [ "P28272-1", "protein_xref_chembl", "CHEMBL5621", "" ], [ "P40347-1", "protein_xref_chembl", "CHEMBL5397", "" ], [ "P33302-1", "protein_xref_chembl", "CHEMBL1697658", "" ] ] }, "readme": "Name\n - Yeast UniProtKB Xref ChEMBL\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2022-08-31T13:04:19.896737\n\nModified on\n - 2023-09-11T20:20:57\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Yeast UniprotKB Xref ChEMBL contains yeast [taxid:559292] UniProtKB canonical accessions cross-referenced to ChEMBL database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - ChEMBL or ChEMBLdb is a manually curated chemical database of bioactive molecules with drug-like properties.\n\nDescription Domain\n Keywords\n - bioactivity\n - ChEMBL\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to ChEMBL database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-saccharomyces-cerevisiae.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-saccharomyces-cerevisiae.nt\n Output Subdomain\n Name: yeast_protein_xref_chembl.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/yeast_protein_xref_chembl.csv\n Name: yeast_protein_xref_chembl.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/yeast_protein_xref_chembl.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"88\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"89\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/yeast_protein_xref_chembl.csv" }