{ "bcoid": "GLY_000759", "title": "Yeast Protein Information (UniProtKB)", "description": "The Yeast Protein Information dataset contains yeast [taxid:559292] UniProtKB canonical accessions with ...", "filename": "yeast_protein_info_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "Protein Information" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P21651-1...", "RE107_YEAST..." ], [ "P40107-1...", "GMT1_YEAST..." ] ], "headers": [ "uniprotkb_ca...", "uniprotkb_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "uniprotkb_id" }, { "type": "string", "label": "uniprotkb_protein_mass" }, { "type": "string", "label": "uniprotkb_protein_length" } ], [ "P21651-1", "RE107_YEAST", "35683", "314" ], [ "P40107-1", "GMT1_YEAST", "37019", "337" ], [ "P38156-1", "MAL31_YEAST", "68263", "614" ], [ "P10507-1", "MPPB_YEAST", "51084", "462" ], [ "P38927-1", "REV7_YEAST", "28760", "245" ], [ "Q3E7X8-1", "YE077_YEAST", "143092", "1277" ], [ "Q12026-1", "YL053_YEAST", "12693", "108" ], [ "Q04174-1", "SMP3_YEAST", "59883", "516" ], [ "P39724-1", "BOL3_YEAST", "13356", "118" ], [ "Q05506-1", "SYRC_YEAST", "69525", "607" ], [ "P18409-1", "MDM10_YEAST", "56237", "493" ], [ "Q06417-1", "TDA5_YEAST", "36677", "326" ], [ "P53924-1", "DMA2_YEAST", "57584", "522" ], [ "Q3E7Z0-1", "YN227_YEAST", "7208", "62" ], [ "P20050-1", "HOP1_YEAST", "68876", "605" ], [ "P53552-1", "THO2_YEAST", "183931", "1597" ], [ "P36150-1", "SUMT_YEAST", "66125", "593" ], [ "P05743-1", "RL26A_YEAST", "14234", "127" ], [ "P0CX19-1", "YH214_YEAST", "20594", "203" ], [ "Q08910-1", "YO387_YEAST", "22140", "206" ], [ "P53082-1", "BOL2_YEAST", "14102", "120" ], [ "P38883-1", "RIX1_YEAST", "86739", "763" ], [ "P38356-1", "BSD2_YEAST", "35764", "321" ], [ "P17260-1", "KRE1_YEAST", "32158", "313" ], [ "P43614-1", "KEG1_YEAST", "23555", "200" ], [ "P53184-1", "PNC1_YEAST", "24993", "216" ], [ "P27344-1", "DPB3_YEAST", "22665", "201" ], [ "P40208-1", "GID8_YEAST", "51729", "455" ], [ "P38272-1", "SHE3_YEAST", "47417", "425" ], [ "Q12167-1", "RRG1_YEAST", "42829", "365" ], [ "P11914-1", "MPPA_YEAST", "53338", "482" ], [ "P33310-1", "MDL1_YEAST", "75950", "695" ], [ "P48362-1", "HGH1_YEAST", "44951", "394" ], [ "P16547-1", "OM45_YEAST", "44580", "393" ], [ "P14180-1", "CHS2_YEAST", "109882", "963" ], [ "P43562-1", "YFE0_YEAST", "60610", "540" ], [ "P53047-1", "RTA1_YEAST", "35486", "317" ], [ "P38719-1", "DBP8_YEAST", "47878", "431" ], [ "P06168-1", "ILV5_YEAST", "44368", "395" ], [ "Q3E794-1", "YB072_YEAST", "6143", "53" ], [ "P32478-1", "HS150_YEAST", "41059", "413" ], [ "Q04867-1", "YM91_YEAST", "35852", "317" ], [ "Q3E814-1", "YL006_YEAST", "6752", "58" ], [ "P47022-1", "YJL8_YEAST", "25598", "219" ], [ "P53756-1", "PDR18_YEAST", "149750", "1333" ], [ "Q12405-1", "LPX1_YEAST", "43727", "387" ], [ "P21524-1", "RIR1_YEAST", "99561", "888" ], [ "O14455-1", "RL36B_YEAST", "11135", "100" ], [ "Q99248-1", "YO019_YEAST", "83366", "730" ], [ "P36122-1", "BCH2_YEAST", "88044", "765" ], [ "P43542-1", "COS4_YEAST", "45312", "379" ], [ "P34245-1", "YKJ7_YEAST", "15443", "136" ], [ "P36159-1", "RNZ_YEAST", "96816", "838" ], [ "P53101-1", "STR3_YEAST", "51828", "465" ], [ "P16965-1", "STF2_YEAST", "9615", "84" ], [ "Q3E829-1", "CENPX_YEAST", "9050", "80" ], [ "P09064-1", "IF2B_YEAST", "31574", "285" ], [ "P38863-1", "SPC97_YEAST", "96825", "823" ], [ "Q3E778-1", "YB96B_YEAST", "3925", "34" ], [ "P40956-1", "GTS1_YEAST", "44407", "396" ], [ "Q12390-1", "GST2_YEAST", "26340", "233" ], [ "Q08909-1", "YO385_YEAST", "34064", "290" ], [ "P40532-1", "APQ12_YEAST", "16508", "138" ], [ "Q12400-1", "TRM10_YEAST", "34520", "293" ], [ "P53109-1", "AIM14_YEAST", "65840", "570" ], [ "P0C5R9-1", "RNK_YEAST", "9361", "85" ], [ "P04817-1", "CAN1_YEAST", "65785", "590" ], [ "P21965-1", "MCK1_YEAST", "43136", "375" ], [ "P38153-1", "AP3M_YEAST", "54837", "483" ], [ "Q03308-1", "VPS16_YEAST", "92741", "798" ], [ "P40054-1", "SERA_YEAST", "51193", "469" ], [ "Q3E821-1", "YB008_YEAST", "9481", "79" ], [ "P0CX35-1", "RS4A_YEAST", "29410", "261" ], [ "P19262-1", "ODO2_YEAST", "50431", "463" ], [ "P40446-1", "YIQ5_YEAST", "12940", "119" ], [ "P53929-1", "YNK8_YEAST", "30748", "270" ], [ "P32874-1", "HFA1_YEAST", "259163", "2273" ], [ "P32472-1", "FKBP2_YEAST", "14487", "135" ], [ "Q06156-1", "CND1_YEAST", "132967", "1176" ], [ "P06197-1", "PIS_YEAST", "24824", "220" ], [ "P53207-1", "SNU71_YEAST", "71383", "620" ], [ "P40545-1", "HIS4_YEAST", "29557", "261" ], [ "Q6Q5P6-1", "YH41A_YEAST", "48214", "413" ], [ "P54074-1", "ASI1_YEAST", "71444", "624" ] ] }, "readme": "Name\n - Yeast Protein Information (UniProtKB)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2022-08-30T16:19:56.970676\n\nModified on\n - 2023-09-11T19:09:13\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Yeast Protein Information dataset contains yeast [taxid:559292] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - UniProtKB entry id\n - UniProtKB mnemonic name\n - protein length\n - protein mass\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts it into a dataset as a csv format\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-saccharomyces-cerevisiae.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-saccharomyces-cerevisiae.nt\n Output Subdomain\n Name: yeast_protein_info_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/yeast_protein_info_uniprotkb.csv\n Name: yeast_protein_info_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/yeast_protein_info_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"6060\"\n Name: \"uniprotkb_id\"\n Description: \"The entry name or mnemonic identifier assigned to the protein accession that consists of up to 11 uppercase alphanumeric characters for UniProtKB/Swiss-Prot entry and up to 16 uppercase alphanumeric characters for UniProtKB/TrEMBL entry with a defined naming convention\"\n Unique Values: \"6060\"\n Name: \"uniprotkb_protein_mass\"\n Description: \"Molecular Mass of the protein in Daltons (Da)\"\n Unique Values: \"5813\"\n Name: \"uniprotkb_protein_length\"\n Description: \"Length of the protein sequence\"\n Unique Values: \"1293\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/yeast_protein_info_uniprotkb.csv" }