{ "bcoid": "GLY_000729", "title": "Mouse UniProtKB xref GlyConnect", "description": "Mouse UniProtKB xref GlyConnect dataset contains mouse(taxid: 10090) UniProtKB canonical accessions mapped ...", "filename": "mouse_protein_xref_glyconnect.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tag": [ "GlyConnect Cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q3UD01-1...", "protein_xref..." ], [ "Q3UD01-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q3UD01-1", "protein_xref_glyconnect", "2586", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "2376", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "295", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11040", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "2641", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "1185", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "978", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "473", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "909", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "910", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "911", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "256", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "370", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11691", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11970", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11910", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11468", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11885", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "412", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "3208", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11932", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "10127", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11681", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "181", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11629", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "3247", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11655", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11557", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11530", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11704", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11597", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11533", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11777", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11918", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11951", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11626", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11820", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11643", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11909", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11842", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11510", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11471", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11519", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11506", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11489", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11830", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11532", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11499", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11553", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11604", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11965", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11865", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11967", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11843", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11793", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11576", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11521", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11696", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11470", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11714", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11847", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11526", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11943", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11950", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11505", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11632", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11813", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11493", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11897", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11817", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11580", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11863", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11649", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "9886", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11746", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11802", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11875", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11936", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11741", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11617", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11720", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "11692", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "10993", "" ], [ "Q3UD01-1", "protein_xref_glyconnect", "1642", "" ] ] }, "readme": "Name\n - Mouse UniProtKB xref GlyConnect\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2023-03-03T03:58:28.936Z\n\nModified on\n - 2023-03-03T03:58:29.019Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - Mouse UniProtKB xref GlyConnect dataset contains mouse(taxid: 10090) UniProtKB canonical accessions mapped to the GlyConnect IDs.\n\nDescription Domain\n Keywords\n - Xref\n - GlyConnect\n\n Pipeline Steps\n - Step-1: The script maps the UniProtKB accesions to the Glyconnect Database IDs\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_proteoform_glycosylation_sites_glyconnect.csv\n Output Subdomain\n Name: mouse_protein_xref_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_protein_xref_glyconnect.csv\n Name: mouse_protein_xref_glyconnect.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_protein_xref_glyconnect.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"734\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"896\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/mouse_protein_xref_glyconnect.csv" }