{ "bcoid": "GLY_000727", "title": "Human Protein Biomarkers Citations (Biomarker Database)", "description": "Human Protein Biomarkers Citations dataset contains details of the publication present in the dataset ...", "filename": "human_protein_citations_biomarkers.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tag": [ "Protein Biomarkers Citations (Biomarker Database)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q96PU8-1...", "Quaking I-5 ..." ], [ "Q9HCE3-1...", "A Regulatory..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "Q96PU8-1", "Quaking I-5 protein inhibits invasion and migration of kidney renal clear cell carcinoma via inhibiting epithelial-mesenchymal transition suppression through the regulation of microRNA 200c.", "Translational andrology and urology", "2021 Oct", "Zhang R, Wang W, Aimudula A, Lu S, Lu P, Aihaiti R, Bao Y", "protein_xref_pubmed", "34804823", "protein_xref_biomarkerdb", "A0374" ], [ "Q9HCE3-1", "A Regulatory T-Cell Gene Signature Is a Specific and Sensitive Biomarker to Identify Children With New-Onset Type 1 Diabetes.", "Diabetes", "2016-04", "Pesenacker Anne M, Wang Adele Y, Singh Amrit, Gillies Jana, Kim Youngwoong, Piccirillo Ciriaco A, Nguyen Duc, Haining W Nicholas, Tebbutt Scott J, Panagiotopoulos Constadina, Levings Megan K", "protein_xref_pubmed", "26786322", "protein_xref_biomarkerdb", "A0450" ], [ "O94875-1", "LncRNA KCNQ1OT1 affects cell proliferation, apoptosis and fibrosis through regulating miR-18b-5p/SORBS2 axis and NF-kB pathway in diabetic nephropathy.", "Diabetology & metabolic syndrome", "2020", "Jie R, Zhu P, Zhong J, Zhang Y, Wu H", "protein_xref_pubmed", "32905431", "protein_xref_biomarkerdb", "A0375" ], [ "P07203-1", "GPX1, a biomarker for the diagnosis and prognosis of kidney cancer, promotes the progression of kidney cancer.", "Aging", "2019 Dec 16", "Cheng Y, Xu T, Li S, Ruan H", "protein_xref_pubmed", "31844035", "protein_xref_biomarkerdb", "A0382" ], [ "Q15020-1", "Significance of elevated SCC-Ag level on tumor recurrence and patient survival in patients with squamous-cell carcinoma of uterine cervix following definitive chemoradiotherapy: a multi-institutional analysis.", "Journal of gynecologic oncology", "2019 Jan", "Choi KH, Lee SW, Yu M, Jeong S, Lee JW, Lee JH", "protein_xref_pubmed", "30479085", "protein_xref_biomarkerdb", "A0037" ], [ "P27487-1", "Predictive significance of serum dipeptidyl peptidase-IV in papillary thyroid carcinoma.", "Cancer biomarkers : section A of Disease markers", "2019", "Zhang N, Cong X, Zhou D, Guo L, Yuan C, Xu D, Su C", "protein_xref_pubmed", "30594915", "protein_xref_biomarkerdb", "A0330" ], [ "P01584-1", "Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China.", "Lancet (London, England)", "2020 Feb 15", "Huang C, Wang Y, Li X, Ren L, Zhao J, Hu Y, Zhang L, Fan G, Xu J, Gu X, Cheng Z, Yu T, Xia J, Wei Y, Wu W, Xie X, Yin W, Li H, Liu M, Xiao Y, Gao H, Guo L, Xie J, Wang G, Jiang R, Gao Z, Jin Q, Wang J, Cao B", "protein_xref_pubmed", "31986264", "protein_xref_biomarkerdb", "A0445" ], [ "P29965-1", "Endotheliopathy in COVID-19-associated coagulopathy: evidence from a single-centre, cross-sectional study.", "The Lancet. Haematology", "2020 Aug", "Goshua G, Pine AB, Meizlish ML, Chang CH, Zhang H, Bahel P, Baluha A, Bar N, Bona RD, Burns AJ, Dela Cruz CS, Dumont A, Halene S, Hwa J, Koff J, Menninger H, Neparidze N, Price C, Siner JM, Tormey C, Rinder HM, Chun HJ, Lee AI", "protein_xref_pubmed", "32619411", "protein_xref_biomarkerdb", "A0119" ], [ "Q96HD1-1", "Identification of tumor-educated platelet biomarkers of non-small-cell lung cancer.", "OncoTargets and therapy", "2018", "Sheng M, Dong Z, Xie Y", "protein_xref_pubmed", "30532555", "protein_xref_biomarkerdb", "A0478" ], [ "P07237-1", "Computational identification and analysis of early diagnostic biomarkers for kidney cancer.", "Journal of human genetics", "2019-10", "Tang Tang, Du Xiaoyan, Zhang Xiaoyi, Niu Wenling, Li Chunhua, Tan Jianjun", "protein_xref_pubmed", "31350524", "protein_xref_biomarkerdb", "A0441" ], [ "O95235-1", "Characterization of KIF20A as a prognostic biomarker and therapeutic target for different subtypes of breast cancer.", "International journal of oncology", "2020 Jul", "Nakamura M, Takano A, Thang PM, Tsevegjav B, Zhu M, Yokose T, Yamashita T, Miyagi Y, Daigo Y", "protein_xref_pubmed", "32467984", "protein_xref_biomarkerdb", "A0230" ], [ "P02768-1", "Clinical characteristics and risk factors associated with COVID-19 disease severity in patients with cancer in Wuhan, China: a multicentre, retrospective, cohort study.", "The Lancet. Oncology", "2020 Jul", "Tian J, Yuan X, Xiao J, Zhong Q, Yang C, Liu B, Cai Y, Lu Z, Wang J, Wang Y, Liu S, Cheng B, Wang J, Zhang M, Wang L, Niu S, Yao Z, Deng X, Zhou F, Wei W, Li Q, Chen X, Chen W, Yang Q, Wu S, Fan J, Shu B, Hu Z, Wang S, Yang XP, Liu W, Miao X, Wang Z", "protein_xref_pubmed", "32479790", "protein_xref_biomarkerdb", "A0052" ], [ "P05231-1", "Cytokine release syndrome in severe COVID-19: interleukin-6 receptor antagonist tocilizumab may be the key to reduce mortality.", "International journal of antimicrobial agents", "2020 May", "Zhang C, Wu Z, Li JW, Zhao H, Wang GQ", "protein_xref_pubmed", "32234467", "protein_xref_biomarkerdb", "A0001" ], [ "P02741-1", "Combined use of the neutrophil-to-lymphocyte ratio and CRP to predict 7-day disease severity in 84 hospitalized patients with COVID-19 pneumonia: a retrospective cohort study.", "Annals of translational medicine", "2020 May", "Liu YP, Li GM, He J, Liu Y, Li M, Zhang R, Li YL, Wu YZ, Diao B", "protein_xref_pubmed", "32566572", "protein_xref_biomarkerdb", "A0009" ], [ "P02768-1", "Postoperative C-reactive protein/albumin ratio is a biomarker of risk of recurrence and need for adjuvant chemotherapy for stage III colorectal cancer.", "International journal of clinical oncology", "2020-07", "Matsuoka Hiroya, Ando Koji, Hu Qingjiang, Zaitsu Yoko, Tsuda Yasuo, Hisamatsu Yuichi, Nakashima Yuichiro, Kimura Yasue, Oki Eiji, Mori Masaki", "protein_xref_pubmed", "32279124", "protein_xref_biomarkerdb", "A0100" ], [ "P36404-1", "Identification of tumor-educated platelet biomarkers of non-small-cell lung cancer.", "OncoTargets and therapy", "2018", "Sheng M, Dong Z, Xie Y", "protein_xref_pubmed", "30532555", "protein_xref_biomarkerdb", "A0478" ], [ "Q8WXI7-1", "A novel multiple biomarker panel for the early detection of high-grade serous ovarian carcinoma.", "Gynecologic oncology", "2018-06", "Han Chanhee, Bellone Stefania, Siegel Eric R, Altwerger Gary, Menderes Gulden, Bonazzoli Elena, Egawa-Takata Tomomi, Pettinella Francesca, Bianchi Anna, Riccio Francesco, Zammataro Luca, Yadav Ghanshyam, Marto Jarrod A, Penet Marie-France, Levine Douglas A, Drapkin Ronny, Patel Abhijit, Litkouhi Babak, Ratner Elena, Silasi Dan-Arin, Huang Gloria S, Azodi Masoud, Schwartz Peter E, Santin Alessandro D", "protein_xref_pubmed", "29572027", "protein_xref_biomarkerdb", "A0456" ], [ "Q6P1J9-1", "Prognostic value of Cardiac Biomarkers in COVID-19 Infection: A Meta-analysis.", "Research square", "2020-06-13", "Dawson Desiree, Dominic Paari, Sheth Aakash, Modi Malak", "protein_xref_pubmed", "32702736", "protein_xref_biomarkerdb", "A0029" ], [ "P06276-1", "Serum cholinesterase activity in diabetes and associated pathologies.", "Diabetes research and clinical practice", "2006-04", "In\u00e1cio Lunkes Gilberto, Stefanello Franciele, Sausen Lunkes Dani\u00e9le, Maria Morsch Vera, Schetinger Maria Rosa Chitolina, Gon\u00e7alves Jamile Fabbrin", "protein_xref_pubmed", "16233931", "protein_xref_biomarkerdb", "A0051" ], [ "Q9C0B1-1", "The N6 -methyladenosine (m6 A) erasers alkylation repair homologue 5 (ALKBH5) and fat mass and obesity-associated protein (FTO) are prognostic biomarkers in patients with clear cell renal carcinoma.", "BJU international", "2020-04", "Strick Alexander, von Hagen Felix, Gundert Larissa, Kl\u00fcmper Niklas, Tolkach Yuri, Schmidt Doris, Kristiansen Glen, Toma Marieta, Ritter Manuel, Ellinger J\u00f6rg", "protein_xref_pubmed", "31985880", "protein_xref_biomarkerdb", "A0437" ], [ "Q07325-1", "Interferon Gamma Messenger RNA Signature in Tumor Biopsies Predicts Outcomes in Patients with Non-Small Cell Lung Carcinoma or Urothelial Cancer Treated with Durvalumab.", "Clinical cancer research : an official journal of the American Association for Cancer Research", "2018 Aug 15", "Higgs BW, Morehouse CA, Streicher K, Brohawn PZ, Pilataxi F, Gupta A, Ranade K", "protein_xref_pubmed", "29716923", "protein_xref_biomarkerdb", "A0446" ], [ "P0DJI8-1", "Analysis clinical features of COVID-19 infection in secondary epidemic area and report potential biomarkers in evaluation", "medRxiv", "2020", "Ji W., Bishnu G., Cai Z., Shen X.", "protein_xref_doi", "10.1101/2020.03.10.20033613", "protein_xref_biomarkerdb", "A0016" ], [ "P01031-1", "A novel multiplex detection array revealed systemic complement activation in oral squamous cell carcinoma.", "Oncotarget", "2018 Jan 9", "Gallenkamp J, Spanier G, Worle E, Englbrecht M, Kirschfink M, Greslechner R, Braun R, Schafer N, Bauer RJ, Pauly D", "protein_xref_pubmed", "29423024", "protein_xref_biomarkerdb", "A0140" ], [ "Q06830-1", "Peroxiredoxin-1 as a prognostic factor in patients with ovarian cancer.", "Annals of agricultural and environmental medicine : AAEM", "2019 Sep 19", "Sienko J, Teliga-Czajkowska J, Przytula E, Czajkowski K, Smolarczyk R, Nowis D", "protein_xref_pubmed", "31559796", "protein_xref_biomarkerdb", "A0296" ], [ "P37058-1", "Identification of tumor-educated platelet biomarkers of non-small-cell lung cancer.", "OncoTargets and therapy", "2018", "Sheng M, Dong Z, Xie Y", "protein_xref_pubmed", "30532555", "protein_xref_biomarkerdb", "A0478" ], [ "P80098-1", "Transfection of colorectal cancer cells with chemokine MCP-3 (monocyte chemotactic protein-3) gene retards tumor growth and inhibits tumor metastasis.", "World journal of gastroenterology", "2002 Dec", "Hu JY, Li GC, Wang WM, Zhu JG, Li YF, Zhou GH, Sun QB", "protein_xref_pubmed", "12439927", "protein_xref_biomarkerdb", "A0018" ], [ "P10145-1", "Circulating IL-8 levels are increased in patients with type 2 diabetes and associated with worse inflammatory and cardiometabolic profile.", "Acta diabetologica", "2017 Oct", "Cimini FA, Barchetta I, Porzia A, Mainiero F, Costantino C, Bertoccini L, Ceccarelli V, Morini S, Baroni MG, Lenzi A, Cavallo MG", "protein_xref_pubmed", "28836077", "protein_xref_biomarkerdb", "A0064" ], [ "P14210-1", "Cytokine biomarkers of COVID-19", "medRxiv", "2020", "Deng H.J., Long Q.X., Liu B.Z., Ren J.H., Liao P., Qiu J.F., Tang X.J., Zhang Y., Tang N., Xu Y.Y., Mo Z., Chen J., Hu J.L., Huang A.L.", "protein_xref_doi", "10.1101/2020.05.31.20118315", "protein_xref_biomarkerdb", "A0078" ], [ "P05231-1", "S100A8/A9 (Calprotectin), Interleukin-6, and C-Reactive Protein in Obesity and Diabetes before and after Roux-en-Y Gastric Bypass Surgery.", "Obesity facts", "2017", "Lylloff L, Bathum L, Madsbad S, Grundtvig JLG, Nordgaard-Lassen I, Fenger M", "protein_xref_pubmed", "28848164", "protein_xref_biomarkerdb", "A0001" ], [ "P01008-1", "Understanding the andromeda strain - The role of cytokine release, coagulopathy and antithrombin III in SARS-CoV2 critical illness.", "Blood reviews", "2021 Jan", "Mir N, D'Amico A, Dasher J, Tolwani A, Valentine V", "protein_xref_pubmed", "32829961", "protein_xref_biomarkerdb", "A0069" ], [ "Q9NPI6-1", "Serum tumor markers for detection of hepatocellular carcinoma.", "World journal of gastroenterology", "2006 Feb 28", "Zhou L, Liu J, Luo F", "protein_xref_pubmed", "16534867", "protein_xref_biomarkerdb", "A0238" ], [ "Q7Z7M9-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_biomarkerdb", "A0493" ], [ "P0DJI8-1", "The role of biomarkers in diagnosis of COVID-19 - A systematic review.", "Life sciences", "2020 Aug 1", "Kermali M, Khalsa RK, Pillai K, Ismail Z, Harky A", "protein_xref_pubmed", "32475810", "protein_xref_biomarkerdb", "A0016" ], [ "P02741-1", "Laboratory Biomarkers Predicting COVID-19 Severity in the Emergency Room.", "Archives of medical research", "2020 Aug", "Assandri R, Buscarini E, Canetta C, Scartabellati A, Vigano G, Montanelli A", "protein_xref_pubmed", "32471703", "protein_xref_biomarkerdb", "A0009" ], [ "P31260-1", "HOXA10 deteriorates gastric cancer through activating JAK1/STAT3 signaling pathway.", "Cancer management and research", "2019", "Chen W, Wu G, Zhu Y, Zhang W, Zhang H, Zhou Y, Sun P", "protein_xref_pubmed", "31406476", "protein_xref_biomarkerdb", "A0365" ], [ "Q16610-1", "ECM1 and TMPRSS4 are diagnostic markers of malignant thyroid neoplasms and improve the accuracy of fine needle aspiration biopsy.", "Annals of surgery", "2005 Sep", "Kebebew E, Peng M, Reiff E, Duh QY, Clark OH, McMillan A", "protein_xref_pubmed", "16135921", "protein_xref_biomarkerdb", "A0469" ], [ "Q8WXI7-1", "SARS-COV-2 Infection Causes Dyslipidemia and Increases Levels of Cancer Biomarkers in COVID-19 Patients", "Preprints with The Lancet", "2020", "Tan W., Wei X., Su J., Lin Y., Wei J., Wan H., Cao X., Wang H.", "protein_xref_doi", "10.2139/ssrn.3552854", "protein_xref_biomarkerdb", "A0035" ], [ "Q12933-1", "TRAF2 is a Valuable Prognostic Biomarker in Patients with Prostate Cancer.", "Medical science monitor : international medical journal of experimental and clinical research", "2017 Aug 31", "Wei B, Liang J, Hu J, Mi Y, Ruan J, Zhang J, Wang Z, Hu Q, Jiang H, Ding Q", "protein_xref_pubmed", "28855498", "protein_xref_biomarkerdb", "A0169" ], [ "Q9NZQ7-1", "Tumor cell PD-L1 expression is a strong predictor of unfavorable prognosis in immune checkpoint therapy-naive clear cell renal cell cancer.", "International urology and nephrology", "2021 Dec", "Moller K, Fraune C, Blessin NC, Lennartz M, Kluth M, Hube-Magg C, Lindhorst L, Dahlem R, Fisch M, Eichenauer T, Riechardt S, Simon R, Sauter G, Buscheck F, Hoppner W, Matthies C, Doh O, Krech T, Marx AH, Zecha H, Rink M, Steurer S, Clauditz TS", "protein_xref_pubmed", "33797012", "protein_xref_biomarkerdb", "A0360" ], [ "Q14508-1", "Elevations of serum cancer biomarkers correlate with severity of COVID-19.", "Journal of medical virology", "2020 Oct", "Wei X, Su J, Yang K, Wei J, Wan H, Cao X, Tan W, Wang H", "protein_xref_pubmed", "32347972", "protein_xref_biomarkerdb", "A0032" ], [ "P23467-1", "PSMD11, PTPRM and PTPRB as novel biomarkers of pancreatic cancer progression.", "Biochimica et biophysica acta. General subjects", "2020 Nov", "Sahni S, Krisp C, Molloy MP, Nahm C, Maloney S, Gillson J, Gill AJ, Samra J, Mittal A", "protein_xref_pubmed", "32663515", "protein_xref_biomarkerdb", "A0199" ], [ "P19320-1", "Vascular cell adhesion molecule-1 (VCAM-1)--an increasing insight into its role in tumorigenicity and metastasis.", "International journal of cancer", "2015 Jun 1", "Schlesinger M, Bendas G", "protein_xref_pubmed", "24771582", "protein_xref_biomarkerdb", "A0143" ], [ "Q13144-1", "Low EIF2B5 expression predicts poor prognosis in ovarian cancer.", "Medicine", "2020 Jan", "Hou L, Jiao Y, Li Y, Luo Z, Zhang X, Pan G, Zhao Y, Yang Z, He M", "protein_xref_pubmed", "32000373", "protein_xref_biomarkerdb", "A0273" ], [ "P0DJI8-1", "Serum amyloid A as a tumor marker in sera of nude mice with orthotopic human pancreatic cancer and in plasma of patients with pancreatic cancer.", "International journal of oncology", "2005 Nov", "Yokoi K, Shih LC, Kobayashi R, Koomen J, Hawke D, Li D, Hamilton SR, Abbruzzese JL, Coombes KR, Fidler IJ", "protein_xref_pubmed", "16211233", "protein_xref_biomarkerdb", "A0016" ], [ "P13942-1", "Urinary Proteomics Associates with COVID-19 Severity: Pilot Proof-of-Principle Data and Design of a Multicentric Diagnostic Study.", "Proteomics", "2020-09-10", "Wendt Ralph, Kalbitz Sven, L\u00fcbbert Christoph, Kellner Nils, Macholz Martin, Schroth Stefanie, Ermisch J\u00f6rg, Latosisnka Agnieszka, Arnold Benjamin, Mischak Harald, Beige Joachim, Metzger Jochen", "protein_xref_pubmed", "32960510", "protein_xref_biomarkerdb", "A0131" ], [ "P36956-1", "SREBP1 as a potential biomarker predicts levothyroxine efficacy of differentiated thyroid cancer.", "Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie", "2020 Mar", "Li C, Peng X, Lv J, Zou H, Liu J, Zhang K, Li Z", "protein_xref_pubmed", "31887541", "protein_xref_biomarkerdb", "A0302" ], [ "P02790-1", "Antibody Panel Based N-Glycan Imaging for N-Glycoprotein Biomarker Discovery.", "Current protocols in protein science", "2019-12", "Black Alyson P, Angel Peggi M, Drake Richard R, Mehta Anand S", "protein_xref_pubmed", "31721442", "protein_xref_biomarkerdb", "A0245" ], [ "P01008-1", "Anti-thrombin as a prognostic biomarker candidate for patients with recurrent glioblastoma multiform under treatment with perillyl alcohol.", "Journal of experimental therapeutics & oncology", "2008", "Fischer Jde S, Carvalho PC, Neves-Ferreira AG, da Fonseca CO, Perales J, Carvalho Mda G, Domont GB", "protein_xref_pubmed", "19227008", "protein_xref_biomarkerdb", "A0069" ], [ "Q16236-1", "NRF2 metagene signature is a novel prognostic biomarker in colorectal cancer.", "Cancer genetics", "2020 Oct", "O'Cathail SM, Wu CH, Lewis A, Holmes C, Hawkins MA, Maughan T", "protein_xref_pubmed", "32871287", "protein_xref_biomarkerdb", "A0206" ], [ "P10145-1", "An inflammatory cytokine signature helps predict COVID-19 severity and death.", "medRxiv : the preprint server for health sciences", "2020 May 30", "Del Valle DM, Kim-Schulze S, Hsin-Hui H, Beckmann ND, Nirenberg S, Wang B, Lavin Y, Swartz T, Madduri D, Stock A, Marron T, Xie H, Patel MK, van Oekelen O, Rahman A, Kovatch P, Aberg J, Schadt E, Jagannath S, Mazumdar M, Charney A, Firpo-Betancourt A, Mendu DR, Jhang J, Reich D, Sigel K, Cordon-Cardo C, Feldmann M, Parekh S, Merad M, Gnjatic S", "protein_xref_pubmed", "32511562", "protein_xref_biomarkerdb", "A0064" ], [ "P02741-1", "C-reactive protein: A promising biomarker for poor prognosis in COVID-19 infection.", "Clinica chimica acta; international journal of clinical chemistry", "2020 Oct", "Sahu BR, Kampa RK, Padhi A, Panda AK", "protein_xref_pubmed", "32511972", "protein_xref_biomarkerdb", "A0009" ], [ "P22301-1", "Serum levels of IL-6, IL-8, and IL-10 are indicators of prognosis in pancreatic cancer.", "The Journal of international medical research", "2018 Dec", "Feng L, Qi Q, Wang P, Chen H, Chen Z, Meng Z, Liu L", "protein_xref_pubmed", "30304975", "protein_xref_biomarkerdb", "A0046" ], [ "P17174-1", "Biomarkers associated with COVID-19 disease progression.", "Critical reviews in clinical laboratory sciences", "2020 Sep", "Ponti G, Maccaferri M, Ruini C, Tomasi A, Ozben T", "protein_xref_pubmed", "32503382", "protein_xref_biomarkerdb", "A0079" ], [ "Q15582-1", "Acetylated K676 TGFBIp as a severity diagnostic blood biomarker for SARS-CoV-2 pneumonia.", "Science advances", "2020 Jul", "Park HH, Kim HN, Kim H, Yoo Y, Shin H, Choi EY, Bae JS, Lee W", "protein_xref_pubmed", "32937590", "protein_xref_biomarkerdb", "A0130" ], [ "Q92558-1", "Identification of tumor-educated platelet biomarkers of non-small-cell lung cancer.", "OncoTargets and therapy", "2018", "Sheng M, Dong Z, Xie Y", "protein_xref_pubmed", "30532555", "protein_xref_biomarkerdb", "A0478" ], [ "P15941-1", "Serum surfactant protein A and D may be novel biomarkers of COVID-19 pneumonia severity", "Preprint at Research Square", "2020", "Saito A., Kuronuma K., Moniwa K., Kodama K., Takahashi S., Takahashi H., Chiba H.", "protein_xref_doi", "10.21203/rs.3.rs-29567/v1", "protein_xref_biomarkerdb", "A0036" ], [ "P02741-1", "C-reactive protein, procalcitonin, D-dimer, and ferritin in severe coronavirus disease-2019: a meta-analysis.", "Therapeutic advances in respiratory disease", "2020", "Huang Ian, Pranata Raymond, Lim Michael Anthonius, Oehadian Amaylia, Alisjahbana Bachti", "protein_xref_pubmed", "32615866", "protein_xref_biomarkerdb", "A0009" ], [ "P12830-1", "Assessment of a fragment of e-cadherin as a serum biomarker with predictive value for prostate cancer.", "British journal of cancer", "2005 Jun 6", "Kuefer R, Hofer MD, Zorn CS, Engel O, Volkmer BG, Juarez-Brito MA, Eggel M, Gschwend JE, Rubin MA, Day ML", "protein_xref_pubmed", "15870707", "protein_xref_biomarkerdb", "A0232" ], [ "P01024-1", "The complement component C3a fragment is a potential biomarker for hepatitis C virus-related hepatocellular carcinoma.", "Journal of gastroenterology", "2010 Apr", "Kanmura S, Uto H, Sato Y, Kumagai K, Sasaki F, Moriuchi A, Oketani M, Ido A, Nagata K, Hayashi K, Stuver SO, Tsubouchi H", "protein_xref_pubmed", "20012107", "protein_xref_biomarkerdb", "A0141" ], [ "P04275-1", "von Willebrand factor is a useful biomarker for liver fibrosis and prediction of hepatocellular carcinoma development in patients with hepatitis B and C.", "United European gastroenterology journal", "2018 Nov", "Takaya H, Kawaratani H, Tsuji Y, Nakanishi K, Saikawa S, Sato S, Sawada Y, Kaji K, Okura Y, Shimozato N, Kitade M, Akahane T, Moriya K, Namisaki T, Mitoro A, Matsumoto M, Fukui H, Yoshiji H", "protein_xref_pubmed", "30386613", "protein_xref_biomarkerdb", "A0117" ], [ "P06276-1", "Combination of Serum Albumin and Cholinesterase Levels as Prognostic Indicator in Patients ith Colorectal Cancer.", "Anticancer research", "2019-02", "Yamamoto Manabu, Saito Hiroaki, Uejima Chihiro, Tanio Akimitsu, Tada Yoichiro, Matsunaga Tomoyuki, Sakamoto Teruhisa, Honjo Soichiro, Ashida Keigo, Fujiwara Yoshiyuki", "protein_xref_pubmed", "30711999", "protein_xref_biomarkerdb", "A0051" ], [ "Q99988-1", "Serum markers in patients with resectable pancreatic adenocarcinoma: macrophage inhibitory cytokine 1 versus CA19-9.", "Clinical cancer research : an official journal of the American Association for Cancer Research", "2006 Jan 15", "Koopmann J, Rosenzweig CN, Zhang Z, Canto MI, Brown DA, Hunter M, Yeo C, Chan DW, Breit SN, Goggins M", "protein_xref_pubmed", "16428484", "protein_xref_biomarkerdb", "A0177" ], [ "P02741-1", "The association between biomarkers and clinical outcomes in novel coronavirus\u00a0pneumonia in a US cohort.", "Biomarkers in medicine", "2020-08", "Ayanian Shant, Reyes Juan, Lynn Lei, Teufel Karolyn", "protein_xref_pubmed", "32677844", "protein_xref_biomarkerdb", "A0009" ], [ "Q15020-1", "SARS-COV-2 Infection Causes Dyslipidemia and Increases Levels of Cancer Biomarkers in COVID-19 Patients", "Preprints with The Lancet", "2020", "Tan W., Wei X., Su J., Lin Y., Wei J., Wan H., Cao X., Wang H.", "protein_xref_doi", "10.2139/ssrn.3552854", "protein_xref_biomarkerdb", "A0037" ], [ "P08727-1", "Elevations of serum cancer biomarkers correlate with severity of COVID-19.", "Journal of medical virology", "2020 Oct", "Wei X, Su J, Yang K, Wei J, Wan H, Cao X, Tan W, Wang H", "protein_xref_pubmed", "32347972", "protein_xref_biomarkerdb", "A0033" ], [ "P15941-1", "The significance of CA15-3 in breast cancer patients and its relationship to HER-2 receptor status.", "International journal of immunopathology and pharmacology", "2014 Jan-Mar", "Hashim ZM", "protein_xref_pubmed", "24674678", "protein_xref_biomarkerdb", "A0036" ], [ "Q6P1J9-1", "Association Between Hypoxemia and Mortality in Patients With COVID-19.", "Mayo Clinic proceedings", "2020-06", "Xie Jiang, Covassin Naima, Fan Zhengyang, Singh Prachi, Gao Wei, Li Guangxi, Kara Tomas, Somers Virend K", "protein_xref_pubmed", "32376101", "protein_xref_biomarkerdb", "A0115" ], [ "P16109-1", "Platelet and Vascular Biomarkers Associate With Thrombosis and Death in Coronavirus Disease.", "Circulation research", "2020 Sep 11", "Barrett TJ, Lee AH, Xia Y, Lin LH, Black M, Cotzia P, Hochman J, Berger JS", "protein_xref_pubmed", "32757722", "protein_xref_biomarkerdb", "A0118" ], [ "P09919-1", "The use of anti-inflammatory drugs in the treatment of people with severe coronavirus disease 2019 (COVID-19): The Perspectives of clinical immunologists from China.", "Clinical immunology (Orlando, Fla.)", "2020 May", "Zhang W, Zhao Y, Zhang F, Wang Q, Li T, Liu Z, Wang J, Qin Y, Zhang X, Yan X, Zeng X, Zhang S", "protein_xref_pubmed", "32222466", "protein_xref_biomarkerdb", "A0043" ], [ "P01584-1", "Interleukin-1B-31 gene polymorphism in Hakka gastric cancer patients in Guangdong, China.", "Genetics and molecular research : GMR", "2014 Aug 7", "Qiu B, Zou HY, Yang YH, Lai CF", "protein_xref_pubmed", "25117345", "protein_xref_biomarkerdb", "A0040" ], [ "Q8NBJ4-1", "Novel fucosylated biomarkers for the early detection of hepatocellular carcinoma.", "Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology", "2009-06", "Wang Mengjun, Long Ronald E, Comunale Mary Ann, Junaidi Omer, Marrero Jorge, Di Bisceglie Adrian M, Block Timothy M, Mehta Anand S", "protein_xref_pubmed", "19454616", "protein_xref_biomarkerdb", "A0470" ], [ "P01009-1", "Panel of serum biomarkers for the diagnosis of lung cancer.", "Journal of clinical oncology : official journal of the American Society of Clinical Oncology", "2007-12-10", "Patz Edward F, Campa Michael J, Gottlin Elizabeth B, Kusmartseva Irina, Guan Xiang Rong, Herndon James E", "protein_xref_pubmed", "18065730", "protein_xref_biomarkerdb", "A0472" ], [ "Q96QU8-1", "Elevated XPO6 expression as a potential prognostic biomarker for prostate cancer recurrence.", "Frontiers in bioscience (Scholar edition)", "2016 Jan 1", "Hao J, Chiang YT, Gout PW, Wang Y", "protein_xref_pubmed", "26709895", "protein_xref_biomarkerdb", "A0277" ], [ "P55268-1", "Identification of tumor-educated platelet biomarkers of non-small-cell lung cancer.", "OncoTargets and therapy", "2018", "Sheng M, Dong Z, Xie Y", "protein_xref_pubmed", "30532555", "protein_xref_biomarkerdb", "A0478" ], [ "Q9NS23-1", "Prognostic value of RASSF1 promoter methylation in prostate cancer.", "The Journal of urology", "2014-12", "Daniunaite Kristina, Jarmalaite Sonata, Kalinauskaite Neringa, Petroska Donatas, Laurinavicius Arvydas, Lazutka Juozas R, Jankevicius Feliksas", "protein_xref_pubmed", "24980613", "protein_xref_biomarkerdb", "A0455" ], [ "P01034-1", "Evaluation of serum procathepsin B, cystatin B and cystatin C as possible biomarkers of ovarian cancer.", "International journal of circumpolar health", "2013", "Gashenko EA, Lebedeva VA, Brak IV, Tsykalenko EA, Vinokurova GV, Korolenko TA", "protein_xref_pubmed", "23986888", "protein_xref_biomarkerdb", "A0049" ], [ "P09603-1", "VEGF, M-CSF and CA 15-3 as a new tumor marker panel in breast malignancies: a multivariate analysis with ROC curve.", "Growth factors (Chur, Switzerland)", "2013 Jun", "Lawicki S, Bedkowska GE, Szmitkowski M", "protein_xref_pubmed", "23688065", "protein_xref_biomarkerdb", "A0086" ], [ "Q8TEA8-1", "Identification of tumor-educated platelet biomarkers of non-small-cell lung cancer.", "OncoTargets and therapy", "2018", "Sheng M, Dong Z, Xie Y", "protein_xref_pubmed", "30532555", "protein_xref_biomarkerdb", "A0478" ], [ "P16070-1", "Probing the O-glycoproteome of gastric cancer cell lines for biomarker discovery.", "Molecular & cellular proteomics : MCP", "2015 Jun", "Campos D, Freitas D, Gomes J, Magalhaes A, Steentoft C, Gomes C, Vester-Christensen MB, Ferreira JA, Afonso LP, Santos LL, Pinto de Sousa J, Mandel U, Clausen H, Vakhrushev SY, Reis CA", "protein_xref_pubmed", "25813380", "protein_xref_biomarkerdb", "A0492" ], [ "Q9NV31-1", "The oncofetal protein IMP3: a novel biomarker for endometrial serous carcinoma.", "The American journal of surgical pathology", "2008 Feb", "Zheng W, Yi X, Fadare O, Liang SX, Martel M, Schwartz PE, Jiang Z", "protein_xref_pubmed", "18223334", "protein_xref_biomarkerdb", "A0357" ], [ "P56211-1", "ARPP-19 Mediates Herceptin Resistance via Regulation of CD44 in Gastric Cancer.", "OncoTargets and therapy", "2020", "Gao X, Lu C, Chen C, Sun K, Liang Q, Shuai J, Wang X, Xu Y", "protein_xref_pubmed", "32753897", "protein_xref_biomarkerdb", "A0361" ], [ "P02741-1", "A Tool for Early Prediction of Severe Coronavirus Disease 2019 (COVID-19): A Multicenter Study Using the Risk Nomogram in Wuhan and Guangdong, China.", "Clinical infectious diseases : an official publication of the Infectious Diseases Society of America", "2020 Jul 28", "Gong J, Ou J, Qiu X, Jie Y, Chen Y, Yuan L, Cao J, Tan M, Xu W, Zheng F, Shi Y, Hu B", "protein_xref_pubmed", "32296824", "protein_xref_biomarkerdb", "A0009" ], [ "P24844-1", "Identification of tumor-educated platelet biomarkers of non-small-cell lung cancer.", "OncoTargets and therapy", "2018", "Sheng M, Dong Z, Xie Y", "protein_xref_pubmed", "30532555", "protein_xref_biomarkerdb", "A0478" ], [ "P01584-1", "An inflammatory cytokine signature helps predict COVID-19 severity and death.", "medRxiv : the preprint server for health sciences", "2020 May 30", "Del Valle DM, Kim-Schulze S, Hsin-Hui H, Beckmann ND, Nirenberg S, Wang B, Lavin Y, Swartz T, Madduri D, Stock A, Marron T, Xie H, Patel MK, van Oekelen O, Rahman A, Kovatch P, Aberg J, Schadt E, Jagannath S, Mazumdar M, Charney A, Firpo-Betancourt A, Mendu DR, Jhang J, Reich D, Sigel K, Cordon-Cardo C, Feldmann M, Parekh S, Merad M, Gnjatic S", "protein_xref_pubmed", "32511562", "protein_xref_biomarkerdb", "A0445" ] ] }, "readme": "Name\n - Human Protein Biomarkers Citations (Biomarker Database)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2023-03-03T02:24:59.574Z\n\nModified on\n - 2023-03-03T02:40:02.789Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - Human Protein Biomarkers Citations dataset contains details of the publication present in the dataset Human Protein Cancer Biomarkers https://data.glygen.org/GLY_000625\n\nDescription Domain\n Keywords\n - Biomarkers\n - BiomarkerDB\n\n Pipeline Steps\n - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: doi_citations.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/compiled/doi_citations.csv\n Name: human_protein_biomarkers.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_protein_biomarkers.csv\n Output Subdomain\n Name: human_protein_citations_biomarkers.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_protein_citations_biomarkers.csv\n Name: human_protein_citations_biomarkers.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_protein_citations_biomarkers.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"310\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"389\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"240\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"265\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"389\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"389\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"294\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/human_protein_citations_biomarkers.csv" }