{ "bcoid": "GLY_000715", "title": "Fruitfly O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas)", "description": "The Fruitfly O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas) dataset contains details of the publication ...", "filename": "fruitfly_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Proteoform" ], "tag": [ "Protein Citations O-GlcNAc (O-GlcNAc Atlas)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A1Z877-1...", "A mutant O-G..." ], [ "E1JI40-1...", "A mutant O-G..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "A1Z877-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "A1Z877", "G49108TO" ], [ "E1JI40-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "E1JI40", "G49108TO" ], [ "M9PHT1-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "M9PHT1", "G49108TO" ], [ "P07663-1", "O-GlcNAcylation of PERIOD regulates its interaction with CLOCK and timing of circadian transcriptional repression.", "PLoS genetics", "2019 Jan", "Li YH, Liu X, Vanselow JT, Zheng H, Schlosser A, Chiu JC", "protein_xref_pubmed", "30703153", "protein_xref_oglcnac_atlas", "P07663", "G49108TO" ], [ "P12080-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "P12080", "G49108TO" ], [ "P13607-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "P13607", "G49108TO" ], [ "P18289-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "P18289", "G49108TO" ], [ "P39769-1", "Precision Mapping of O-Linked N-Acetylglucosamine Sites in Proteins Using Ultraviolet Photodissociation Mass Spectrometry.", "Journal of the American Chemical Society", "2020 Jul 1", "Escobar EE, King DT, Serrano-Negron JE, Alteen MG, Vocadlo DJ, Brodbelt JS", "protein_xref_pubmed", "32510947", "protein_xref_oglcnac_atlas", "P39769", "G49108TO" ], [ "P47825-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "P47825", "G49108TO" ], [ "Q24368-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q24368", "G49108TO" ], [ "Q7JQR3-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q7JQR3", "G49108TO" ], [ "Q7JXF5-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q7JXF5", "G49108TO" ], [ "Q7K0D8-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q7K0D8", "G49108TO" ], [ "Q7KTF8-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q7KTF8", "G49108TO" ], [ "Q8MLT4-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q8MLT4", "G49108TO" ], [ "Q9V3N1-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9V3N1", "G49108TO" ], [ "Q9V4C8-1", "A mutant O-GlcNAcase as a probe to reveal global dynamics of protein O-GlcNAcylation during Drosophila embryonic development.", "The Biochemical journal", "2015 Sep 1", "Mariappa D, Selvan N, Borodkin V, Alonso J, Ferenbach AT, Shepherd C, Navratilova IH, vanAalten DMF", "protein_xref_pubmed", "26348912", "protein_xref_oglcnac_atlas", "Q9V4C8", "G49108TO" ], [ "Q9V4C8-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9V4C8", "G49108TO" ], [ "Q9V6L0-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9V6L0", "G49108TO" ], [ "Q9V9X0-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9V9X0", "G49108TO" ], [ "Q9VAU1-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9VAU1", "G49108TO" ], [ "Q9VCD1-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9VCD1", "G49108TO" ], [ "Q9VDV3-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9VDV3", "G49108TO" ], [ "Q9VI72-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9VI72", "G49108TO" ], [ "Q9VUH6-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9VUH6", "G49108TO" ], [ "Q9VWN5-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9VWN5", "G49108TO" ], [ "Q9VXE6-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9VXE6", "G49108TO" ], [ "Q9VXM5-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9VXM5", "G49108TO" ], [ "Q9W2E7-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9W2E7", "G49108TO" ], [ "Q9W2U7-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9W2U7", "G49108TO" ], [ "Q9W3Q5-1", "A mutant O-GlcNAcase enriches Drosophila developmental regulators.", "Nature chemical biology", "2017 Aug", "Selvan N, Williamson R, Mariappa D, Campbell DG, Gourlay R, Ferenbach AT, Aristotelous T, Hopkins-Navratilova I, Trost M, van Aalten DMF", "protein_xref_pubmed", "28604694", "protein_xref_oglcnac_atlas", "Q9W3Q5", "G49108TO" ] ] }, "readme": "Name\n - Fruitfly O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2023-02-27T21:08:01.227Z\n\nModified on\n - 2023-03-06T20:17:44.645Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Jungfeng Ma [junfeng.ma@georgetown.edu ]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas) dataset contains details of the publication present in the dataset Fruitfly O-GlcNAc Glycosylation Sites (O-GlcNAc Atlas) https://data.glygen.org/GLY_000711, contributed by Jungfeng Ma's group.\n\nDescription Domain\n Keywords\n - O-GlcNAc\n - Publications\n - Citations\n - PubMed\n\n Pipeline Steps\n - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: fruitfly_proteoform_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/fruitfly_proteoform_glycosylation_sites_oglcnac_atlas.csv\n Output Subdomain\n Name: fruitfly_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/fruitfly_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n Name: fruitfly_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/fruitfly_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"30\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"4\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"4\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"4\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"4\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"4\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"30\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/fruitfly_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv" }