{ "bcoid": "GLY_000694", "title": "Mouse Xref The O-GlcNAc Database", "description": "Mouse Xref The O-GlcNAc Database contains mouse (taxid:10090) UniProtKB canonical accessions mapped to ...", "filename": "mouse_protein_xref_oglcnac_db.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Proteoform" ], "tag": [ "The O-GlcNAc Database" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q80WT5-1...", "protein_xref..." ], [ "P03899-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q80WT5-1", "protein_xref_oglcnac_db", "Q80WT5", "O-GlcNAc MCW" ], [ "P03899-1", "protein_xref_oglcnac_db", "P03899", "O-GlcNAc MCW" ], [ "P03893-1", "protein_xref_oglcnac_db", "P03893", "O-GlcNAc MCW" ], [ "P52479-1", "protein_xref_oglcnac_db", "P52479", "O-GlcNAc MCW" ], [ "Q9QYH6-1", "protein_xref_oglcnac_db", "Q9QYH6", "O-GlcNAc MCW" ], [ "Q3URK3-1", "protein_xref_oglcnac_db", "Q3URK3", "O-GlcNAc MCW" ], [ "Q9EP71-1", "protein_xref_oglcnac_db", "Q9EP71", "O-GlcNAc MCW" ], [ "P53702-1", "protein_xref_oglcnac_db", "P53702", "O-GlcNAc MCW" ], [ "O08912-1", "protein_xref_oglcnac_db", "O08912", "O-GlcNAc MCW" ], [ "O08915-1", "protein_xref_oglcnac_db", "O08915", "O-GlcNAc MCW" ], [ "O08917-1", "protein_xref_oglcnac_db", "O08917", "O-GlcNAc MCW" ], [ "Q80WC3-1", "protein_xref_oglcnac_db", "Q80WC3", "O-GlcNAc MCW" ], [ "Q80WC1-1", "protein_xref_oglcnac_db", "Q80WC1", "O-GlcNAc MCW" ], [ "Q80WC7-1", "protein_xref_oglcnac_db", "Q80WC7", "O-GlcNAc MCW" ], [ "P50429-1", "protein_xref_oglcnac_db", "P50429", "O-GlcNAc MCW" ], [ "Q8BTJ4-1", "protein_xref_oglcnac_db", "Q8BTJ4", "O-GlcNAc MCW" ], [ "P59708-1", "protein_xref_oglcnac_db", "P59708", "O-GlcNAc MCW" ], [ "F8VQK3-1", "protein_xref_oglcnac_db", "F8VQK3", "O-GlcNAc MCW" ], [ "Q3V3Q7-1", "protein_xref_oglcnac_db", "Q3V3Q7", "O-GlcNAc MCW" ], [ "Q9D517-1", "protein_xref_oglcnac_db", "Q9D517", "O-GlcNAc MCW" ], [ "A2RSY6-1", "protein_xref_oglcnac_db", "A2RSY6", "O-GlcNAc MCW" ], [ "Q8BGW1-1", "protein_xref_oglcnac_db", "Q8BGW1", "O-GlcNAc MCW" ], [ "Q3U3I9-1", "protein_xref_oglcnac_db", "Q3U3I9", "O-GlcNAc MCW" ], [ "A2AAE1-1", "protein_xref_oglcnac_db", "A2AAE1", "O-GlcNAc MCW" ], [ "Q9QZD9-1", "protein_xref_oglcnac_db", "Q9QZD9", "O-GlcNAc MCW" ], [ "Q9QZD8-1", "protein_xref_oglcnac_db", "Q9QZD8", "O-GlcNAc MCW" ], [ "E9Q2C0-1", "protein_xref_oglcnac_db", "E9Q2C0", "O-GlcNAc MCW" ], [ "E9PZM7-1", "protein_xref_oglcnac_db", "E9PZM7", "O-GlcNAc MCW" ], [ "Q9WUZ7-1", "protein_xref_oglcnac_db", "Q9WUZ7", "O-GlcNAc MCW" ], [ "Q91YI0-1", "protein_xref_oglcnac_db", "Q91YI0", "O-GlcNAc MCW" ], [ "Q9WUZ9-1", "protein_xref_oglcnac_db", "Q9WUZ9", "O-GlcNAc MCW" ], [ "Q69Z99-1", "protein_xref_oglcnac_db", "Q69Z99", "O-GlcNAc MCW" ], [ "Q5NCY0-1", "protein_xref_oglcnac_db", "Q5NCY0", "O-GlcNAc MCW" ], [ "Q9ESN6-1", "protein_xref_oglcnac_db", "Q9ESN6", "O-GlcNAc MCW" ], [ "E9PUL3-1", "protein_xref_oglcnac_db", "E9PUL3", "O-GlcNAc MCW" ], [ "E9PUL5-1", "protein_xref_oglcnac_db", "E9PUL5", "O-GlcNAc MCW" ], [ "Q9D5T0-1", "protein_xref_oglcnac_db", "Q9D5T0", "O-GlcNAc MCW" ], [ "O88307-1", "protein_xref_oglcnac_db", "O88307", "O-GlcNAc MCW" ], [ "Q8VCU1-1", "protein_xref_oglcnac_db", "Q8VCU1", "O-GlcNAc MCW" ], [ "Q8BGH2-1", "protein_xref_oglcnac_db", "Q8BGH2", "O-GlcNAc MCW" ], [ "Q8BGH7-1", "protein_xref_oglcnac_db", "Q8BGH7", "O-GlcNAc MCW" ], [ "Q8VEK3-1", "protein_xref_oglcnac_db", "Q8VEK3", "O-GlcNAc MCW" ], [ "Q8VEK0-1", "protein_xref_oglcnac_db", "Q8VEK0", "O-GlcNAc MCW" ], [ "P83093-1", "protein_xref_oglcnac_db", "P83093", "O-GlcNAc MCW" ], [ "Q9Z1Z0-1", "protein_xref_oglcnac_db", "Q9Z1Z0", "O-GlcNAc MCW" ], [ "Q9Z1Z2-1", "protein_xref_oglcnac_db", "Q9Z1Z2", "O-GlcNAc MCW" ], [ "Q8C0V0-1", "protein_xref_oglcnac_db", "Q8C0V0", "O-GlcNAc MCW" ], [ "P05532-1", "protein_xref_oglcnac_db", "P05532", "O-GlcNAc MCW" ], [ "O70133-1", "protein_xref_oglcnac_db", "O70133", "O-GlcNAc MCW" ], [ "O70138-1", "protein_xref_oglcnac_db", "O70138", "O-GlcNAc MCW" ], [ "O08919-1", "protein_xref_oglcnac_db", "O08919", "O-GlcNAc MCW" ], [ "Q9CZB0-1", "protein_xref_oglcnac_db", "Q9CZB0", "O-GlcNAc MCW" ], [ "Q3TKT4-1", "protein_xref_oglcnac_db", "Q3TKT4", "O-GlcNAc MCW" ], [ "P43006-1", "protein_xref_oglcnac_db", "P43006", "O-GlcNAc MCW" ], [ "Q9QZQ0-1", "protein_xref_oglcnac_db", "Q9QZQ0", "O-GlcNAc MCW" ], [ "Q91VT4-1", "protein_xref_oglcnac_db", "Q91VT4", "O-GlcNAc MCW" ], [ "Q0VGY8-1", "protein_xref_oglcnac_db", "Q0VGY8", "O-GlcNAc MCW" ], [ "Q5SSW2-1", "protein_xref_oglcnac_db", "Q5SSW2", "O-GlcNAc MCW" ], [ "P62281-1", "protein_xref_oglcnac_db", "P62281", "O-GlcNAc MCW" ], [ "Q8BNN1-1", "protein_xref_oglcnac_db", "Q8BNN1", "O-GlcNAc MCW" ], [ "Q8VE88-1", "protein_xref_oglcnac_db", "Q8VE88", "O-GlcNAc MCW" ], [ "Q9R0M0-1", "protein_xref_oglcnac_db", "Q9R0M0", "O-GlcNAc MCW" ], [ "O88491-1", "protein_xref_oglcnac_db", "O88491", "O-GlcNAc MCW" ], [ "O88492-1", "protein_xref_oglcnac_db", "O88492", "O-GlcNAc MCW" ], [ "O88495-1", "protein_xref_oglcnac_db", "O88495", "O-GlcNAc MCW" ], [ "O08663-1", "protein_xref_oglcnac_db", "O08663", "O-GlcNAc MCW" ], [ "O35887-1", "protein_xref_oglcnac_db", "O35887", "O-GlcNAc MCW" ], [ "Q8CFD4-1", "protein_xref_oglcnac_db", "Q8CFD4", "O-GlcNAc MCW" ], [ "A0A075B5V1-1", "protein_xref_oglcnac_db", "A0A075B5V1", "O-GlcNAc MCW" ], [ "O09131-1", "protein_xref_oglcnac_db", "O09131", "O-GlcNAc MCW" ], [ "O35345-1", "protein_xref_oglcnac_db", "O35345", "O-GlcNAc MCW" ], [ "O35343-1", "protein_xref_oglcnac_db", "O35343", "O-GlcNAc MCW" ], [ "Q8BJ71-1", "protein_xref_oglcnac_db", "Q8BJ71", "O-GlcNAc MCW" ], [ "Q8R2S8-1", "protein_xref_oglcnac_db", "Q8R2S8", "O-GlcNAc MCW" ], [ "P42225-1", "protein_xref_oglcnac_db", "P42225", "O-GlcNAc MCW" ], [ "Q9QZ59-1", "protein_xref_oglcnac_db", "Q9QZ59", "O-GlcNAc MCW" ], [ "Q9EPK6-1", "protein_xref_oglcnac_db", "Q9EPK6", "O-GlcNAc MCW" ], [ "Q9EPK7-1", "protein_xref_oglcnac_db", "Q9EPK7", "O-GlcNAc MCW" ], [ "Q9EPK5-1", "protein_xref_oglcnac_db", "Q9EPK5", "O-GlcNAc MCW" ], [ "Q9JLF6-1", "protein_xref_oglcnac_db", "Q9JLF6", "O-GlcNAc MCW" ], [ "Q8BUV3-1", "protein_xref_oglcnac_db", "Q8BUV3", "O-GlcNAc MCW" ], [ "Q3TZ89-1", "protein_xref_oglcnac_db", "Q3TZ89", "O-GlcNAc MCW" ], [ "Q6ZPS6-1", "protein_xref_oglcnac_db", "Q6ZPS6", "O-GlcNAc MCW" ], [ "P01867-1", "protein_xref_oglcnac_db", "P01867", "O-GlcNAc MCW" ] ] }, "readme": "Name\n - Mouse Xref The O-GlcNAc Database\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2022-09-06T16:20:17.127842\n\nModified on\n - 2022-09-26T09:08:12.745628\n\nCreated by\n - [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Stephanie Olivier-Van Stichelen [solivier@mcw.edu], Eugenia Wulff-Fuentes [ewulff@mcw.edu], Rex R. Berendt [rberendt@mcw.edu], Logan Massman [lmassman@mcw.edu], Laura Danner [ldanner@mcw.edu]\n\nChecksum\n - \n\nUsability Domain\n - Mouse Xref The O-GlcNAc Database contains mouse (taxid:10090) UniProtKB canonical accessions mapped to the The O-GlcNAc Database accessions.\n\nDescription Domain\n Keywords\n - O-GlcNAc\n - PubMed\n\n Pipeline Steps\n - Step-1: The script maps the UniProtKB accesions to the The O-GlcNAc Database accessions.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_proteoform_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_proteoform_glycosylation_sites_oglcnac_mcw.csv\n Output Subdomain\n Name: mouse_protein_xref_oglcnac_db.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_protein_xref_oglcnac_db.csv\n Name: mouse_protein_xref_oglcnac_db.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_protein_xref_oglcnac_db.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"4622\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"4622\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/mouse_protein_xref_oglcnac_db.csv" }