{ "bcoid": "GLY_000655", "title": "Fruitfly Protein Submitted Names (UniProtKB)", "description": "The Fruitfly Protein Submitted Names (UniProtKB) dataset contains UniProtKB submitted names for fruitfly ...", "filename": "fruitfly_protein_submittednames.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Protein" ], "tag": [ "Protein Submitted Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "M9PJ12-1...", "Uncharacteri..." ], [ "A2VEV2-1...", "IP18436p..." ] ], "headers": [ "uniprotkb_ca...", "submitted_na..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "submitted_name_full" }, { "type": "string", "label": "submitted_name_short" }, { "type": "string", "label": "ec_name" } ], [ "M9PJ12-1", "Uncharacterized protein, isoform E", "", "" ], [ "A2VEV2-1", "IP18436p", "", "" ], [ "A2VEV2-1", "IP18536p", "", "" ], [ "A2VEV0-1", "IP18415p", "", "" ], [ "Q9VE85-1", "Nucleoporin 43kD", "", "" ], [ "A0A6H2EE55-1", "Uncharacterized protein, isoform D", "", "" ], [ "A0A6F7UCJ3-1", "Uncharacterized protein", "", "" ], [ "Q9VRR3-1", "Uncharacterized protein, isoform B", "", "" ], [ "Q9VRR3-1", "Uncharacterized protein, isoform A", "", "" ], [ "Q9VRR0-1", "Uncharacterized protein, isoform B", "", "" ], [ "A1ZB48-1", "FI01427p", "", "" ], [ "A1ZB49-1", "Uncharacterized protein", "", "" ], [ "Q9VLI3-1", "IP07829p", "", "" ], [ "Q9VLI4-1", "Raw, isoform C", "", "" ], [ "Q9VLI4-1", "Raw, isoform A", "", "" ], [ "Q9VLI4-1", "Raw, isoform E", "", "" ], [ "Q9VLI6-1", "GH09387p", "", "" ], [ "Q9VLI6-1", "Uncharacterized protein, isoform A", "", "1.11.1.6" ], [ "Q9VLI6-1", "Uncharacterized protein, isoform C", "", "" ], [ "Q9VLI6-1", "CG9314 protein", "", "" ], [ "Q9VLI6-1", "CG9314-PA", "", "" ], [ "M9PB30-1", "Dumpy, isoform Q", "", "" ], [ "Q8SXV4-1", "Uncharacterized protein, isoform A", "", "" ], [ "Q8SXV4-1", "Uncharacterized protein, isoform B", "", "" ], [ "Q8SXV4-1", "RH68528p", "", "" ], [ "Q95R34-1", "Uncharacterized protein, isoform C", "", "" ], [ "Q95R34-1", "GH16463p", "", "" ], [ "Q95R34-1", "Uncharacterized protein, isoform A", "", "" ], [ "Q8SXV9-1", "Uncharacterized protein, isoform B", "", "" ], [ "Q8SXV9-1", "Uncharacterized protein, isoform A", "", "" ], [ "Q8SXV9-1", "RH61745p", "", "" ], [ "Q9VME8-1", "Pickpocket 14", "", "" ], [ "Q9VME9-1", "Pickpocket 7", "", "" ], [ "Q9VME0-1", "FI03602p", "", "" ], [ "Q9VME0-1", "Uncharacterized protein, isoform B", "", "" ], [ "Q9VME0-1", "Uncharacterized protein, isoform A", "", "" ], [ "Q9VME1-1", "FI01864p", "", "" ], [ "Q9VME2-1", "LP16634p", "", "" ], [ "Q9VME2-1", "Neprilysin-like 6", "", "" ], [ "Q9VME3-1", "Neprilysin-like 5", "", "" ], [ "Q9VVS1-1", "Dicarboxylate carrier 4, isoform C", "", "" ], [ "Q9VVS1-1", "IP09652p", "", "" ], [ "Q9VVS1-1", "Dicarboxylate carrier 4, isoform A", "", "" ], [ "Q9VME5-1", "Slow as molasses, isoform C", "", "" ], [ "Q9VME5-1", "Slow as molasses, isoform B", "", "" ], [ "Q9VVS3-1", "FI01028p", "", "" ], [ "Q9VZZ6-1", "RE30174p", "", "" ], [ "Q9VZZ6-1", "CG16985 protein", "", "" ], [ "Q9VZZ6-1", "CG16985-PA", "", "" ], [ "Q9VZZ6-1", "GEO07616p1", "", "" ], [ "A0A0B4KFC0-1", "Schnurri, isoform F", "", "" ], [ "A0A0B4KFC4-1", "Ribbon, isoform C", "", "" ], [ "A0A0B4KFC9-1", "Uncharacterized protein, isoform C", "", "" ], [ "Q9I7P2-1", "GEO13068p1", "", "" ], [ "Q9I7P2-1", "Uncharacterized protein, isoform B", "", "" ], [ "Q9I7P2-1", "AT24795p", "", "" ], [ "Q9I7P2-1", "Uncharacterized protein, isoform A", "", "" ], [ "Q7KN74-1", "Tetratricopeptide repeat domain 7, isoform A", "", "" ], [ "Q7KN75-1", "Dodeca-satellite-binding protein 1, isoform H", "", "" ], [ "Q7KN75-1", "Dodeca-satellite-binding protein 1, isoform F", "", "" ], [ "Q7KN75-1", "Dodeca-satellite-binding protein 1, isoform D", "", "" ], [ "Q7KN75-1", "Dodeca-satellite-binding protein 1, isoform B", "", "" ], [ "Q7KN75-1", "Dodeca-satellite-binding protein 1, isoform A", "", "" ], [ "Q7KN75-1", "Dodeca-satellite-binding protein 1, isoform E", "", "" ], [ "Q7KN75-1", "Dodeca-satellite-binding protein 1, isoform G", "", "" ], [ "Q9VWS9-1", "Uncharacterized protein", "", "" ], [ "Q9VWS5-1", "Uncharacterized protein", "", "" ], [ "Q9VWS7-1", "MIP23504p", "", "" ], [ "Q9VWS1-1", "LD25271p", "", "" ], [ "Q9VWS3-1", "Rab11 interacting protein, isoform A", "", "" ], [ "G4LU05-1", "RE42119p1", "", "" ], [ "G4LU05-1", "Neuropilin and tolloid-like, isoform B", "", "" ], [ "Q8SYY6-1", "Uncharacterized protein, isoform A", "", "" ], [ "Q8SYY6-1", "Uncharacterized protein, isoform B", "", "" ], [ "Q8SYY6-1", "RE27904p", "", "" ], [ "Q8SYY6-1", "GEO09675p1", "", "" ], [ "Q9VZ85-1", "Rho guanine nucleotide exchange factor at 64C, isoform B", "", "" ], [ "Q9VZ85-1", "Rho guanine nucleotide exchange factor at 64C, isoform A", "", "" ], [ "Q9VBR7-1", "Rha", "", "" ], [ "A0A0B4JDC9-1", "RIM-binding protein, isoform F", "", "" ], [ "Q9VUR2-1", "LD31322p", "", "" ], [ "Q9VE80-1", "Uncharacterized protein, isoform B", "", "1.1.1.300" ], [ "Q9VE80-1", "Uncharacterized protein, isoform D", "", "" ], [ "A1Z8T6-1", "Organic solute carrier partner 1", "", "" ] ] }, "readme": "Name\n - Fruitfly Protein Submitted Names (UniProtKB)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2022-08-31T11:11:10.067141\n\nModified on\n - 2022-09-26T09:08:12.491498\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly Protein Submitted Names (UniProtKB) dataset contains UniProtKB submitted names for fruitfly [taxid:7227] UniProtKB/TrEMBL proteins accessions. In UniProt, UniProtKB/TrEMBL entries usually have 'Submitted name' which may later be improved by automatic annotation procedures but if not, it remains as provided by the submitter until the entry is manually annotated and integrated to UniProtKB/Swiss-Prot. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein submitted name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB submitted names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/extract-from-endpoint.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_submittednames.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/fruitfly_protein_submittednames.csv\n Name: fruitfly_protein_submittednames.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/fruitfly_protein_submittednames.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"7564\"\n Name: \"submitted_name_full\"\n Description: \"The full submitted protein name in UniProtKB\"\n Unique Values: \"10046\"\n Name: \"submitted_name_short\"\n Description: \"The short submitted protein name in UniProtKB\"\n Unique Values: \"1\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"282\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/fruitfly_protein_submittednames.csv" }