{
    "bcoid": "GLY_000642",
    "title": "Fruitfly Gene Names (NCBI RefSeq)",
    "description": "The Fruitfly Gene Names (NCBI RefSeq) dataset contains fruitfly [taxid:7227] gene Names/names (primary ...",
    "filename": "fruitfly_protein_genenames_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Information"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P03896-1...",
                "YP_009047266..."
            ],
            [
                "P03896-1...",
                "YP_009047266..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "refseq_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_gene_name"
                }
            ],
            [
                "P03896-1",
                "YP_009047266",
                "ND2"
            ],
            [
                "P03896-1",
                "YP_009047266",
                "mt:ND2"
            ],
            [
                "P00399-1",
                "YP_009047267",
                "COX1"
            ],
            [
                "P00399-1",
                "YP_009047267",
                "mt:CoI"
            ],
            [
                "P00408-1",
                "YP_009047268",
                "COX2"
            ],
            [
                "P00408-1",
                "YP_009047268",
                "mt:CoII"
            ],
            [
                "P84345-1",
                "YP_009047269",
                "ATP8"
            ],
            [
                "P84345-1",
                "YP_009047269",
                "mt:ATPase8"
            ],
            [
                "P00850-1",
                "YP_009047270",
                "ATP6"
            ],
            [
                "P00850-1",
                "YP_009047270",
                "mt:ATPase6"
            ],
            [
                "P00417-1",
                "YP_009047271",
                "COX3"
            ],
            [
                "P00417-1",
                "YP_009047271",
                "mt:CoIII"
            ],
            [
                "P18930-1",
                "YP_009047272",
                "ND3"
            ],
            [
                "P18930-1",
                "YP_009047272",
                "mt:ND3"
            ],
            [
                "P18932-1",
                "YP_009047273",
                "ND5"
            ],
            [
                "P18932-1",
                "YP_009047273",
                "mt:ND5"
            ],
            [
                "P18931-1",
                "YP_009047274",
                "ND4"
            ],
            [
                "P18931-1",
                "YP_009047274",
                "mt:ND4"
            ],
            [
                "P18934-1",
                "YP_009047275",
                "ND4L"
            ],
            [
                "P18934-1",
                "YP_009047275",
                "mt:ND4L"
            ],
            [
                "P18933-1",
                "YP_009047276",
                "ND6"
            ],
            [
                "P18933-1",
                "YP_009047276",
                "mt:ND6"
            ],
            [
                "P18935-1",
                "YP_009047277",
                "CYTB"
            ],
            [
                "P18935-1",
                "YP_009047277",
                "mt:Cyt-b"
            ],
            [
                "P18929-1",
                "YP_009047278",
                "ND1"
            ],
            [
                "P18929-1",
                "YP_009047278",
                "mt:ND1"
            ],
            [
                "A8QI34-1",
                "NP_001104092",
                "JYalpha"
            ],
            [
                "A8QI34-1",
                "NP_001104092",
                "CG17923; CG40625; CG45760; Dmel\\CG45760; JY-alpha; Jyalpha; JYAlpha"
            ],
            [
                "Q9V4A7-1",
                "NP_001245400",
                "PlexB"
            ],
            [
                "Q9V4A7-1",
                "NP_001245400",
                "CG17245; Dmel\\CG17245; plex; plex B; Plex B; plexB; PLEXB"
            ],
            [
                "P19538-1",
                "NP_524617",
                "ci"
            ],
            [
                "P19538-1",
                "NP_524617",
                "Ce; CG2125; Ci; CI; ci-D; Ci/Gli; Ci/GLI; ci155; Ci155; ciA; ciD; CiD; CID; ciR; ci[D]; Ci[D]; d Ci; Dmel\\CG2125; Gli; l(4)102ABc; l(4)13; l(4)17; Siah"
            ],
            [
                "P55830-1",
                "NP_001245404",
                "RpS3A"
            ],
            [
                "P55830-1",
                "NP_001245404",
                "anon-EST:Liang-2.29; C3; CG2168; chr4:86830..87021; chr4:87101..87234; chr4:87503..87595; clone 2.29; Dmel\\CG2168; l(4)102ABa; M(4)101; M(4)57g; M(4)[57g]; M57g; M[57g]; Rps3A; RpS3a; RPS3a; RPS3A; Rsp3A; S1e"
            ],
            [
                "Q8IMA8-1",
                "NP_726528",
                "pan"
            ],
            [
                "Q8IMA8-1",
                "NP_726528",
                "CG17964; CG32005; CG34403; d-TCF; Dm Pan; Dmel\\CG34403; dTcf; dTCF; DTcf; DTCF; IA5; l(4)102ABb; l(4)13; Lef; LEF; LEF-1; LEF/TCF; LEF/TCF-1; lef1; Lef1; LEF1; LEF1/TCF; Pan; PAN; pan.dTCF; tcf; Tcf; TCF; Tcf-1; Tcf/Lef; Tcf/LEF; TCF/LEF; TCF/LEF1; TCF/Pan"
            ],
            [
                "Q0KIE7-1",
                "NP_001162819",
                "Ank"
            ],
            [
                "Q0KIE7-1",
                "NP_001162819",
                "ank; ANK; CG1651; CG32008; dank1; Dank1; DAnk1; Dmel\\CG1651"
            ],
            [
                "A8DZ26-1",
                "NP_001096849",
                "anne"
            ],
            [
                "A8DZ26-1",
                "NP_001096849",
                "ATP13A2; BcDNA:LD05303; BcDNA:LD19039; BcDNA:SD17880; CG32000; dATP13A2; Dm V-1; Dmel\\CG32000"
            ],
            [
                "Q8IMA2-1",
                "NP_726538",
                "CG32006"
            ],
            [
                "Q8IMA2-1",
                "NP_726538",
                "BcDNA:RE51913; DmCg32006; Dmel\\CG32006; FoxJ1"
            ],
            [
                "Q8SYQ4-1",
                "NP_001284709",
                "CG31997"
            ],
            [
                "Q8SYQ4-1",
                "NP_001284709",
                "BcDNA:RE42475; BEST:GH25016; Dmel\\CG31997"
            ],
            [
                "Q2PDM3-1",
                "NP_001033801",
                "CG33978"
            ],
            [
                "Q2PDM3-1",
                "NP_001033801",
                "Dmel\\CG33978; FBgn0053978"
            ],
            [
                "H9XVM3-1",
                "NP_001245408",
                "Arl4"
            ],
            [
                "H9XVM3-1",
                "NP_001245408",
                "arl4; ARL4B; BcDNA:AT26185; CG 2219; CG2219; Dmel\\CG2219; Q9V4B2"
            ],
            [
                "Q7JUN3-1",
                "NP_001245409",
                "Abcd1"
            ],
            [
                "Q7JUN3-1",
                "NP_001245409",
                "ABCD; ABCD1/2; CG2316; dABCD; DmCG2316; Dmel\\CG2316"
            ],
            [
                "Q9V4B6-1",
                "NP_726548",
                "CG31998"
            ],
            [
                "Q9V4B6-1",
                "NP_726548",
                "CG11572; CG11578; Dmel\\CG31998"
            ],
            [
                "Q9XYM0-1",
                "NP_651908",
                "Crk"
            ],
            [
                "Q9XYM0-1",
                "NP_651908",
                "CED-2; CG1587; crk; CRK; D-Crk; D-CRK; dCrk; dCRK; Dcrk; DCrk; Dmel\\CG1587"
            ],
            [
                "Q9V4B8-1",
                "NP_001284712",
                "CG31999"
            ],
            [
                "Q9V4B8-1",
                "NP_001284712",
                "CG10323; CG11288; CT31491; CT7856; Dmel\\CG31999"
            ],
            [
                "Q9V4C0-1",
                "NP_651912",
                "yellow-h"
            ],
            [
                "Q9V4C0-1",
                "NP_651912",
                "CG1629; Dmel\\CG1629; DPT; yell-h"
            ],
            [
                "H9XVM9-1",
                "NP_001245414",
                "CG1674"
            ],
            [
                "H9XVM9-1",
                "NP_001245414",
                "Dmel\\CG1674"
            ],
            [
                "A8DZ27-1",
                "NP_001096850",
                "dpr7"
            ],
            [
                "A8DZ27-1",
                "NP_001096850",
                "CG33481; Dmel\\CG33481; Dpr-7; Dpr7"
            ],
            [
                "H9XVN1-1",
                "NP_001245416",
                "RhoGAP102A"
            ],
            [
                "H9XVN1-1",
                "NP_001245416",
                "BP1050; CG1748; CG34013; CG42316; Dmel\\CG42316; Dm_4:1183; mlncRNA102B1; rhoGAP102A"
            ],
            [
                "Q86P06-1",
                "NP_995592",
                "NfI"
            ],
            [
                "Q86P06-1",
                "NP_995592",
                "CG2380; Dmel\\CG2380; NFI"
            ],
            [
                "Q9V4C4-1",
                "NP_726557",
                "Syt7"
            ],
            [
                "Q9V4C4-1",
                "NP_726557",
                "CG10322; CG2381; Dmel\\CG2381; dsyt7; Syt 7; Syt VII; syt-7; syt7; SYT7"
            ],
            [
                "Q9V3W9-1",
                "NP_001259052",
                "Rad23"
            ],
            [
                "Q9V3W9-1",
                "NP_001259052",
                "CG1836; DHR23; Dmel\\CG1836; rad23; RAD23"
            ],
            [
                "Q9V4C6-1",
                "NP_001284713",
                "Zip102B"
            ],
            [
                "Q9V4C6-1",
                "NP_001284713",
                "cg2177; CG2177; Dmel\\CG2177; dZip102B; ZIP102B"
            ],
            [
                "Q8SX35-1",
                "NP_726563",
                "Rnf11"
            ],
            [
                "Q8SX35-1",
                "NP_726563",
                "BcDNA:RE41137; BEST:GH26713; CG32850; Dmel\\CG32850; dRNF11; RNF-11; RNF11"
            ],
            [
                "Q59DP9-1",
                "NP_001014689",
                "PMCA"
            ],
            [
                "Q59DP9-1",
                "NP_001014689",
                "BEST:CK; BEST:CK01140; BEST:CK02288; BP1021; CG2165; CG34036; CG42314; CK02288; Dmel\\CG42314"
            ],
            [
                "Q9V4C8-1",
                "NP_001245420",
                "Hcf"
            ],
            [
                "Q9V4C8-1",
                "NP_001245420",
                "anon-WO0172774.48; CG1710; dHcf; dHCF; dHcf1; Dmel\\CG1710; HCF; Hcf1; HCF1; HCF_DROME"
            ],
            [
                "Q7KQN5-1",
                "NP_001245421",
                "dati"
            ],
            [
                "Q7KQN5-1",
                "NP_001245421",
                "CG10204; CG2052; Dmel\\CG2052; DmLin29; Lin29"
            ],
            [
                "Q961D9-1",
                "NP_651922",
                "lgs"
            ],
            [
                "Q961D9-1",
                "NP_651922",
                "BCL9; Bcl9/9l; CG2041; Dm Lgs; Dmel\\CG2041; Lgl; Lgs"
            ],
            [
                "Q7JMV3-1",
                "NP_524622",
                "CaMKI"
            ],
            [
                "Q7JMV3-1",
                "NP_524622",
                "Calcium/calmodulin-dependent protein kinase; CamK1; CaMK1; camKI; caMKI; CamKI; CAMKI; CG1495; dCKI; Dmel\\CG1495"
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly Gene Names (NCBI RefSeq)\n\nVersion\n   - v-2.4.1\n\nCreated on\n  - 2022-08-30T15:40:57.216837\n\nModified on\n   - 2022-09-26T09:08:12.476226\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly Gene Names (NCBI RefSeq) dataset contains fruitfly [taxid:7227] gene Names/names (primary gene name and gene synonyms)  from NCBI RefSeq database.  If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - protein gene names\n   - NCBI RefSeq\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the gene Names/names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: fruitfly_protein_xref_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/fruitfly_protein_xref_refseq.csv\n   Output Subdomain\n      Name: fruitfly_protein_genenames_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/fruitfly_protein_genenames_refseq.csv\n      Name: fruitfly_protein_genenames_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/fruitfly_protein_genenames_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"13651\"\n      Name: \"refseq_ac\"\n     Description: \"Accession in the NCBI RefSeq database\"\n      Unique Values: \"13651\"\n      Name: \"refseq_gene_name\"\n     Description: \"The gene name/symbol in NCBI RefSeq database.\"\n      Unique Values: \"27302\"",
    "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/fruitfly_protein_genenames_refseq.csv"
}