{ "bcoid": "GLY_000637", "title": "Fruitfly Protein Citations (UniProtKB)", "description": "The Fruitfly Protein Citations dataset contains publication information for fruitfly [taxid:7227] UniProtKB ...", "filename": "fruitfly_protein_citations_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Protein" ], "tag": [ "Protein Citations" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q9VYQ0-1...", "A heterochro..." ], [ "Q9W1W9-1...", "Modifiers of..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "Q9VYQ0-1", "A heterochromatin-dependent transcription machinery drives piRNA expression.", "Nature", "2017-09-07", "Andersen Peter Refsing, Tirian Laszlo, Vunjak Milica, Brennecke Julius", "protein_xref_pubmed", "28847004", "protein_xref_uniprotkb", "Q9VYQ0" ], [ "Q9W1W9-1", "Modifiers of muscle and heart cell fate specification identified by gain-of-function screen in Drosophila.", "Mechanisms of development", "2003-09", "Bidet Yannick, Jagla Teresa, Da Ponte Jean-Philippe, Dastugue Bernard, Jagla Krzysztof", "protein_xref_pubmed", "14550529", "protein_xref_uniprotkb", "Q9W1W9" ], [ "Q9VB11-1", "UNC79 and UNC80, putative auxiliary subunits of the NARROW ABDOMEN ion channel, are indispensable for robust circadian locomotor rhythms in Drosophila.", "PloS one", "2013", "Lear Bridget C, Darrah Eric J, Aldrich Benjamin T, Gebre Senetibeb, Scott Robert L, Nash Howard A, Allada Ravi", "protein_xref_pubmed", "24223770", "protein_xref_uniprotkb", "Q9VB11" ], [ "Q6WV20-1", "Functional characterization and expression analysis of members of the UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase family from Drosophila melanogaster.", "The Journal of biological chemistry", "2003-09-12", "Ten Hagen Kelly G, Tran Duy T, Gerken Thomas A, Stein David S, Zhang Zhenyu", "protein_xref_pubmed", "12829714", "protein_xref_uniprotkb", "Q6WV20" ], [ "Q27403-1", "glial cells missing: a binary switch between neuronal and glial determination in Drosophila.", "Cell", "1995-09-22", "Hosoya T, Takizawa K, Nitta K, Hotta Y", "protein_xref_pubmed", "7553844", "protein_xref_uniprotkb", "Q27403" ], [ "Q27403-1", "glide/gcm is expressed and required in the scavenger cell lineage.", "Developmental biology", "1997-11-01", "Bernardoni R, Vivancos V, Giangrande A", "protein_xref_pubmed", "9356176", "protein_xref_uniprotkb", "Q27403" ], [ "Q27403-1", "glial cells missing: a genetic switch that controls glial versus neuronal fate.", "Cell", "1995-09-22", "Jones B W, Fetter R D, Tear G, Goodman C S", "protein_xref_pubmed", "7553843", "protein_xref_uniprotkb", "Q27403" ], [ "Q7K1Z5-1", "UBA5 Mutations Cause a New Form of Autosomal Recessive Cerebellar Ataxia.", "PloS one", "2016", "Duan R, Shi Y, Yu L, Zhang G, Li J, Lin Y, Guo J, Wang J, Shen L, Jiang H, Wang G, Tang B", "protein_xref_pubmed", "26872069", "protein_xref_uniprotkb", "Q7K1Z5" ], [ "P45843-1", "Transport defects as the physiological basis for eye color mutants of Drosophila melanogaster.", "Biochemical genetics", "1975-10", "Sullivan D T, Sullivan M C", "protein_xref_pubmed", "812484", "protein_xref_uniprotkb", "P45843" ], [ "P45843-1", "Mutations in the white gene of Drosophila melanogaster affecting ABC transporters that determine eye colouration.", "Biochimica et biophysica acta", "1999 Jul 15", "Mackenzie SM, Brooker MR, Gill TR, Cox GB, Howells AJ, Ewart GD", "protein_xref_pubmed", "10407069", "protein_xref_uniprotkb", "P45843" ], [ "P45843-1", "white regulates proliferative homeostasis of intestinal stem cells during ageing in Drosophila.", "Nature metabolism", "2021-04", "Sasaki Ayaka, Nishimura Takashi, Takano Tomomi, Naito Saki, Yoo Sa Kan", "protein_xref_pubmed", "33820991", "protein_xref_uniprotkb", "P45843" ], [ "P45843-1", "Drosophila ABC transporter mutants white, brown and scarlet have altered contents and distribution of biogenic amines in the brain.", "The Journal of experimental biology", "2008-11", "Borycz J, Borycz J A, Kub\u00f3w A, Lloyd V, Meinertzhagen I A", "protein_xref_pubmed", "18931318", "protein_xref_uniprotkb", "P45843" ], [ "P45843-1", "Biogenesis of zinc storage granules in Drosophila melanogaster.", "The Journal of experimental biology", "2018-03-19", "Tejeda-Guzm\u00e1n Carlos, Rosas-Arellano Abraham, Kroll Thomas, Webb Samuel M, Barajas-Aceves Martha, Osorio Beatriz, Missirlis Fanis", "protein_xref_pubmed", "29367274", "protein_xref_uniprotkb", "P45843" ], [ "P25171-1", "Mutation of the hamster cell cycle gene RCC1 is complemented by the homologous genes of Drosophila and S.cerevisiae.", "The EMBO journal", "1991-05", "Ohtsubo M, Yoshida T, Seino H, Nishitani H, Clark K L, Sprague G F, Frasch M, Nishimoto T", "protein_xref_pubmed", "2022190", "protein_xref_uniprotkb", "P25171" ], [ "Q9VEI3-1", "Molecular cloning and identification of 3'-phosphoadenosine 5'-phosphosulfate transporter.", "The Journal of biological chemistry", "2003 Jul 11", "Kamiyama S, Suda T, Ueda R, Suzuki M, Okubo R, Kikuchi N, Chiba Y, Goto S, Toyoda H, Saigo K, Watanabe M, Narimatsu H, Jigami Y, Nishihara S", "protein_xref_pubmed", "12716889", "protein_xref_uniprotkb", "Q9VEI3" ], [ "Q9VEI3-1", "Slalom encodes an adenosine 3'-phosphate 5'-phosphosulfate transporter essential for development in Drosophila.", "The EMBO journal", "2003-07-15", "L\u00fcders Florian, Segawa Hiroaki, Stein David, Selva Erica M, Perrimon Norbert, Turco Salvatore J, H\u00e4cker Udo", "protein_xref_pubmed", "12853478", "protein_xref_uniprotkb", "Q9VEI3" ], [ "Q03445-1", "Glutamate receptors of Drosophila melanogaster: cloning of a kainate-selective subunit expressed in the central nervous system.", "Proceedings of the National Academy of Sciences of the United States of America", "1992-11-01", "Ultsch A, Schuster C M, Laube B, Schloss P, Schmitt B, Betz H", "protein_xref_pubmed", "1359540", "protein_xref_uniprotkb", "Q03445" ], [ "Q9VFJ3-1", "The interaction of DIAP1 with dOmi/HtrA2 regulates cell death in Drosophila.", "Cell death and differentiation", "2008 Jun", "Khan FS, Fujioka M, Datta P, Fernandes-Alnemri T, Jaynes JB, Alnemri ES", "protein_xref_pubmed", "18259196", "protein_xref_uniprotkb", "Q9VFJ3" ], [ "Q9VFJ3-1", "Drosophila Omi, a mitochondrial-localized IAP antagonist and proapoptotic serine protease.", "The EMBO journal", "2007 Jul 11", "Challa M, Malladi S, Pellock BJ, Dresnek D, Varadarajan S, Yin YW, White K, Bratton SB", "protein_xref_pubmed", "17557079", "protein_xref_uniprotkb", "Q9VFJ3" ], [ "Q9VFJ3-1", "Evolution of mitochondrial cell death pathway: Proapoptotic role of HtrA2/Omi in Drosophila.", "Biochemical and biophysical research communications", "2007 May 18", "Igaki T, Suzuki Y, Tokushige N, Aonuma H, Takahashi R, Miura M", "protein_xref_pubmed", "17397804", "protein_xref_uniprotkb", "Q9VFJ3" ], [ "P40797-1", "Drosophila melanogaster Parkin ubiquitinates peanut and septin1 as an E3 ubiquitin-protein ligase.", "Insect biochemistry and molecular biology", "2007 May", "Bae YJ, Kang SJ, Park KS", "protein_xref_pubmed", "17456438", "protein_xref_uniprotkb", "P40797" ], [ "P40797-1", "The Drosophila peanut gene is required for cytokinesis and encodes a protein similar to yeast putative bud neck filament proteins.", "Cell", "1994-05-06", "Neufeld T P, Rubin G M", "protein_xref_pubmed", "8181057", "protein_xref_uniprotkb", "P40797" ], [ "P40795-1", "A putative cell signal encoded by the folded gastrulation gene coordinates cell shape changes during Drosophila gastrulation.", "Cell", "1994-03-25", "Costa M, Wilson E T, Wieschaus E", "protein_xref_pubmed", "8137424", "protein_xref_uniprotkb", "P40795" ], [ "P40792-1", "Distinct morphogenetic functions of similar small GTPases: Drosophila Drac1 is involved in axonal outgrowth and myoblast fusion.", "Genes & development", "1994-08-01", "Luo L, Liao Y J, Jan L Y, Jan Y N", "protein_xref_pubmed", "7958857", "protein_xref_uniprotkb", "P40792" ], [ "P40792-1", "Independent recognition of Staphylococcus aureus by two receptors for phagocytosis in Drosophila.", "The Journal of biological chemistry", "2012-06-22", "Shiratsuchi Akiko, Mori Toshinobu, Sakurai Kenji, Nagaosa Kaz, Sekimizu Kazuhisa, Lee Bok Luel, Nakanishi Yoshinobu", "protein_xref_pubmed", "22547074", "protein_xref_uniprotkb", "P40792" ], [ "P40792-1", "Mechanical feedback through E-cadherin promotes direction sensing during collective cell migration.", "Cell", "2014-05-22", "Cai Danfeng, Chen Shann-Ching, Prasad Mohit, He Li, Wang Xiaobo, Choesmel-Cadamuro Valerie, Sawyer Jessica K, Danuser Gaudenz, Montell Denise J", "protein_xref_pubmed", "24855950", "protein_xref_uniprotkb", "P40792" ], [ "P40792-1", "The Drosophila Pkn protein kinase is a Rho/Rac effector target required for dorsal closure during embryogenesis.", "Genes & development", "1999 May 1", "Lu Y, Settleman J", "protein_xref_pubmed", "10323867", "protein_xref_uniprotkb", "P40792" ], [ "P40793-1", "Mbt, a Drosophila PAK protein, combines with Cdc42 to regulate photoreceptor cell morphogenesis.", "Development (Cambridge, England)", "2003 Feb", "Schneeberger D, Raabe T", "protein_xref_pubmed", "12490550", "protein_xref_uniprotkb", "P40793" ], [ "P40793-1", "Unique and Overlapping Functions of Formins Frl and DAAM During Ommatidial Rotation and Neuronal Development in Drosophila.", "Genetics", "2016 Mar", "Dollar G, Gombos R, Barnett AA, Sanchez Hernandez D, Maung SM, Mihaly J, Jenny A", "protein_xref_pubmed", "26801180", "protein_xref_uniprotkb", "P40793" ], [ "P40791-1", "D-MEF2: a MADS box transcription factor expressed in differentiating mesoderm and muscle cell lineages during Drosophila embryogenesis.", "Proceedings of the National Academy of Sciences of the United States of America", "1994-06-07", "Lilly B, Galewsky S, Firulli A B, Schulz R A, Olson E N", "protein_xref_pubmed", "8202544", "protein_xref_uniprotkb", "P40791" ], [ "P40791-1", "Identification of singles bar as a direct transcriptional target of Drosophila Myocyte enhancer factor-2 and a regulator of adult myoblast fusion.", "Developmental biology", "2015-05-15", "Brunetti Tonya M, Fremin Brayon J, Cripps Richard M", "protein_xref_pubmed", "25797154", "protein_xref_uniprotkb", "P40791" ], [ "P40791-1", "Requirement of MADS domain transcription factor D-MEF2 for muscle formation in Drosophila.", "Science (New York, N.Y.)", "1995-02-03", "Lilly B, Zhao B, Ranganayakulu G, Paterson B M, Schulz R A, Olson E N", "protein_xref_pubmed", "7839146", "protein_xref_uniprotkb", "P40791" ], [ "P40791-1", "D-mef2: a Drosophila mesoderm-specific MADS box-containing gene with a biphasic expression profile during embryogenesis.", "Proceedings of the National Academy of Sciences of the United States of America", "1994-08-02", "Nguyen H T, Bodmer R, Abmayr S M, McDermott J C, Spoerel N A", "protein_xref_pubmed", "8052612", "protein_xref_uniprotkb", "P40791" ], [ "Q9VYN8-1", "Teneurins instruct synaptic partner matching in an olfactory map.", "Nature", "2012-03-18", "Hong Weizhe, Mosca Timothy J, Luo Liqun", "protein_xref_pubmed", "22425994", "protein_xref_uniprotkb", "Q9VYN8" ], [ "Q9VYN8-1", "Trans-synaptic Teneurin signalling in neuromuscular synapse organization and target choice.", "Nature", "2012-03-18", "Mosca Timothy J, Hong Weizhe, Dani Vardhan S, Favaloro Vincenzo, Luo Liqun", "protein_xref_pubmed", "22426000", "protein_xref_uniprotkb", "Q9VYN8" ], [ "Q24568-1", "Guidance cues at the Drosophila CNS midline: identification and characterization of two Drosophila Netrin/UNC-6 homologs.", "Neuron", "1996-08", "Harris R, Sabatelli L M, Seeger M A", "protein_xref_pubmed", "8780646", "protein_xref_uniprotkb", "Q24568" ], [ "Q24568-1", "Genetic analysis of Netrin genes in Drosophila: Netrins guide CNS commissural axons and peripheral motor axons.", "Neuron", "1996-08", "Mitchell K J, Doyle J L, Serafini T, Kennedy T E, Tessier-Lavigne M, Goodman C S, Dickson B J", "protein_xref_pubmed", "8780645", "protein_xref_uniprotkb", "Q24568" ], [ "Q24568-1", "Short- and long-range repulsion by the Drosophila Unc5 netrin receptor.", "Neuron", "2001-11-20", "Keleman K, Dickson B J", "protein_xref_pubmed", "11719202", "protein_xref_uniprotkb", "Q24568" ], [ "Q7KNS3-1", "Drosophila Lis1 is required for neuroblast proliferation, dendritic elaboration and axonal transport.", "Nature cell biology", "2000-11", "Liu Z, Steward R, Luo L", "protein_xref_pubmed", "11056531", "protein_xref_uniprotkb", "Q7KNS3" ], [ "Q7KNS3-1", "Drosophila Lissencephaly-1 functions with Bic-D and dynein in oocyte determination and nuclear positioning.", "Nature cell biology", "1999-11", "Swan A, Nguyen T, Suter B", "protein_xref_pubmed", "10559989", "protein_xref_uniprotkb", "Q7KNS3" ], [ "Q7KNS3-1", "Distinct mechanisms govern the localisation of Drosophila CLIP-190 to unattached kinetochores and microtubule plus-ends.", "Journal of cell science", "2005-08-15", "Dzhindzhev Nikola S, Rogers Stephen L, Vale Ronald D, Ohkura Hiroyuki", "protein_xref_pubmed", "16105886", "protein_xref_uniprotkb", "Q7KNS3" ], [ "Q7KNS3-1", "The Drosophila Lissencephaly1 (DLis1) gene is required for nuclear migration.", "Developmental biology", "2000 Oct 1", "Lei Y, Warrior R", "protein_xref_pubmed", "10993674", "protein_xref_uniprotkb", "Q7KNS3" ], [ "Q7KNS3-1", "Live imaging of Drosophila brain neuroblasts reveals a role for Lis1/dynactin in spindle assembly and mitotic checkpoint control.", "Molecular biology of the cell", "2005-11", "Siller Karsten H, Serr Madeline, Steward Ruth, Hays Tom S, Doe Chris Q", "protein_xref_pubmed", "16107559", "protein_xref_uniprotkb", "Q7KNS3" ], [ "Q7KNS3-1", "Lis1, the Drosophila homolog of a human lissencephaly disease gene, is required for germline cell division and oocyte differentiation.", "Development (Cambridge, England)", "1999 Oct", "Liu Z, Xie T, Steward R", "protein_xref_pubmed", "10498683", "protein_xref_uniprotkb", "Q7KNS3" ], [ "Q6NR09-1", "EGFRAP encodes a new negative regulator of the EGFR acting in both normal and oncogenic EGFR/Ras-driven tissue morphogenesis.", "PLoS genetics", "2021 Aug", "Soler Beatty J, Molnar C, Luque CM, de Celis JF, Martin-Bermudo MD", "protein_xref_pubmed", "34411095", "protein_xref_uniprotkb", "Q6NR09" ], [ "Q9VCR6-1", "The Drosophila Mst ortholog, hippo, restricts growth and cell proliferation and promotes apoptosis.", "Cell", "2003 Aug 22", "Harvey KF, Pfleger CM, Hariharan IK", "protein_xref_pubmed", "12941274", "protein_xref_uniprotkb", "Q9VCR6" ], [ "Q9VCR6-1", "Shar-pei mediates cell proliferation arrest during imaginal disc growth in Drosophila.", "Development (Cambridge, England)", "2002-12", "Kango-Singh Madhuri, Nolo Riitta, Tao Chunyao, Verstreken Patrik, Hiesinger P Robin, Bellen Hugo J, Halder Georg", "protein_xref_pubmed", "12421711", "protein_xref_uniprotkb", "Q9VCR6" ], [ "Q9VCR6-1", "salvador Promotes both cell cycle exit and apoptosis in Drosophila and is mutated in human cancer cell lines.", "Cell", "2002 Aug 23", "Tapon N, Harvey KF, Bell DW, Wahrer DC, Schiripo TA, Haber D, Hariharan IK", "protein_xref_pubmed", "12202036", "protein_xref_uniprotkb", "Q9VCR6" ], [ "Q9VCR3-1", "Carrier of Wingless (Cow), a secreted heparan sulfate proteoglycan, promotes extracellular transport of Wingless.", "PloS one", "2014", "Chang YH, Sun YH", "protein_xref_pubmed", "25360738", "protein_xref_uniprotkb", "Q9VCR3" ], [ "Q8IRC7-1", "Arrowhead encodes a LIM homeodomain protein that distinguishes subsets of Drosophila imaginal cells.", "Developmental biology", "1997 Oct 1", "Curtiss J, Heilig JS", "protein_xref_pubmed", "9331336", "protein_xref_uniprotkb", "Q8IRC7" ], [ "Q9VA00-1", "Spindly, a novel protein essential for silencing the spindle assembly checkpoint, recruits dynein to the kinetochore.", "The Journal of cell biology", "2007-06-18", "Griffis Eric R, Stuurman Nico, Vale Ronald D", "protein_xref_pubmed", "17576797", "protein_xref_uniprotkb", "Q9VA00" ], [ "Q9VA00-1", "Recruitment of Mad2 to the kinetochore requires the Rod/Zw10 complex.", "Current biology : CB", "2005-05-10", "Buffin Eulalie, Lefebvre Christophe, Huang Junyong, Gagou Mary Elisabeth, Karess Roger E", "protein_xref_pubmed", "15886105", "protein_xref_uniprotkb", "Q9VA00" ], [ "Q9VA00-1", "Zwilch, a new component of the ZW10/ROD complex required for kinetochore functions.", "Molecular biology of the cell", "2003 Apr", "Williams BC, Li Z, Liu S, Williams EV, Leung G, Yen TJ, Goldberg ML", "protein_xref_pubmed", "12686595", "protein_xref_uniprotkb", "Q9VA00" ], [ "Q9V7Y2-1", "Sply regulation of sphingolipid signaling molecules is essential for Drosophila development.", "Development (Cambridge, England)", "2003-06", "Herr Deron R, Fyrst Henrik, Phan Van, Heinecke Karie, Georges Rana, Harris Greg L, Saba Julie D", "protein_xref_pubmed", "12702658", "protein_xref_uniprotkb", "Q9V7Y2" ], [ "Q9V7Y2-1", "Mutations in sphingosine-1-phosphate lyase cause nephrosis with ichthyosis and adrenal insufficiency.", "The Journal of clinical investigation", "2017 Mar 1", "Lovric S, Goncalves S, Gee HY, Oskouian B, Srinivas H, Choi WI, Shril S, Ashraf S, Tan W, Rao J, Airik M, Schapiro D, Braun DA, Sadowski CE, Widmeier E, Jobst-Schwan T, Schmidt JM, Girik V, Capitani G, Suh JH, Lachaussee N, Arrondel C, Patat J, Gribouval O, Furlano M, Boyer O, Schmitt A, Vuiblet V, Hashmi S, Wilcken R, Bernier FP, Innes AM, Parboosingh JS, Lamont RE, Midgley JP, Wright N, Majewski J, Zenker M, Schaefer F, Kuss N, Greil J, Giese T, Schwarz K, Catheline V, Schanze D, Franke I, Sznajer Y, Truant AS, Adams B, Desir J, Biemann R, Pei Y, Ars E, Lloberas N, Madrid A, Dharnidharka VR, Connolly AM, Willing MC, Cooper MA, Lifton RP, Simons M, Riezman H, Antignac C, Saba JD, Hildebrandt F", "protein_xref_pubmed", "28165339", "protein_xref_uniprotkb", "Q9V7Y2" ], [ "Q8IQQ4-1", "Gorab is a Golgi protein required for structure and duplication of Drosophila centrioles.", "Nature genetics", "2018 Jul", "Kovacs L, Chao-Chu J, Schneider S, Gottardo M, Tzolovsky G, Dzhindzhev NS, Riparbelli MG, Callaini G, Glover DM", "protein_xref_pubmed", "29892014", "protein_xref_uniprotkb", "Q8IQQ4" ], [ "Q8IQQ4-1", "The dimeric Golgi protein Gorab binds to Sas6 as a monomer to mediate centriole duplication.", "eLife", "2021 Mar 11", "Fatalska A, Stepinac E, Richter M, Kovacs L, Pietras Z, Puchinger M, Dong G, Dadlez M, Glover DM", "protein_xref_pubmed", "33704067", "protein_xref_uniprotkb", "Q8IQQ4" ], [ "P16554-1", "numb, a gene required in determination of cell fate during sensory organ formation in Drosophila embryos.", "Cell", "1989-07-28", "Uemura T, Shepherd S, Ackerman L, Jan L Y, Jan Y N", "protein_xref_pubmed", "2752427", "protein_xref_uniprotkb", "P16554" ], [ "P16554-1", "bHLH-O proteins balance the self-renewal and differentiation of Drosophila neural stem cells by regulating Earmuff expression.", "Developmental biology", "2017-11-15", "Li Xiaosu, Chen Rui, Zhu Sijun", "protein_xref_pubmed", "28899667", "protein_xref_uniprotkb", "P16554" ], [ "P16554-1", "Earmuff restricts progenitor cell potential by attenuating the competence to respond to self-renewal factors.", "Development (Cambridge, England)", "2014-03", "Janssens Derek H, Komori Hideyuki, Grbac Daniel, Chen Keng, Koe Chwee Tat, Wang Hongyan, Lee Cheng-Yu", "protein_xref_pubmed", "24550111", "protein_xref_uniprotkb", "P16554" ], [ "Q7KRY6-1", "The conserved kinase NHK-1 is essential for mitotic progression and unifying acentrosomal meiotic spindles in Drosophila melanogaster.", "The Journal of cell biology", "2005 Nov 21", "Cullen CF, Brittle AL, Ito T, Ohkura H", "protein_xref_pubmed", "16301329", "protein_xref_uniprotkb", "Q7KRY6" ], [ "Q7KRY6-1", "A histone code in meiosis: the histone kinase, NHK-1, is required for proper chromosomal architecture in Drosophila oocytes.", "Genes & development", "2005 Nov 1", "Ivanovska I, Khandan T, Ito T, Orr-Weaver TL", "protein_xref_pubmed", "16230526", "protein_xref_uniprotkb", "Q7KRY6" ], [ "Q7KRY6-1", "Binding partners of the kinase domains in Drosophila obscurin and their effect on the structure of the flight muscle.", "Journal of cell science", "2015-09-15", "Katzemich Anja, West Ryan J H, Fukuzawa Atsushi, Sweeney Sean T, Gautel Mathias, Sparrow John, Bullard Belinda", "protein_xref_pubmed", "26251439", "protein_xref_uniprotkb", "Q7KRY6" ], [ "Q7KRY6-1", "Nucleosomal histone kinase-1 phosphorylates H2A Thr 119 during mitosis in the early Drosophila embryo.", "Genes & development", "2004 Apr 15", "Aihara H, Nakagawa T, Yasui K, Ohta T, Hirose S, Dhomae N, Takio K, Kaneko M, Takeshima Y, Muramatsu M, Ito T", "protein_xref_pubmed", "15078818", "protein_xref_uniprotkb", "Q7KRY6" ], [ "Q7KRY7-1", "Cooperative regulation of cell polarity and growth by Drosophila tumor suppressors.", "Science (New York, N.Y.)", "2000-07-07", "Bilder D, Li M, Perrimon N", "protein_xref_pubmed", "10884224", "protein_xref_uniprotkb", "Q7KRY7" ], [ "Q7KRY7-1", "Scribble is essential for olfactory behavior in Drosophila melanogaster.", "Genetics", "2003-08", "Ganguly Indrani, Mackay Trudy F C, Anholt Robert R H", "protein_xref_pubmed", "12930751", "protein_xref_uniprotkb", "Q7KRY7" ], [ "Q7KRY7-1", "Localization of apical epithelial determinants by the basolateral PDZ protein Scribble.", "Nature", "2000-02-10", "Bilder D, Perrimon N", "protein_xref_pubmed", "10688207", "protein_xref_uniprotkb", "Q7KRY7" ], [ "Q7KRY7-1", "Differential expression of two scribble isoforms during Drosophila embryogenesis.", "Mechanisms of development", "2001-10", "Li M, Marhold J, Gatos A, T\u00f6r\u00f6k I, Mechler B M", "protein_xref_pubmed", "11578873", "protein_xref_uniprotkb", "Q7KRY7" ], [ "Q94913-1", "A novel circadianly expressed Drosophila melanogaster gene dependent on the period gene for its rhythmic expression.", "The EMBO journal", "1996-04-01", "Van Gelder R N, Krasnow M A", "protein_xref_pubmed", "8612586", "protein_xref_uniprotkb", "Q94913" ], [ "Q9V3Z2-1", "A signaling protease required for melanization in Drosophila affects resistance and tolerance of infections.", "PLoS biology", "2008-12-09", "Ayres Janelle S, Schneider David S", "protein_xref_pubmed", "19071960", "protein_xref_uniprotkb", "Q9V3Z2" ], [ "Q9V3Z2-1", "The serine protease Sp7 is expressed in blood cells and regulates the melanization reaction in Drosophila.", "Biochemical and biophysical research communications", "2005-12-16", "Castillejo-L\u00f3pez Casimiro, H\u00e4cker Udo", "protein_xref_pubmed", "16256951", "protein_xref_uniprotkb", "Q9V3Z2" ], [ "Q9V3Z2-1", "Two proteases defining a melanization cascade in the immune system of Drosophila.", "The Journal of biological chemistry", "2006-09-22", "Tang Huaping, Kambris Zakaria, Lemaitre Bruno, Hashimoto Carl", "protein_xref_pubmed", "16861233", "protein_xref_uniprotkb", "Q9V3Z2" ], [ "Q9V3Z2-1", "Prophenoloxidase activation is not required for survival to microbial infections in Drosophila.", "EMBO reports", "2006-02", "Leclerc Vincent, Pelte Nad\u00e8ge, El Chamy Laure, Martinelli Cosimo, Ligoxygakis Petros, Hoffmann Jules A, Reichhart Jean-Marc", "protein_xref_pubmed", "16322759", "protein_xref_uniprotkb", "Q9V3Z2" ], [ "Q9V3Z2-1", "A serpin that regulates immune melanization in the respiratory system of Drosophila.", "Developmental cell", "2008-10", "Tang Huaping, Kambris Zakaria, Lemaitre Bruno, Hashimoto Carl", "protein_xref_pubmed", "18854145", "protein_xref_uniprotkb", "Q9V3Z2" ], [ "Q9V3Z2-1", "Serine protease MP2 activates prophenoloxidase in the melanization immune response of Drosophila melanogaster.", "PloS one", "2013", "An Chunju, Zhang Mingming, Chu Yuan, Zhao Zhangwu", "protein_xref_pubmed", "24260243", "protein_xref_uniprotkb", "Q9V3Z2" ], [ "P07713-1", "Dpp gradient formation in the Drosophila wing imaginal disc.", "Cell", "2000-12-08", "Teleman A A, Cohen S M", "protein_xref_pubmed", "11136981", "protein_xref_uniprotkb", "P07713" ], [ "P07713-1", "Induction of visceral and cardiac mesoderm by ectodermal Dpp in the early Drosophila embryo.", "Nature", "1995-03-30", "Frasch M", "protein_xref_pubmed", "7700357", "protein_xref_uniprotkb", "P07713" ], [ "P07713-1", "TGF-beta/BMP superfamily members, Gbb-60A and Dpp, cooperate to provide pattern information and establish cell identity in the Drosophila wing.", "Development (Cambridge, England)", "1998-07", "Khalsa O, Yoon J W, Torres-Schumann S, Wharton K A", "protein_xref_pubmed", "9636086", "protein_xref_uniprotkb", "P07713" ], [ "P07713-1", "Regulation of pattern formation in the Drosophila hindgut by wg, hh, dpp, and en.", "Mechanisms of development", "2001-03", "Takashima S, Murakami R", "protein_xref_pubmed", "11231061", "protein_xref_uniprotkb", "P07713" ], [ "P07713-1", "sog and dpp exert opposing maternal functions to modify toll signaling and pattern the dorsoventral axis of the Drosophila embryo.", "Development (Cambridge, England)", "2000-08", "Araujo H, Bier E", "protein_xref_pubmed", "10903186", "protein_xref_uniprotkb", "P07713" ], [ "P07713-1", "DPP controls tracheal cell migration along the dorsoventral body axis of the Drosophila embryo.", "Development (Cambridge, England)", "1997-07", "Vincent S, Ruberte E, Grieder N C, Chen C K, Haerry T, Schuh R, Affolter M", "protein_xref_pubmed", "9226445", "protein_xref_uniprotkb", "P07713" ], [ "P07713-1", "The TGF beta homolog dpp and the segment polarity gene hedgehog are required for propagation of a morphogenetic wave in the Drosophila retina.", "Cell", "1993-12-03", "Heberlein U, Wolff T, Rubin G M", "protein_xref_pubmed", "8252627", "protein_xref_uniprotkb", "P07713" ], [ "P07713-1", "The decapentaplegic gene is required for dorsal-ventral patterning of the Drosophila embryo.", "Genes & development", "1987-10", "Irish V F, Gelbart W M", "protein_xref_pubmed", "3123323", "protein_xref_uniprotkb", "P07713" ], [ "P07713-1", "Dpp and Notch specify the fusion cell fate in the dorsal branches of the Drosophila trachea.", "Mechanisms of development", "1999-09", "Steneberg P, Hemph\u00e4l\u00e4 J, Samakovlis C", "protein_xref_pubmed", "10495279", "protein_xref_uniprotkb", "P07713" ] ] }, "readme": "Name\n - Fruitfly Protein Citations (UniProtKB)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2022-08-30T14:17:09.307325\n\nModified on\n - 2022-09-26T09:08:12.727097\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly Protein Citations dataset contains publication information for fruitfly [taxid:7227] UniProtKB accessions that includes PMID, journal name, date and author and title. Publications of large scale studies, and high frequency publications pertaining to genome sequencing, cDNA, chromosomes have been filtered out as per https://data.glygen.org/ln2data/releases/data/v-1.12.3/compiled/fruitfly_protein_blacklisted_pmids_uniprotkb.csv. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - publications\n - PMID\n - journal\n - citations\n - authors\n - UniProtKB\n - PubMed\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the UniProtKB accession and maps it to the UniProtKB canonical accessions. The script also filters out publications of large scale studies, and high frequency publications pertaining to DNA sequencing, cDNA, chromosomes using blacklisted PMIDs file.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: fruitfly_protein_function_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/fruitfly_protein_function_uniprotkb.csv\n Name: fruitfly_protein_ptm_annotation_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/fruitfly_protein_ptm_annotation_uniprotkb.csv\n Name: fruitfly_protein_site_annotation_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/fruitfly_protein_site_annotation_uniprotkb.csv\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_19/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_citations_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/fruitfly_protein_citations_uniprotkb.csv\n Name: fruitfly_protein_citations_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/fruitfly_protein_citations_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"2835\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"6501\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"465\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"2634\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"6421\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"6501\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"2869\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/fruitfly_protein_citations_uniprotkb.csv" }