{ "bcoid": "GLY_000607", "title": "Human Proteoform Phosphorylation Citations (UniProtKB)", "description": "The Human Proteoform Phosphorylation Citations (UniProtKB) dataset contains human [taxid:9606] publication ...", "filename": "human_proteoform_citations_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tag": [ "Phosphorylation Citations UniProtKB" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P05783-1...", "A quantitati..." ], [ "P05783-1...", "Quantitative..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P05783-1", "A quantitative atlas of mitotic phosphorylation.", "Proceedings of the National Academy of Sciences of the United States of America", "2008 Aug 5", "Dephoure N, Zhou C, Villen J, Beausoleil SA, Bakalarski CE, Elledge SJ, Gygi SP", "protein_xref_pubmed", "18669648", "protein_xref_uniprotkb", "P05783" ], [ "P05783-1", "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.", "Science signaling", "2010 Jan 12", "Olsen JV, Vermeulen M, Santamaria A, Kumar C, Miller ML, Jensen LJ, Gnad F, Cox J, Jensen TS, Nigg EA, Brunak S, Mann M", "protein_xref_pubmed", "20068231", "protein_xref_uniprotkb", "P05783" ], [ "Q92731-1", "Selective hormone-dependent repression of estrogen receptor beta by a p38-activated ErbB2/ErbB3 pathway.", "The Journal of steroid biochemistry and molecular biology", "2005 Feb", "St-Laurent V, Sanchez M, Charbonneau C, Tremblay A", "protein_xref_pubmed", "15862947", "protein_xref_uniprotkb", "Q92731" ], [ "Q8NHL6-1", "Mutational analysis of immunoreceptor tyrosine-based inhibition motifs of the Ig-like transcript 2 (CD85j) leukocyte receptor.", "Journal of immunology (Baltimore, Md. : 1950)", "2002 Apr 1", "Bellon T, Kitzig F, Sayos J, Lopez-Botet M", "protein_xref_pubmed", "11907092", "protein_xref_uniprotkb", "Q8NHL6" ], [ "P14635-1", "Cooperative phosphorylation including the activity of polo-like kinase 1 regulates the subcellular localization of cyclin B1.", "Oncogene", "2002 Nov 28", "Yuan J, Eckerdt F, Bereiter-Hahn J, Kurunci-Csacsko E, Kaufmann M, Strebhardt K", "protein_xref_pubmed", "12447691", "protein_xref_uniprotkb", "P14635" ], [ "P14635-1", "Active cyclin B1-Cdk1 first appears on centrosomes in prophase.", "Nature cell biology", "2003 Feb", "Jackman M, Lindon C, Nigg EA, Pines J", "protein_xref_pubmed", "12524548", "protein_xref_uniprotkb", "P14635" ], [ "P30203-1", "CD6 regulates T-cell responses through activation-dependent recruitment of the positive regulator SLP-76.", "Molecular and cellular biology", "2006 Sep", "Hassan NJ, Simmonds SJ, Clarkson NG, Hanrahan S, Puklavec MJ, Bomb M, Barclay AN, Brown MH", "protein_xref_pubmed", "16914752", "protein_xref_uniprotkb", "P30203" ], [ "P05783-1", "Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra.", "Journal of proteome research", "2007 Nov", "Yu LR, Zhu Z, Chan KC, Issaq HJ, Dimitrov DS, Veenstra TD", "protein_xref_pubmed", "17924679", "protein_xref_uniprotkb", "P05783" ], [ "Q96D96-1", "Identification of Thr29 as a critical phosphorylation site that activates the human proton channel Hvcn1 in leukocytes.", "The Journal of biological chemistry", "2010 Feb 19", "Musset B, Capasso M, Cherny VV, Morgan D, Bhamrah M, Dyer MJ, DeCoursey TE", "protein_xref_pubmed", "20037153", "protein_xref_uniprotkb", "Q96D96" ], [ "P05106-1", "Phosphoproteome of resting human platelets.", "Journal of proteome research", "2008 Feb", "Zahedi RP, Lewandrowski U, Wiesner J, Wortelkamp S, Moebius J, Schutz C, Walter U, Gambaryan S, Sickmann A", "protein_xref_pubmed", "18088087", "protein_xref_uniprotkb", "P05106" ], [ "P05106-1", "Integrin alpha(v)beta(3) is a pleiotrophin receptor required for pleiotrophin-induced endothelial cell migration through receptor protein tyrosine phosphatase beta/zeta.", "FASEB journal : official publication of the Federation of American Societies for Experimental Biology", "2009 May", "Mikelis C, Sfaelou E, Koutsioumpa M, Kieffer N, Papadimitriou E", "protein_xref_pubmed", "19141530", "protein_xref_uniprotkb", "P05106" ], [ "O95747-1", "Regulation of activity and localization of the WNK1 protein kinase by hyperosmotic stress.", "The Journal of cell biology", "2007 Jan 1", "Zagorska A, Pozo-Guisado E, Boudeau J, Vitari AC, Rafiqi FH, Thastrup J, Deak M, Campbell DG, Morrice NA, Prescott AR, Alessi DR", "protein_xref_pubmed", "17190791", "protein_xref_uniprotkb", "O95747" ], [ "O95747-1", "WNK1 protein kinase regulates embryonic cardiovascular development through the OSR1 signaling cascade.", "The Journal of biological chemistry", "2013-03-22", "Xie Jian, Yoon Joonho, Yang Sung-Sen, Lin Shih-Hua, Huang Chou-Long", "protein_xref_pubmed", "23386621", "protein_xref_uniprotkb", "O95747" ], [ "O95747-1", "OSR1 regulates a subset of inward rectifier potassium channels via a binding motif variant.", "Proceedings of the National Academy of Sciences of the United States of America", "2018 Apr 10", "Taylor CA 4th, An SW, Kankanamalage SG, Stippec S, Earnest S, Trivedi AT, Yang JZ, Mirzaei H, Huang CL, Cobb MH", "protein_xref_pubmed", "29581290", "protein_xref_uniprotkb", "O95747" ], [ "O95747-1", "Toward a comprehensive characterization of a human cancer cell phosphoproteome.", "Journal of proteome research", "2013 Jan 4", "Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S", "protein_xref_pubmed", "23186163", "protein_xref_uniprotkb", "O95747" ], [ "Q14674-1", "Dual inhibition of sister chromatid separation at metaphase.", "Cell", "2001 Dec 14", "Stemmann O, Zou H, Gerber SA, Gygi SP, Kirschner MW", "protein_xref_pubmed", "11747808", "protein_xref_uniprotkb", "Q14674" ], [ "Q8TAP9-1", "TTDN1 is a Plk1-interacting protein involved in maintenance of cell cycle integrity.", "Cellular and molecular life sciences : CMLS", "2007 Mar", "Zhang Y, Tian Y, Chen Q, Chen D, Zhai Z, Shu HB", "protein_xref_pubmed", "17310276", "protein_xref_uniprotkb", "Q8TAP9" ], [ "Q8TAP9-1", "A quantitative atlas of mitotic phosphorylation.", "Proceedings of the National Academy of Sciences of the United States of America", "2008 Aug 5", "Dephoure N, Zhou C, Villen J, Beausoleil SA, Bakalarski CE, Elledge SJ, Gygi SP", "protein_xref_pubmed", "18669648", "protein_xref_uniprotkb", "Q8TAP9" ], [ "P18754-1", "N-terminal alpha-methylation of RCC1 is necessary for stable chromatin association and normal mitosis.", "Nature cell biology", "2007 May", "Chen T, Muratore TL, Schaner-Tooley CE, Shabanowitz J, Hunt DF, Macara IG", "protein_xref_pubmed", "17435751", "protein_xref_uniprotkb", "P18754" ], [ "Q8N884-1", "Phosphorylation and chromatin tethering prevent cGAS activation during mitosis.", "Science (New York, N.Y.)", "2021 Mar 19", "Li T, Huang T, Du M, Chen X, Du F, Ren J, Chen ZJ", "protein_xref_pubmed", "33542149", "protein_xref_uniprotkb", "Q8N884" ], [ "Q8N884-1", "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.", "Science signaling", "2010 Jan 12", "Olsen JV, Vermeulen M, Santamaria A, Kumar C, Miller ML, Jensen LJ, Gnad F, Cox J, Jensen TS, Nigg EA, Brunak S, Mann M", "protein_xref_pubmed", "20068231", "protein_xref_uniprotkb", "Q8N884" ], [ "P26358-1", "Toward a comprehensive characterization of a human cancer cell phosphoproteome.", "Journal of proteome research", "2013 Jan 4", "Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S", "protein_xref_pubmed", "23186163", "protein_xref_uniprotkb", "P26358" ], [ "Q12888-1", "Characterisation of the sites of DNA damage-induced 53BP1 phosphorylation catalysed by ATM and ATR.", "DNA repair", "2007 Oct 1", "Jowsey P, Morrice NA, Hastie CJ, McLauchlan H, Toth R, Rouse J", "protein_xref_pubmed", "17553757", "protein_xref_uniprotkb", "Q12888" ], [ "Q12888-1", "A quantitative atlas of mitotic phosphorylation.", "Proceedings of the National Academy of Sciences of the United States of America", "2008 Aug 5", "Dephoure N, Zhou C, Villen J, Beausoleil SA, Bakalarski CE, Elledge SJ, Gygi SP", "protein_xref_pubmed", "18669648", "protein_xref_uniprotkb", "Q12888" ], [ "Q12888-1", "Toward a comprehensive characterization of a human cancer cell phosphoproteome.", "Journal of proteome research", "2013 Jan 4", "Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S", "protein_xref_pubmed", "23186163", "protein_xref_uniprotkb", "Q12888" ], [ "Q12888-1", "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.", "Science signaling", "2009 Aug 18", "Mayya V, Lundgren DH, Hwang SI, Rezaul K, Wu L, Eng JK, Rodionov V, Han DK", "protein_xref_pubmed", "19690332", "protein_xref_uniprotkb", "Q12888" ], [ "Q12888-1", "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.", "Science (New York, N.Y.)", "2007 May 25", "Matsuoka S, Ballif BA, Smogorzewska A, McDonald ER 3rd, Hurov KE, Luo J, Bakalarski CE, Zhao Z, Solimini N, Lerenthal Y, Shiloh Y, Gygi SP, Elledge SJ", "protein_xref_pubmed", "17525332", "protein_xref_uniprotkb", "Q12888" ], [ "P04406-1", "Strategy for comprehensive identification of post-translational modifications in cellular proteins, including low abundant modifications: application to glyceraldehyde-3-phosphate dehydrogenase.", "Journal of proteome research", "2008 Feb", "Seo J, Jeong J, Kim YM, Hwang N, Paek E, Lee KJ", "protein_xref_pubmed", "18183946", "protein_xref_uniprotkb", "P04406" ], [ "P04406-1", "Toward a comprehensive characterization of a human cancer cell phosphoproteome.", "Journal of proteome research", "2013 Jan 4", "Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S", "protein_xref_pubmed", "23186163", "protein_xref_uniprotkb", "P04406" ], [ "P24394-1", "Growth and gene expression are predominantly controlled by distinct regions of the human IL-4 receptor.", "Immunity", "1996 Feb", "Ryan JJ, McReynolds LJ, Keegan A, Wang LH, Garfein E, Rothman P, Nelms K, Paul WE", "protein_xref_pubmed", "8624803", "protein_xref_uniprotkb", "P24394" ], [ "P49789-1", "Fhit is a physiological target of the protein kinase Src.", "Proceedings of the National Academy of Sciences of the United States of America", "2004 Mar 16", "Pekarsky Y, Garrison PN, Palamarchuk A, Zanesi N, Aqeilan RI, Huebner K, Barnes LD, Croce CM", "protein_xref_pubmed", "15007172", "protein_xref_uniprotkb", "P49789" ], [ "P19484-1", "TFEB links autophagy to lysosomal biogenesis.", "Science (New York, N.Y.)", "2011 Jun 17", "Settembre C, Di Malta C, Polito VA, Garcia Arencibia M, Vetrini F, Erdin S, Erdin SU, Huynh T, Medina D, Colella P, Sardiello M, Rubinsztein DC, Ballabio A", "protein_xref_pubmed", "21617040", "protein_xref_uniprotkb", "P19484" ], [ "Q00613-1", "Analysis of phosphorylation of human heat shock factor 1 in cells experiencing a stress.", "BMC biochemistry", "2005 Mar 11", "Guettouche T, Boellmann F, Lane WS, Voellmy R", "protein_xref_pubmed", "15760475", "protein_xref_uniprotkb", "Q00613" ], [ "P05783-1", "Toward a comprehensive characterization of a human cancer cell phosphoproteome.", "Journal of proteome research", "2013 Jan 4", "Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S", "protein_xref_pubmed", "23186163", "protein_xref_uniprotkb", "P05783" ], [ "Q07954-1", "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.", "Journal of proteomics", "2014 Jan 16", "Bian Y, Song C, Cheng K, Dong M, Wang F, Huang J, Sun D, Wang L, Ye M, Zou H", "protein_xref_pubmed", "24275569", "protein_xref_uniprotkb", "Q07954" ], [ "O95361-1", "TRIMs and Galectins Globally Cooperate and TRIM16 and Galectin-3 Co-direct Autophagy in Endomembrane Damage Homeostasis.", "Developmental cell", "2016 Oct 10", "Chauhan S, Kumar S, Jain A, Ponpuak M, Mudd MH, Kimura T, Choi SW, Peters R, Mandell M, Bruun JA, Johansen T, Deretic V", "protein_xref_pubmed", "27693506", "protein_xref_uniprotkb", "O95361" ], [ "Q04760-1", "Phosphorylation on Thr-106 and NO-modification of glyoxalase I suppress the TNF-induced transcriptional activity of NF-kappaB.", "Molecular and cellular biochemistry", "2009 May", "de Hemptinne V, Rondas D, Toepoel M, Vancompernolle K", "protein_xref_pubmed", "19199007", "protein_xref_uniprotkb", "Q04760" ], [ "Q8TB45-1", "DEPTOR is an mTOR inhibitor frequently overexpressed in multiple myeloma cells and required for their survival.", "Cell", "2009 May 29", "Peterson TR, Laplante M, Thoreen CC, Sancak Y, Kang SA, Kuehl WM, Gray NS, Sabatini DM", "protein_xref_pubmed", "19446321", "protein_xref_uniprotkb", "Q8TB45" ], [ "P15391-1", "CD19 of B cells as a surrogate kinase insert region to bind phosphatidylinositol 3-kinase.", "Science (New York, N.Y.)", "1993 May 14", "Tuveson DA, Carter RH, Soltoff SP, Fearon DT", "protein_xref_pubmed", "7684160", "protein_xref_uniprotkb", "P15391" ], [ "P22626-1", "Toward a comprehensive characterization of a human cancer cell phosphoproteome.", "Journal of proteome research", "2013 Jan 4", "Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S", "protein_xref_pubmed", "23186163", "protein_xref_uniprotkb", "P22626" ], [ "P22626-1", "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.", "Science signaling", "2011 Mar 15", "Rigbolt KT, Prokhorova TA, Akimov V, Henningsen J, Johansen PT, Kratchmarova I, Kassem M, Mann M, Olsen JV, Blagoev B", "protein_xref_pubmed", "21406692", "protein_xref_uniprotkb", "P22626" ], [ "Q15036-1", "A quantitative atlas of mitotic phosphorylation.", "Proceedings of the National Academy of Sciences of the United States of America", "2008 Aug 5", "Dephoure N, Zhou C, Villen J, Beausoleil SA, Bakalarski CE, Elledge SJ, Gygi SP", "protein_xref_pubmed", "18669648", "protein_xref_uniprotkb", "Q15036" ], [ "Q15036-1", "Toward a comprehensive characterization of a human cancer cell phosphoproteome.", "Journal of proteome research", "2013 Jan 4", "Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S", "protein_xref_pubmed", "23186163", "protein_xref_uniprotkb", "Q15036" ], [ "Q15036-1", "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.", "Science signaling", "2011 Mar 15", "Rigbolt KT, Prokhorova TA, Akimov V, Henningsen J, Johansen PT, Kratchmarova I, Kassem M, Mann M, Olsen JV, Blagoev B", "protein_xref_pubmed", "21406692", "protein_xref_uniprotkb", "Q15036" ], [ "Q5T1C6-1", "Heat shock protein 70-mediated sensitization of cells to apoptosis by Carboxyl-Terminal Modulator Protein.", "BMC cell biology", "2009 Jul 15", "Piao L, Li Y, Yang KJ, Park KA, Byun HS, Won M, Hong J, Kim JL, Kweon GR, Hur GM, Seok JH, Cho JY, Chun T, Hess D, Sack R, Maira SM, Brazil DP, Hemmings BA, Park J", "protein_xref_pubmed", "19604401", "protein_xref_uniprotkb", "Q5T1C6" ], [ "Q00536-1", "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.", "Science signaling", "2011 Mar 15", "Rigbolt KT, Prokhorova TA, Akimov V, Henningsen J, Johansen PT, Kratchmarova I, Kassem M, Mann M, Olsen JV, Blagoev B", "protein_xref_pubmed", "21406692", "protein_xref_uniprotkb", "Q00536" ], [ "Q00536-1", "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.", "Science signaling", "2010 Jan 12", "Olsen JV, Vermeulen M, Santamaria A, Kumar C, Miller ML, Jensen LJ, Gnad F, Cox J, Jensen TS, Nigg EA, Brunak S, Mann M", "protein_xref_pubmed", "20068231", "protein_xref_uniprotkb", "Q00536" ], [ "Q00536-1", "A quantitative atlas of mitotic phosphorylation.", "Proceedings of the National Academy of Sciences of the United States of America", "2008 Aug 5", "Dephoure N, Zhou C, Villen J, Beausoleil SA, Bakalarski CE, Elledge SJ, Gygi SP", "protein_xref_pubmed", "18669648", "protein_xref_uniprotkb", "Q00536" ], [ "Q00536-1", "Toward a comprehensive characterization of a human cancer cell phosphoproteome.", "Journal of proteome research", "2013 Jan 4", "Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S", "protein_xref_pubmed", "23186163", "protein_xref_uniprotkb", "Q00536" ], [ "Q8N370-1", "A quantitative atlas of mitotic phosphorylation.", "Proceedings of the National Academy of Sciences of the United States of America", "2008 Aug 5", "Dephoure N, Zhou C, Villen J, Beausoleil SA, Bakalarski CE, Elledge SJ, Gygi SP", "protein_xref_pubmed", "18669648", "protein_xref_uniprotkb", "Q8N370" ], [ "Q8N370-1", "Anticipation of food intake induces phosphorylation switch to regulate basolateral amino acid transporter LAT4 (SLC43A2) function.", "The Journal of physiology", "2019 Jan", "Oparija L, Rajendran A, Poncet N, Verrey F", "protein_xref_pubmed", "30379325", "protein_xref_uniprotkb", "Q8N370" ], [ "Q7Z698-1", "Spred-2 steady-state levels are regulated by phosphorylation and Cbl-mediated ubiquitination.", "Biochemical and biophysical research communications", "2006 Dec 29", "Lock P, I ST, Straffon AF, Schieb H, Hovens CM, Stylli SS", "protein_xref_pubmed", "17094949", "protein_xref_uniprotkb", "Q7Z698" ], [ "Q969H0-1", "Negative regulation of the stability and tumor suppressor function of Fbw7 by the Pin1 prolyl isomerase.", "Molecular cell", "2012 Jun 29", "Min SH, Lau AW, Lee TH, Inuzuka H, Wei S, Huang P, Shaik S, Lee DY, Finn G, Balastik M, Chen CH, Luo M, Tron AE, Decaprio JA, Zhou XZ, Wei W, Lu KP", "protein_xref_pubmed", "22608923", "protein_xref_uniprotkb", "Q969H0" ], [ "P33316-3", "Toward a comprehensive characterization of a human cancer cell phosphoproteome.", "Journal of proteome research", "2013 Jan 4", "Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S", "protein_xref_pubmed", "23186163", "protein_xref_uniprotkb", "P33316" ], [ "Q86WV1-1", "SKAP55 coupled with CD45 positively regulates T-cell receptor-mediated gene transcription.", "Molecular and cellular biology", "2002 Apr", "Wu L, Fu J, Shen SH", "protein_xref_pubmed", "11909961", "protein_xref_uniprotkb", "Q86WV1" ], [ "P28223-1", "Quantitative phosphoproteomics unravels biased phosphorylation of serotonin 2A receptor at Ser280 by hallucinogenic versus nonhallucinogenic agonists.", "Molecular & cellular proteomics : MCP", "2014 May", "Karaki S, Becamel C, Murat S, Mannoury la Cour C, Millan MJ, Prezeau L, Bockaert J, Marin P, Vandermoere F", "protein_xref_pubmed", "24637012", "protein_xref_uniprotkb", "P28223" ], [ "P14598-1", "The phosphorylation of the respiratory burst oxidase component p47phox during neutrophil activation. Phosphorylation of sites recognized by protein kinase C and by proline-directed kinases.", "The Journal of biological chemistry", "1994 Sep 23", "el Benna J, Faust LP, Babior BM", "protein_xref_pubmed", "8089108", "protein_xref_uniprotkb", "P14598" ], [ "Q86U44-1", "Interactions, localization, and phosphorylation of the m(6)A generating METTL3-METTL14-WTAP complex.", "RNA (New York, N.Y.)", "2018 Apr", "Scholler E, Weichmann F, Treiber T, Ringle S, Treiber N, Flatley A, Feederle R, Bruckmann A, Meister G", "protein_xref_pubmed", "29348140", "protein_xref_uniprotkb", "Q86U44" ], [ "Q86U44-1", "A quantitative atlas of mitotic phosphorylation.", "Proceedings of the National Academy of Sciences of the United States of America", "2008 Aug 5", "Dephoure N, Zhou C, Villen J, Beausoleil SA, Bakalarski CE, Elledge SJ, Gygi SP", "protein_xref_pubmed", "18669648", "protein_xref_uniprotkb", "Q86U44" ], [ "Q86U44-1", "Toward a comprehensive characterization of a human cancer cell phosphoproteome.", "Journal of proteome research", "2013 Jan 4", "Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S", "protein_xref_pubmed", "23186163", "protein_xref_uniprotkb", "Q86U44" ], [ "P09874-1", "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.", "Science signaling", "2010 Jan 12", "Olsen JV, Vermeulen M, Santamaria A, Kumar C, Miller ML, Jensen LJ, Gnad F, Cox J, Jensen TS, Nigg EA, Brunak S, Mann M", "protein_xref_pubmed", "20068231", "protein_xref_uniprotkb", "P09874" ], [ "P09874-1", "Toward a comprehensive characterization of a human cancer cell phosphoproteome.", "Journal of proteome research", "2013 Jan 4", "Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S", "protein_xref_pubmed", "23186163", "protein_xref_uniprotkb", "P09874" ], [ "P07237-1", "Phosphorylation switches protein disulfide isomerase activity to maintain proteostasis and attenuate ER stress.", "The EMBO journal", "2020 May 18", "Yu J, Li T, Liu Y, Wang X, Zhang J, Wang X, Shi G, Lou J, Wang L, Wang CC, Wang L", "protein_xref_pubmed", "32149426", "protein_xref_uniprotkb", "P07237" ], [ "Q12888-1", "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.", "Science signaling", "2010 Jan 12", "Olsen JV, Vermeulen M, Santamaria A, Kumar C, Miller ML, Jensen LJ, Gnad F, Cox J, Jensen TS, Nigg EA, Brunak S, Mann M", "protein_xref_pubmed", "20068231", "protein_xref_uniprotkb", "Q12888" ], [ "P14859-1", "Mitotic phosphorylation of the Oct-1 homeodomain and regulation of Oct-1 DNA binding activity.", "Science (New York, N.Y.)", "1991 Dec 20", "Segil N, Roberts SB, Heintz N", "protein_xref_pubmed", "1684878", "protein_xref_uniprotkb", "P14859" ], [ "Q13163-1", "Components of a new human protein kinase signal transduction pathway.", "The Journal of biological chemistry", "1995 May 26", "Zhou G, Bao ZQ, Dixon JE", "protein_xref_pubmed", "7759517", "protein_xref_uniprotkb", "Q13163" ], [ "Q13163-1", "Large-scale proteomics analysis of the human kinome.", "Molecular & cellular proteomics : MCP", "2009 Jul", "Oppermann FS, Gnad F, Olsen JV, Hornberger R, Greff Z, Keri G, Mann M, Daub H", "protein_xref_pubmed", "19369195", "protein_xref_uniprotkb", "Q13163" ], [ "Q96GN5-1", "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.", "Science signaling", "2010 Jan 12", "Olsen JV, Vermeulen M, Santamaria A, Kumar C, Miller ML, Jensen LJ, Gnad F, Cox J, Jensen TS, Nigg EA, Brunak S, Mann M", "protein_xref_pubmed", "20068231", "protein_xref_uniprotkb", "Q96GN5" ], [ "Q96GN5-1", "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.", "Science signaling", "2011 Mar 15", "Rigbolt KT, Prokhorova TA, Akimov V, Henningsen J, Johansen PT, Kratchmarova I, Kassem M, Mann M, Olsen JV, Blagoev B", "protein_xref_pubmed", "21406692", "protein_xref_uniprotkb", "Q96GN5" ], [ "Q96GN5-1", "Affinity switching of the LEDGF/p75 IBD interactome is governed by kinase-dependent phosphorylation.", "Proceedings of the National Academy of Sciences of the United States of America", "2018 Jul 24", "Sharma S, Cermakova K, De Rijck J, Demeulemeester J, Fabry M, El Ashkar S, Van Belle S, Lepsik M, Tesina P, Duchoslav V, Novak P, Hubalek M, Srb P, Christ F, Rezacova P, Hodges HC, Debyser Z, Veverka V", "protein_xref_pubmed", "29997176", "protein_xref_uniprotkb", "Q96GN5" ], [ "Q5T481-1", "Proteome-wide quantitative RNA-interactome capture identifies phosphorylation sites with regulatory potential in RBM20.", "Molecular cell", "2022 Jun 2", "Vieira-Vieira CH, Dauksaite V, Sporbert A, Gotthardt M, Selbach M", "protein_xref_pubmed", "35427468", "protein_xref_uniprotkb", "Q5T481" ], [ "O95297-1", "Dissecting the interaction of SHP-2 with PZR, an immunoglobulin family protein containing immunoreceptor tyrosine-based inhibitory motifs.", "The Journal of biological chemistry", "2000 Feb 25", "Zhao R, Zhao ZJ", "protein_xref_pubmed", "10681522", "protein_xref_uniprotkb", "O95297" ], [ "O95297-1", "A quantitative atlas of mitotic phosphorylation.", "Proceedings of the National Academy of Sciences of the United States of America", "2008 Aug 5", "Dephoure N, Zhou C, Villen J, Beausoleil SA, Bakalarski CE, Elledge SJ, Gygi SP", "protein_xref_pubmed", "18669648", "protein_xref_uniprotkb", "O95297" ], [ "O95297-1", "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.", "Science signaling", "2010 Jan 12", "Olsen JV, Vermeulen M, Santamaria A, Kumar C, Miller ML, Jensen LJ, Gnad F, Cox J, Jensen TS, Nigg EA, Brunak S, Mann M", "protein_xref_pubmed", "20068231", "protein_xref_uniprotkb", "O95297" ], [ "O95297-1", "Toward a comprehensive characterization of a human cancer cell phosphoproteome.", "Journal of proteome research", "2013 Jan 4", "Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S", "protein_xref_pubmed", "23186163", "protein_xref_uniprotkb", "O95297" ], [ "O95297-1", "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.", "Science signaling", "2009 Aug 18", "Mayya V, Lundgren DH, Hwang SI, Rezaul K, Wu L, Eng JK, Rodionov V, Han DK", "protein_xref_pubmed", "19690332", "protein_xref_uniprotkb", "O95297" ], [ "O96020-1", "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle.", "Molecular cell", "2008 Aug 8", "Daub H, Olsen JV, Bairlein M, Gnad F, Oppermann FS, Korner R, Greff Z, Keri G, Stemmann O, Mann M", "protein_xref_pubmed", "18691976", "protein_xref_uniprotkb", "O96020" ], [ "Q01804-1", "OTUD4 Is a Phospho-Activated K63 Deubiquitinase that Regulates MyD88-Dependent Signaling.", "Molecular cell", "2018 Feb 1", "Zhao Y, Mudge MC, Soll JM, Rodrigues RB, Byrum AK, Schwarzkopf EA, Bradstreet TR, Gygi SP, Edelson BT, Mosammaparast N", "protein_xref_pubmed", "29395066", "protein_xref_uniprotkb", "Q01804" ], [ "Q8WUA7-1", "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.", "Journal of proteomics", "2014 Jan 16", "Bian Y, Song C, Cheng K, Dong M, Wang F, Huang J, Sun D, Wang L, Ye M, Zou H", "protein_xref_pubmed", "24275569", "protein_xref_uniprotkb", "Q8WUA7" ], [ "Q04759-1", "Critical role of novel Thr-219 autophosphorylation for the cellular function of PKCtheta in T lymphocytes.", "The EMBO journal", "2005 Nov 16", "Thuille N, Heit I, Fresser F, Krumbock N, Bauer B, Leuthaeusser S, Dammeier S, Graham C, Copeland TD, Shaw S, Baier G", "protein_xref_pubmed", "16252004", "protein_xref_uniprotkb", "Q04759" ], [ "Q04759-1", "Large-scale proteomics analysis of the human kinome.", "Molecular & cellular proteomics : MCP", "2009 Jul", "Oppermann FS, Gnad F, Olsen JV, Hornberger R, Greff Z, Keri G, Mann M, Daub H", "protein_xref_pubmed", "19369195", "protein_xref_uniprotkb", "Q04759" ], [ "Q04759-1", "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle.", "Molecular cell", "2008 Aug 8", "Daub H, Olsen JV, Bairlein M, Gnad F, Oppermann FS, Korner R, Greff Z, Keri G, Stemmann O, Mann M", "protein_xref_pubmed", "18691976", "protein_xref_uniprotkb", "Q04759" ], [ "Q04759-1", "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.", "Journal of proteomics", "2014 Jan 16", "Bian Y, Song C, Cheng K, Dong M, Wang F, Huang J, Sun D, Wang L, Ye M, Zou H", "protein_xref_pubmed", "24275569", "protein_xref_uniprotkb", "Q04759" ], [ "Q04759-1", "Toward a comprehensive characterization of a human cancer cell phosphoproteome.", "Journal of proteome research", "2013 Jan 4", "Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S", "protein_xref_pubmed", "23186163", "protein_xref_uniprotkb", "Q04759" ] ] }, "readme": "Name\n - Human Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2021-10-15T08:00:04.645468\n\nModified on\n - 2024-01-03T19:10:25\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Human Proteoform Phosphorylation Citations (UniProtKB) dataset contains human [taxid:9606] publication information of glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n Keywords\n - publications\n - PMID\n - journal\n - citations\n - authors\n - UniProtKB\n - PubMed\n - Phosphorylation\n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_proteoform_phosphorylation_sites_uniprotkb.csv\n Output Subdomain\n Name: human_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n Name: human_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"6121\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"912\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"150\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"768\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"912\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"912\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"6122\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/human_proteoform_citations_phosphorylation_sites_uniprotkb.csv" }