{ "bcoid": "GLY_000587", "title": "GlyTouCan masterlist", "description": "The dataset provides all glycans (identified by GlyTouCan accession) from GlyTouCan. Source database: ...", "filename": "glycan_glytoucanidlist.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tag": [ "Properties" ], "status": [ "Reviewed" ], "file_type": [ "csv" ], "scope": [ "internal" ], "species": [ "Sus scrofa", "Rattus", "Homo sapiens", "Mus musculus", "Saccharomyces cerevisiae", "Drosophila melanogaster", "Rattus norvegicus", "Severe acute respiratory syndrome coronavirus 2", "Sus scrofa domesticus", "Dictyostelium discoideum", "Hepatitis C virus (isolate H)", "Severe acute respiratory syndrome-related coronavirus", "Hepacivirus C" ] }, "minitable": { "content": [ [ "G00000CV...", "current..." ], [ "G00000RJ...", "current..." ] ], "headers": [ "glytoucan_ac...", "status..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "status" }, { "type": "string", "label": "replacement_ac" } ], [ "G00000CV", "current", "" ], [ "G00000RJ", "current", "" ], [ "G00001LE", "current", "" ], [ "G00001NT", "current", "" ], [ "G00001QT", "current", "" ], [ "G00001WB", "current", "" ], [ "G00002CF", "current", "" ], [ "G00002XH", "current", "" ], [ "G00003VQ", "current", "" ], [ "G00004LW", "current", "" ], [ "G00004NM", "current", "" ], [ "G00004OY", "current", "" ], [ "G00004QQ", "current", "" ], [ "G00005DE", "current", "" ], [ "G00005IV", "current", "" ], [ "G00006HE", "current", "" ], [ "G00006KL", "current", "" ], [ "G00006RP", "current", "" ], [ "G00006SB", "current", "" ], [ "G00008BG", "current", "" ], [ "G00009BX", "current", "" ], [ "G00009CI", "current", "" ], [ "G00009HC", "current", "" ], [ "G00010DR", "current", "" ], [ "G00010XO", "current", "" ], [ "G00012JB", "current", "" ], [ "G00012MO", "current", "" ], [ "G00012RZ", "current", "" ], [ "G00013MO", "current", "" ], [ "G00014MO", "current", "" ], [ "G00015MO", "current", "" ], [ "G00016JM", "current", "" ], [ "G00016MO", "current", "" ], [ "G00017DE", "current", "" ], [ "G00017IP", "current", "" ], [ "G00017MO", "current", "" ], [ "G00018MO", "current", "" ], [ "G00018XX", "current", "" ], [ "G00019BE", "current", "" ], [ "G00019MO", "current", "" ], [ "G00019RN", "current", "" ], [ "G00019UX", "current", "" ], [ "G00020HN", "current", "" ], [ "G00020KY", "current", "" ], [ "G00020MO", "current", "" ], [ "G00021MO", "current", "" ], [ "G00021QP", "current", "" ], [ "G00021XE", "current", "" ], [ "G00021YS", "current", "" ], [ "G00022MO", "current", "" ], [ "G00023EZ", "current", "" ], [ "G00023LR", "current", "" ], [ "G00023MO", "current", "" ], [ "G00023PO", "current", "" ], [ "G00024EC", "current", "" ], [ "G00024IQ", "current", "" ], [ "G00024MO", "current", "" ], [ "G00025AJ", "current", "" ], [ "G00025HU", "current", "" ], [ "G00025LQ", "current", "" ], [ "G00025MO", "current", "" ], [ "G00025UZ", "current", "" ], [ "G00025XS", "current", "" ], [ "G00025YC", "current", "" ], [ "G00026KW", "current", "" ], [ "G00026MO", "current", "" ], [ "G00027DD", "current", "" ], [ "G00027JG", "current", "" ], [ "G00027MO", "current", "" ], [ "G00027PJ", "current", "" ], [ "G00027SX", "current", "" ], [ "G00028MO", "current", "" ], [ "G00028NO", "current", "" ], [ "G00028NV", "current", "" ], [ "G00028QS", "current", "" ], [ "G00028ZX", "current", "" ], [ "G00029FA", "current", "" ], [ "G00029MO", "current", "" ], [ "G00029YH", "current", "" ], [ "G00030EM", "current", "" ], [ "G00030HB", "current", "" ], [ "G00030MO", "current", "" ], [ "G00030SF", "current", "" ], [ "G00030VN", "current", "" ] ] }, "readme": "Name\n - GlyTouCan masterlist\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2021-08-18T13:48:00.328077\n\nModified on\n - 2022-09-26T09:08:12.754125\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides all glycans (identified by GlyTouCan accession) from GlyTouCan. Source database: https://glytoucan.org/. \n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Properties\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to process the dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glytoucan_allacc.txt\n URI: https:/data.glygen.org/ln2downloads/glycan_list/02_20_2024/glytoucan_allacc.txt\n Name: glytoucan_archived.txt\n URI: https:/data.glygen.org/ln2downloads/glycan_list/02_20_2024/glytoucan_archived.txt\n Name: glytoucan_replaced.txt\n URI: https:/data.glygen.org/ln2downloads/glycan_list/02_20_2024/glytoucan_replaced.txt\n Output Subdomain\n Name: glycan_glytoucanidlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_glytoucanidlist.csv\n Name: glycan_glytoucanidlist.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_glytoucanidlist.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"226943\"\n Name: \"status\"\n Description: \"Status of the protein record in UniProtKB database that can be reviewed for UniProtKB/Swiss-Prot entry or unreviewed for UniProtKB/TrEMBL entry\"\n Unique Values: \"3\"\n Name: \"replacement_ac\"\n Description: \"\"\n Unique Values: \"843\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/glycan_glytoucanidlist.csv" }