{ "bcoid": "GLY_000556", "title": "Glycan Citations (GlycoMotif)", "description": "The dataset provides citations for the associated glycan (GlyTouCan Accession) from GlycoMotif (https://glycomotif.glyomics.org/). ...", "filename": "glycan_citations_motif.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tag": [ "Citations(GlycoMotif)" ], "status": [ "Reviewed" ], "file_type": [ "csv" ], "scope": [ "internal" ], "species": [ "Homo sapiens", "Mus musculus", "Sus scrofa", "Rattus", "Drosophila melanogaster", "Sus scrofa domesticus", "Rattus norvegicus", "Severe acute respiratory syndrome coronavirus 2", "Saccharomyces cerevisiae" ] }, "minitable": { "content": [ [ "G00055MO...", "Specific bin..." ], [ "G00055MO...", "Immunohistoc..." ] ], "headers": [ "glytoucan_ac...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "G00055MO", "Specific binding of anti-N-acetyllactosamine monoclonal antibody 1B2 to acute myeloid leukaemia cells.", "European journal of cancer (Oxford, England : 1990)", "1992", "Campos L, Portoukalian J, Bonnier S, Shi ZH, Calmard-Oriol P, Treille D, Guyotat D", "glycan_xref_pubmed", "1567687", "glycan_xref_motif", "GGM.000001" ], [ "G00055MO", "Immunohistochemical localization of two monoclonal antibody-defined carbohydrate antigens during early murine embryogenesis.", "Developmental biology", "1983 Dec", "Fenderson BA, Hahnel AC, Eddy EM", "glycan_xref_pubmed", "6653876", "glycan_xref_motif", "GGM.000001" ], [ "G00055MO", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000001" ], [ "G00058MO", "Characterization of a blood group I-active ganglioside. Structural requirements for I and i specificities.", "The Journal of biological chemistry", "1979 May 10", "Watanabe K, Hakomori SI, Childs RA, Feizi T", "glycan_xref_pubmed", "107170", "glycan_xref_motif", "GGM.000002" ], [ "G00058MO", "Human IgG3 monoclonal antibody directed to an unbranched repeating type 2 chain (Gal beta 1----4GlcNAc beta 1----3Gal beta 1----4GlcNAc beta 1----3Gal beta 1----R) which is highly expressed in colonic and hepatocellular carcinoma.", "Cancer research", "1989 Oct 15", "Miyake M, Kohno N, Nudelman ED, Hakomori S", "glycan_xref_pubmed", "2551493", "glycan_xref_motif", "GGM.000002" ], [ "G00058MO", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000002" ], [ "G61459JW", "Two monoclonal anticarbohydrate antibodies directed to glycosphingolipids with a lacto-N-glycosyl type II chain.", "The Journal of biological chemistry", "1981 Nov 10", "Young WW Jr, Portoukalian J, Hakomori S", "glycan_xref_pubmed", "7287743", "glycan_xref_motif", "GGM.000036" ], [ "G61459JW", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000036" ], [ "G24432YB", "Human natural anti-alpha-galactosyl IgG. II. The specific recognition of alpha (1----3)-linked galactose residues.", "The Journal of experimental medicine", "1985 Aug 1", "Galili U, Macher BA, Buehler J, Shohet SB", "glycan_xref_pubmed", "2410529", "glycan_xref_motif", "GGM.000015" ], [ "G24432YB", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000015" ], [ "G57710SU", "Monoclonal antibodies to glycolipids of the isoglobo-series detect tumor-associated antigens in rats.", "International journal of cancer", "1989 Feb 15", "Brodin NT, Thurin J, Karlsson KA, Martensson S, Sjogren HO", "glycan_xref_pubmed", "2465279", "glycan_xref_motif", "GGM.000071" ], [ "G57710SU", "Novel isoglobo-neolacto-series hybrid glycolipid detected by a monoclonal antibody is a rat colon tumor-associated antigen.", "Biochimica et biophysica acta", "1989 Apr 26", "Thurin J, Brodin T, Bechtel B, Jovall PA, Karlsson H, Stromberg N, Teneberg S, Sjogren HO, Karlsson KA", "glycan_xref_pubmed", "2713378", "glycan_xref_motif", "GGM.000071" ], [ "G57710SU", "Glycolipids of rat glomerular mesangial cells: antibody against the cells reacts specifically to isoglobotetraosylceramide.", "The Japanese journal of experimental medicine", "1988 Feb", "Ohyama K, Hirabayashi Y, Mizoguchi K, Nagase M, Honda N, Nishimura K", "glycan_xref_pubmed", "3379797", "glycan_xref_motif", "GGM.000071" ], [ "G57710SU", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000071" ], [ "G57710SU", "On the structure of cytolipin R, a ceramide tetrahexoside hapten from rat lymphosarcoma.", "Journal of lipid research", "1972 Jul", "Laine R, Sweeley CC, Li YT, Kisic A, Rapport MM", "glycan_xref_pubmed", "5068000", "glycan_xref_motif", "GGM.000083" ], [ "G57710SU", "Cytolipin R: A pure lipid hapten isolated from rat lymphosarcoma.", "Biochimica et biophysica acta", "1967 Apr 4", "Rapport MM, Schneider H, Graf L", "glycan_xref_pubmed", "6072378", "glycan_xref_motif", "GGM.000083" ], [ "G01187XC", "Monoclonal antibody defining a stage-specific mouse embryonic antigen (SSEA-1).", "Proceedings of the National Academy of Sciences of the United States of America", "1978 Nov", "Solter D, Knowles BB", "glycan_xref_pubmed", "281705", "glycan_xref_motif", "GGM.000018" ], [ "G01187XC", "Stage-specific embryonic antigen involves alpha 1 goes to 3 fucosylated type 2 blood group chains.", "Nature", "1981 Jul 9", "Gooi HC, Feizi T, Kapadia A, Knowles BB, Solter D, Evans MJ", "glycan_xref_pubmed", "6165896", "glycan_xref_motif", "GGM.000018" ], [ "G01187XC", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000018" ], [ "G00054MO", "Characterization of sialosylated Lewisx as a new tumor-associated antigen.", "Cancer research", "1984 Nov", "Fukushima K, Hirota M, Terasaki PI, Wakisaka A, Togashi H, Chia D, Suyama N, Fukushi Y, Nudelman E, Hakomori S", "glycan_xref_pubmed", "6386148", "glycan_xref_motif", "GGM.000022" ], [ "G00054MO", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000022" ], [ "G10203DW", "Characterization of the carbohydrate binding specificity of the leukoagglutinating lectin from Maackia amurensis. Comparison with other sialic acid-specific lectins.", "The Journal of biological chemistry", "1991 Jan 5", "Knibbs RN, Goldstein IJ, Ratcliffe RM, Shibuya N", "glycan_xref_pubmed", "1985926", "glycan_xref_motif", "GGM.000034" ], [ "G10203DW", "The immobilized leukoagglutinin from the seeds of Maackia amurensis binds with high affinity to complex-type Asn-linked oligosaccharides containing terminal sialic acid-linked alpha-2,3 to penultimate galactose residues.", "The Journal of biological chemistry", "1988 Apr 5", "Wang WC, Cummings RD", "glycan_xref_pubmed", "3350806", "glycan_xref_motif", "GGM.000034" ], [ "G10203DW", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000034" ], [ "G10203DW", "Siglec-mediated regulation of immune cell function in disease.", "Nature reviews. Immunology", "2014 Oct", "Macauley MS, Crocker PR, Paulson JC", "glycan_xref_pubmed", "25234143", "glycan_xref_motif", "GGM.000034" ], [ "G31736BK", "Mice infected with Schistosoma mansoni generate antibodies to LacdiNAc (GalNAc beta 1-->4GlcNAc) determinants.", "Glycobiology", "1999 Oct", "Nyame AK, Leppanen AM, DeBose-Boyd R, Cummings RD", "glycan_xref_pubmed", "10521539", "glycan_xref_motif", "GGM.000016" ], [ "G31736BK", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000016" ], [ "G18464VS", "The mannose/N-acetylgalactosamine-4-SO4 receptor displays greater specificity for multivalent than monovalent ligands.", "The Journal of biological chemistry", "2001 May 18", "Roseman DS, Baenziger JU", "glycan_xref_pubmed", "11279168", "glycan_xref_motif", "GGM.000049" ], [ "G18464VS", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000049" ], [ "G00031MO", "Blood group MN antigens and precursors in normal and malignant human breast glandular tissue.", "Journal of the National Cancer Institute", "1975 Feb", "Springer GF, Desai PR, Banatwala I", "glycan_xref_pubmed", "163330", "glycan_xref_motif", "GGM.000009" ], [ "G00031MO", "Monoclonal antibodies and synthetic tumor-associated glycoconjugates in the study of the expression of Thomsen-Friedenreich-like and Tn-like antigens on human cancers.", "Journal of the National Cancer Institute", "1987 Mar", "Longenecker BM, Willans DJ, MacLean GD, Selvaraj S, Suresh MR, Noujaim AA", "glycan_xref_pubmed", "3469463", "glycan_xref_motif", "GGM.000009" ], [ "G00031MO", "[On the isolation of mucoids containing neuraminic acid from human erythrocyte stroma, a contribution to the chemistry of agglutinogens].", "Hoppe-Seyler's Zeitschrift fur physiologische Chemie", "1960", "KLENK E, UHLENBRUCK G", "glycan_xref_pubmed", "13756766", "glycan_xref_motif", "GGM.000009" ], [ "G00031MO", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000009" ], [ "G00056MO", "Purification of anti-Lec antibodies with specificity for beta DGal(1 replaced by 3)beta DGlcNAcO- using a synthetic immunoadsorbent.", "Vox sanguinis", "1982", "Le Pendu J, Lemieux RU, Oriol R", "glycan_xref_pubmed", "6182692", "glycan_xref_motif", "GGM.000005" ], [ "G00056MO", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000005" ], [ "G00047MO", "Characterization of monoclonal antibodies specific for the Lewis a human blood group determinant.", "The Journal of biological chemistry", "1983 Apr 25", "Young WW Jr, Johnson HS, Tamura Y, Karlsson KA, Larson G, Parker JM, Khare DP, Spohr U, Baker DA, Hindsgaul O, Lemieux RU", "glycan_xref_pubmed", "6833281", "glycan_xref_motif", "GGM.000020" ], [ "G00047MO", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000020" ], [ "G39211DH", "Monoclonal antibodies directed against the human Leb blood group antigen.", "The Journal of biological chemistry", "1981 Dec 25", "Brockhaus M, Magnani JL, Blaszczyk M, Steplewski Z, Koprowski H, Karlsson KA, Larson G, Ginsburg V", "glycan_xref_pubmed", "7309759", "glycan_xref_motif", "GGM.000021" ], [ "G39211DH", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000021" ], [ "G40696TO", "Blood group A determinants with mono- and difucosyl type 1 chain in human erythrocyte membranes.", "Biochemistry", "1985 Jul 2", "Clausen H, Levery SB, McKibbin JM, Hakomori S", "glycan_xref_pubmed", "4041428", "glycan_xref_motif", "GGM.000042" ], [ "G40696TO", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000042" ], [ "G49963IQ", "Mouse monoclonal antibody F-3 recognizes the difucosyl type-2 blood group structure.", "Immunogenetics", "1983", "Lloyd KO, Larson G, Stromberg N, Thurin J, Karlsson KA", "glycan_xref_pubmed", "6188690", "glycan_xref_motif", "GGM.000019" ], [ "G49963IQ", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000019" ], [ "G00052MO", "A monoclonal antibody against human colonic adenoma recognizes difucosylated Type-2-blood-group chains.", "Bioscience reports", "1983 Feb", "Brown A, Feizi T, Gooi HC, Embleton MJ, Picard JK, Baldwin RW", "glycan_xref_pubmed", "6189529", "glycan_xref_motif", "GGM.000045" ], [ "G00052MO", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000045" ], [ "G00053MO", "Colorectal carcinoma antigens detected by hybridoma antibodies.", "Somatic cell genetics", "1979 Nov", "Koprowski H, Steplewski Z, Mitchell K, Herlyn M, Herlyn D, Fuhrer P", "glycan_xref_pubmed", "94699", "glycan_xref_motif", "GGM.000024" ], [ "G00053MO", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000024" ], [ "G00059MO", "Characterization of antibodies against ceramidetrihexoside and globoside.", "Immunochemistry", "1978 Jun", "Hamers MN, Donker-Koopman WE, Coulon-Morelec MJ, Dupouey P, Tager JM", "glycan_xref_pubmed", "700772", "glycan_xref_motif", "GGM.000068" ], [ "G00059MO", "Preparation and characterization of antibody to galactosyl(alpha 1 leads to 4)galactosyl(beta 1 leads to 4)glucosylceramide.", "Biochimica et biophysica acta", "1979 Jan 18", "Clarke JT, Embil JA", "glycan_xref_pubmed", "760826", "glycan_xref_motif", "GGM.000068" ], [ "G00059MO", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000068" ], [ "G00059MO", "Structures Common to Different Glycans", "missing tag=JT", "2015", "Stanley P, Cummings RD", "glycan_xref_pubmed", "28876849", "glycan_xref_motif", "GGM.000068" ], [ "G00061MO", "Characterization of antibodies against ceramidetrihexoside and globoside.", "Immunochemistry", "1978 Jun", "Hamers MN, Donker-Koopman WE, Coulon-Morelec MJ, Dupouey P, Tager JM", "glycan_xref_pubmed", "700772", "glycan_xref_motif", "GGM.000070" ], [ "G00061MO", "On the structure of cytolipin R, a ceramide tetrahexoside hapten from rat lymphosarcoma.", "Journal of lipid research", "1972 Jul", "Laine R, Sweeley CC, Li YT, Kisic A, Rapport MM", "glycan_xref_pubmed", "5068000", "glycan_xref_motif", "GGM.000070" ], [ "G00061MO", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000070" ], [ "G00061MO", "Structures Common to Different Glycans", "missing tag=JT", "2015", "Stanley P, Cummings RD", "glycan_xref_pubmed", "28876849", "glycan_xref_motif", "GGM.000070" ], [ "G41052GC", "The relationship between the N-acetylgalactosamine content and the blood group Sda activity of Tamm and Horsfall urinary glycoprotein.", "Biochemical and biophysical research communications", "1980 Apr 29", "Soh CP, Morgan WT, Watkins WM, Donald AS", "glycan_xref_pubmed", "6156677", "glycan_xref_motif", "GGM.000051" ], [ "G41052GC", "Primary structure of the oligosaccharide determinant of blood group Cad specificity.", "The Journal of biological chemistry", "1983 Jun 25", "Blanchard D, Cartron JP, Fournet B, Montreuil J, van Halbeek H, Vliegenthart JF", "glycan_xref_pubmed", "6190803", "glycan_xref_motif", "GGM.000051" ], [ "G41052GC", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000051" ], [ "G73708UL", "The elderberry (Sambucus nigra L.) bark lectin recognizes the Neu5Ac(alpha 2-6)Gal/GalNAc sequence.", "The Journal of biological chemistry", "1987 Feb 5", "Shibuya N, Goldstein IJ, Broekaert WF, Nsimba-Lubaki M, Peeters B, Peumans WJ", "glycan_xref_pubmed", "3805045", "glycan_xref_motif", "GGM.000035" ], [ "G73708UL", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000035" ], [ "G73708UL", "Siglec-mediated regulation of immune cell function in disease.", "Nature reviews. Immunology", "2014 Oct", "Macauley MS, Crocker PR, Paulson JC", "glycan_xref_pubmed", "25234143", "glycan_xref_motif", "GGM.000035" ], [ "G56045WU", "Three types of blood group I specificity among monoclonal anti-I autoantibodies revealed by analogues of a branched erythrocyte glycolipid.", "The Journal of experimental medicine", "1979 Apr 1", "Feizi T, Childs RA, Watanabe K, Hakomori SI", "glycan_xref_pubmed", "429966", "glycan_xref_motif", "GGM.000003" ], [ "G56045WU", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000003" ], [ "G74353FF", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000038" ], [ "G58896AZ", "The reactions of antibodies to paragloboside (lacto-N-neotetraosyl ceramide) with human erythrocytes and lymphocytes.", "Journal of immunology (Baltimore, Md. : 1950)", "1977 Apr", "Schwarting GA, Marcus DM", "glycan_xref_pubmed", "850070", "glycan_xref_motif", "GGM.000077" ], [ "G58896AZ", "Two monoclonal anticarbohydrate antibodies directed to glycosphingolipids with a lacto-N-glycosyl type II chain.", "The Journal of biological chemistry", "1981 Nov 10", "Young WW Jr, Portoukalian J, Hakomori S", "glycan_xref_pubmed", "7287743", "glycan_xref_motif", "GGM.000077" ], [ "G58896AZ", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000077" ], [ "G58896AZ", "Structures Common to Different Glycans", "missing tag=JT", "2015", "Stanley P, Cummings RD", "glycan_xref_pubmed", "28876849", "glycan_xref_motif", "GGM.000077" ], [ "G21856LC", "The different distribution of asialo GM1 and Forssman antigen in the small intestine of mouse demonstrated by immunofluorescence staining.", "Journal of biochemistry", "1981 Nov", "Suzuki A, Yamakawa T", "glycan_xref_pubmed", "6175621", "glycan_xref_motif", "GGM.000099" ], [ "G21856LC", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000099" ], [ "G00672PE", "Mouse Siglec-F and human Siglec-8 are functionally convergent paralogs that are selectively expressed on eosinophils and recognize 6'-sulfo-sialyl Lewis X as a preferred glycan ligand.", "Glycobiology", "2005 Nov", "Tateno H, Crocker PR, Paulson JC", "glycan_xref_pubmed", "15972893", "glycan_xref_motif", "GGM.000025" ], [ "G00672PE", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000025" ], [ "G79535HZ", "The immunologically reactive O-linked polysaccharide chains derived from circulating cathodic antigen isolated from the human blood fluke Schistosoma mansoni have Lewis x as repeating unit.", "European journal of biochemistry", "1994 Oct 1", "Van Dam GJ, Bergwerff AA, Thomas-Oates JE, Rotmans JP, Kamerling JP, Vliegenthart JF, Deelder AM", "glycan_xref_pubmed", "7925469", "glycan_xref_motif", "GGM.000031" ], [ "G79535HZ", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000031" ], [ "G66163TI", "Blood group A determinants with mono- and difucosyl type 1 chain in human erythrocyte membranes.", "Biochemistry", "1985 Jul 2", "Clausen H, Levery SB, McKibbin JM, Hakomori S", "glycan_xref_pubmed", "4041428", "glycan_xref_motif", "GGM.000044" ], [ "G66163TI", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000044" ], [ "G62735WZ", "Novel blood group H glycolipid antigens exclusively expressed in blood group A and AB erythrocytes (type 3 chain H). I. Isolation and chemical characterization.", "The Journal of biological chemistry", "1986 Jan 25", "Clausen H, Levery SB, Kannagi R, Hakomori S", "glycan_xref_pubmed", "3944091", "glycan_xref_motif", "GGM.000041" ], [ "G62735WZ", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000041" ], [ "G43784HS", "Carbohydrate structures of nonspecific cross-reacting antigen-2, a glycoprotein purified from meconium as an antigen cross-reacting with anticarcinoembryonic antigen antibody. Occurrence of complex-type sugar chains with the Gal beta 1----3GlcNAc beta 1----3Gal beta 1----4GlcNAc beta 1----outer chains.", "The Journal of biological chemistry", "1989 Oct 25", "Yamashita K, Totani K, Iwaki Y, Kuroki M, Matsuoka Y, Endo T, Kobata A", "glycan_xref_pubmed", "2808357", "glycan_xref_motif", "GGM.000006" ], [ "G43784HS", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000006" ], [ "G43191LZ", "Human B-lymphocytes express alpha2-6-sialylated 6-sulfo-N-acetyllactosamine serving as a preferred ligand for CD22/Siglec-2.", "The Journal of biological chemistry", "2007 Nov 2", "Kimura N, Ohmori K, Miyazaki K, Izawa M, Matsuzaki Y, Yasuda Y, Takematsu H, Kozutsumi Y, Moriyama A, Kannagi R", "glycan_xref_pubmed", "17728258", "glycan_xref_motif", "GGM.000026" ], [ "G43191LZ", "The repertoire of glycan determinants in the human glycome.", "Molecular bioSystems", "2009 Oct", "Cummings RD", "glycan_xref_pubmed", "19756298", "glycan_xref_motif", "GGM.000026" ], [ "G43191LZ", "Siglec-mediated regulation of immune cell function in disease.", "Nature reviews. Immunology", "2014 Oct", "Macauley MS, Crocker PR, Paulson JC", "glycan_xref_pubmed", "25234143", "glycan_xref_motif", "GGM.000026" ], [ "G80722US", "Identification of a major carbohydrate capping group of the L-selectin ligand on high endothelial venules in human lymph nodes as 6-sulfo sialyl Lewis X.", "The Journal of biological chemistry", "1998 May 1", "Mitsuoka C, Sawada-Kasugai M, Ando-Furui K, Izawa M, Nakanishi H, Nakamura S, Ishida H, Kiso M, Kannagi R", "glycan_xref_pubmed", "9556613", "glycan_xref_motif", "GGM.000027" ] ] }, "readme": "Name\n - Glycan Citations (GlycoMotif)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2021-03-16T15:44:18.145789\n\nModified on\n - 2023-03-14T16:51:16.564Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu], Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides citations for the associated glycan (GlyTouCan Accession) from GlycoMotif (https://glycomotif.glyomics.org/). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLY_000281) and the associated PMIDs are derived from the Glycan Motif dataset (https://data.glygen.org/GLY_000283).\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Citations\n - Motif\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the associated PMIDs for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list. The MEDLINE format is used to add Journal, Author, Title detail associated with the publications. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_masterlist.csv\n Name: glycan_motif.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_motif.csv\n Output Subdomain\n Name: glycan_citations_motif.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_citations_motif.csv\n Name: glycan_citations_motif.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_citations_motif.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"116\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"121\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/glycan_citations_motif.csv" }