{ "bcoid": "GLY_000553", "title": "Human Xref The O-GlcNAc Database", "description": "Human Xref The O-GlcNAc Database contains human (taxid:9606) UniProtKB canonical accessions mapped to ...", "filename": "human_protein_xref_oglcnac_db.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Proteoform" ], "tag": [ "The O-GlcNAc Database" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "P40425-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_oglcnac_db", "P30613", "O-GlcNAc MCW" ], [ "P40425-1", "protein_xref_oglcnac_db", "P40425", "O-GlcNAc MCW" ], [ "P40429-1", "protein_xref_oglcnac_db", "P40429", "O-GlcNAc MCW" ], [ "Q5VVP1-1", "protein_xref_oglcnac_db", "Q5VVP1", "O-GlcNAc MCW" ], [ "A6NIR3-1", "protein_xref_oglcnac_db", "A6NIR3", "O-GlcNAc MCW" ], [ "Q86VY4-1", "protein_xref_oglcnac_db", "Q86VY4", "O-GlcNAc MCW" ], [ "Q9Y5S9-1", "protein_xref_oglcnac_db", "Q9Y5S9", "O-GlcNAc MCW" ], [ "P19075-1", "protein_xref_oglcnac_db", "P19075", "O-GlcNAc MCW" ], [ "O15417-1", "protein_xref_oglcnac_db", "O15417", "O-GlcNAc MCW" ], [ "Q96RU7-1", "protein_xref_oglcnac_db", "Q96RU7", "O-GlcNAc MCW" ], [ "Q96RU3-1", "protein_xref_oglcnac_db", "Q96RU3", "O-GlcNAc MCW" ], [ "Q96RU2-1", "protein_xref_oglcnac_db", "Q96RU2", "O-GlcNAc MCW" ], [ "Q96RU8-1", "protein_xref_oglcnac_db", "Q96RU8", "O-GlcNAc MCW" ], [ "Q9Y297-1", "protein_xref_oglcnac_db", "Q9Y297", "O-GlcNAc MCW" ], [ "Q9Y294-1", "protein_xref_oglcnac_db", "Q9Y294", "O-GlcNAc MCW" ], [ "Q9Y295-1", "protein_xref_oglcnac_db", "Q9Y295", "O-GlcNAc MCW" ], [ "O00507-1", "protein_xref_oglcnac_db", "O00507", "O-GlcNAc MCW" ], [ "O00505-1", "protein_xref_oglcnac_db", "O00505", "O-GlcNAc MCW" ], [ "Q8IYD1-1", "protein_xref_oglcnac_db", "Q8IYD1", "O-GlcNAc MCW" ], [ "Q8IYD8-1", "protein_xref_oglcnac_db", "Q8IYD8", "O-GlcNAc MCW" ], [ "Q8IVD9-1", "protein_xref_oglcnac_db", "Q8IVD9", "O-GlcNAc MCW" ], [ "Q5M9N0-1", "protein_xref_oglcnac_db", "Q5M9N0", "O-GlcNAc MCW" ], [ "Q9UQ26-6", "protein_xref_oglcnac_db", "Q9UQ26", "O-GlcNAc MCW" ], [ "Q5HYW2-1", "protein_xref_oglcnac_db", "Q5HYW2", "O-GlcNAc MCW" ], [ "P45984-1", "protein_xref_oglcnac_db", "P45984", "O-GlcNAc MCW" ], [ "Q9Y5J6-1", "protein_xref_oglcnac_db", "Q9Y5J6", "O-GlcNAc MCW" ], [ "Q9H7J1-1", "protein_xref_oglcnac_db", "Q9H7J1", "O-GlcNAc MCW" ], [ "O60830-1", "protein_xref_oglcnac_db", "O60830", "O-GlcNAc MCW" ], [ "O60831-1", "protein_xref_oglcnac_db", "O60831", "O-GlcNAc MCW" ], [ "O60832-1", "protein_xref_oglcnac_db", "O60832", "O-GlcNAc MCW" ], [ "Q7LDG7-1", "protein_xref_oglcnac_db", "Q7LDG7", "O-GlcNAc MCW" ], [ "Q9NPI6-1", "protein_xref_oglcnac_db", "Q9NPI6", "O-GlcNAc MCW" ], [ "Q9NPI1-1", "protein_xref_oglcnac_db", "Q9NPI1", "O-GlcNAc MCW" ], [ "Q05397-1", "protein_xref_oglcnac_db", "Q05397", "O-GlcNAc MCW" ], [ "Q96LT9-1", "protein_xref_oglcnac_db", "Q96LT9", "O-GlcNAc MCW" ], [ "Q96LT6-1", "protein_xref_oglcnac_db", "Q96LT6", "O-GlcNAc MCW" ], [ "Q96LT7-1", "protein_xref_oglcnac_db", "Q96LT7", "O-GlcNAc MCW" ], [ "Q6IE37-1", "protein_xref_oglcnac_db", "Q6IE37", "O-GlcNAc MCW" ], [ "P62280-1", "protein_xref_oglcnac_db", "P62280", "O-GlcNAc MCW" ], [ "Q10571-1", "protein_xref_oglcnac_db", "Q10571", "O-GlcNAc MCW" ], [ "Q15532-1", "protein_xref_oglcnac_db", "Q15532", "O-GlcNAc MCW" ], [ "Q96AQ1-1", "protein_xref_oglcnac_db", "Q96AQ1", "O-GlcNAc MCW" ], [ "Q96AQ6-1", "protein_xref_oglcnac_db", "Q96AQ6", "O-GlcNAc MCW" ], [ "Q6P1M9-1", "protein_xref_oglcnac_db", "Q6P1M9", "O-GlcNAc MCW" ], [ "Q6P1M3-1", "protein_xref_oglcnac_db", "Q6P1M3", "O-GlcNAc MCW" ], [ "P57081-1", "protein_xref_oglcnac_db", "P57081", "O-GlcNAc MCW" ], [ "P57088-1", "protein_xref_oglcnac_db", "P57088", "O-GlcNAc MCW" ], [ "Q8WU79-1", "protein_xref_oglcnac_db", "Q8WU79", "O-GlcNAc MCW" ], [ "Q8TED1-1", "protein_xref_oglcnac_db", "Q8TED1", "O-GlcNAc MCW" ], [ "O43598-1", "protein_xref_oglcnac_db", "O43598", "O-GlcNAc MCW" ], [ "O43597-1", "protein_xref_oglcnac_db", "O43597", "O-GlcNAc MCW" ], [ "O43592-1", "protein_xref_oglcnac_db", "O43592", "O-GlcNAc MCW" ], [ "A5PLN9-1", "protein_xref_oglcnac_db", "A5PLN9", "O-GlcNAc MCW" ], [ "P33778-1", "protein_xref_oglcnac_db", "P33778", "O-GlcNAc MCW" ], [ "P21964-1", "protein_xref_oglcnac_db", "P21964", "O-GlcNAc MCW" ], [ "P01040-1", "protein_xref_oglcnac_db", "P01040", "O-GlcNAc MCW" ], [ "Q9P1Z3-1", "protein_xref_oglcnac_db", "Q9P1Z3", "O-GlcNAc MCW" ], [ "Q9P1Z2-1", "protein_xref_oglcnac_db", "Q9P1Z2", "O-GlcNAc MCW" ], [ "P19404-1", "protein_xref_oglcnac_db", "P19404", "O-GlcNAc MCW" ], [ "Q86YL7-1", "protein_xref_oglcnac_db", "Q86YL7", "O-GlcNAc MCW" ], [ "P53794-1", "protein_xref_oglcnac_db", "P53794", "O-GlcNAc MCW" ], [ "Q92896-1", "protein_xref_oglcnac_db", "Q92896", "O-GlcNAc MCW" ], [ "Q562F6-1", "protein_xref_oglcnac_db", "Q562F6", "O-GlcNAc MCW" ], [ "P0DN81-1", "protein_xref_oglcnac_db", "P0DN81", "O-GlcNAc MCW" ], [ "P05412-1", "protein_xref_oglcnac_db", "P05412", "O-GlcNAc MCW" ], [ "Q9Y291-1", "protein_xref_oglcnac_db", "Q9Y291", "O-GlcNAc MCW" ], [ "Q86WH2-1", "protein_xref_oglcnac_db", "Q86WH2", "O-GlcNAc MCW" ], [ "Q15477-1", "protein_xref_oglcnac_db", "Q15477", "O-GlcNAc MCW" ], [ "Q15475-1", "protein_xref_oglcnac_db", "Q15475", "O-GlcNAc MCW" ], [ "Q96NR7-1", "protein_xref_oglcnac_db", "Q96NR7", "O-GlcNAc MCW" ], [ "P55789-1", "protein_xref_oglcnac_db", "P55789", "O-GlcNAc MCW" ], [ "P55786-1", "protein_xref_oglcnac_db", "P55786", "O-GlcNAc MCW" ], [ "P13667-1", "protein_xref_oglcnac_db", "P13667", "O-GlcNAc MCW" ], [ "P31689-1", "protein_xref_oglcnac_db", "P31689", "O-GlcNAc MCW" ], [ "Q9BYW2-1", "protein_xref_oglcnac_db", "Q9BYW2", "O-GlcNAc MCW" ], [ "Q49AA0-1", "protein_xref_oglcnac_db", "Q49AA0", "O-GlcNAc MCW" ], [ "O00506-1", "protein_xref_oglcnac_db", "O00506", "O-GlcNAc MCW" ], [ "P05556-1", "protein_xref_oglcnac_db", "P05556", "O-GlcNAc MCW" ], [ "Q8TB61-1", "protein_xref_oglcnac_db", "Q8TB61", "O-GlcNAc MCW" ], [ "Q8TB68-1", "protein_xref_oglcnac_db", "Q8TB68", "O-GlcNAc MCW" ], [ "Q02218-1", "protein_xref_oglcnac_db", "Q02218", "O-GlcNAc MCW" ], [ "Q92917-1", "protein_xref_oglcnac_db", "Q92917", "O-GlcNAc MCW" ], [ "P15927-1", "protein_xref_oglcnac_db", "P15927", "O-GlcNAc MCW" ], [ "P15924-1", "protein_xref_oglcnac_db", "P15924", "O-GlcNAc MCW" ] ] }, "readme": "Name\n - Human Xref The O-GlcNAc Database\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2021-02-22T19:23:09.094102\n\nModified on\n - 2022-09-26T09:08:12.736098\n\nCreated by\n - [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Stephanie Olivier-Van Stichelen [solivier@mcw.edu], Eugenia Wulff-Fuentes [ewulff@mcw.edu], Rex R. Berendt [rberendt@mcw.edu], Logan Massman [lmassman@mcw.edu], Laura Danner [ldanner@mcw.edu]\n\nChecksum\n - \n\nUsability Domain\n - Human Xref The O-GlcNAc Database contains human (taxid:9606) UniProtKB canonical accessions mapped to the The O-GlcNAc Database accessions.\n\nDescription Domain\n Keywords\n - O-GlcNAc\n\n Pipeline Steps\n - Step-1: The script maps the UniProtKB accesions to the The O-GlcNAc Database accessions.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_proteoform_glycosylation_sites_oglcnac_mcw.csv\n Output Subdomain\n Name: human_protein_xref_oglcnac_db.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_protein_xref_oglcnac_db.csv\n Name: human_protein_xref_oglcnac_db.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_protein_xref_oglcnac_db.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"8816\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"8816\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/human_protein_xref_oglcnac_db.csv" }