{ "bcoid": "GLY_000527", "title": "Sandbox accessions (GlyTouCan Accession)", "description": "The dataset includes GlyTouCan accessions included in Sandbox application.", "filename": "glycan_xref_sandbox.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tag": [ "Sanbox Glycan accessions" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ], "species": [ "Homo sapiens", "Mus musculus", "Sus scrofa", "Drosophila melanogaster", "Rattus norvegicus", "Severe acute respiratory syndrome coronavirus 2", "Rattus", "Sus scrofa domesticus", "Saccharomyces cerevisiae", "Hepacivirus C", "Dictyostelium discoideum" ] }, "minitable": { "content": [ [ "G00012RZ...", "G00012RZ..." ], [ "G00017IP...", "G00017IP..." ] ], "headers": [ "glytoucan_ac...", "xref_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_key" } ], [ "G00012RZ", "G00012RZ", "glycan_xref_sandbox" ], [ "G00017IP", "G00017IP", "glycan_xref_sandbox" ], [ "G00025HU", "G00025HU", "glycan_xref_sandbox" ], [ "G00025YC", "G00025YC", "glycan_xref_sandbox" ], [ "G00026MO", "G00026MO", "glycan_xref_sandbox" ], [ "G00027JG", "G00027JG", "glycan_xref_sandbox" ], [ "G00028MO", "G00028MO", "glycan_xref_sandbox" ], [ "G00029MO", "G00029MO", "glycan_xref_sandbox" ], [ "G00030HB", "G00030HB", "glycan_xref_sandbox" ], [ "G00030MO", "G00030MO", "glycan_xref_sandbox" ], [ "G00031MO", "G00031MO", "glycan_xref_sandbox" ], [ "G00032MO", "G00032MO", "glycan_xref_sandbox" ], [ "G00033MO", "G00033MO", "glycan_xref_sandbox" ], [ "G00034MO", "G00034MO", "glycan_xref_sandbox" ], [ "G00034UM", "G00034UM", "glycan_xref_sandbox" ], [ "G00035MO", "G00035MO", "glycan_xref_sandbox" ], [ "G00036MO", "G00036MO", "glycan_xref_sandbox" ], [ "G00037MO", "G00037MO", "glycan_xref_sandbox" ], [ "G00038MO", "G00038MO", "glycan_xref_sandbox" ], [ "G00039MO", "G00039MO", "glycan_xref_sandbox" ], [ "G00040MO", "G00040MO", "glycan_xref_sandbox" ], [ "G00041IL", "G00041IL", "glycan_xref_sandbox" ], [ "G00041MO", "G00041MO", "glycan_xref_sandbox" ], [ "G00042MO", "G00042MO", "glycan_xref_sandbox" ], [ "G00043MO", "G00043MO", "glycan_xref_sandbox" ], [ "G00044MO", "G00044MO", "glycan_xref_sandbox" ], [ "G00056HH", "G00056HH", "glycan_xref_sandbox" ], [ "G00063MO", "G00063MO", "glycan_xref_sandbox" ], [ "G00069YC", "G00069YC", "glycan_xref_sandbox" ], [ "G00079IK", "G00079IK", "glycan_xref_sandbox" ], [ "G00091UN", "G00091UN", "glycan_xref_sandbox" ], [ "G00094SE", "G00094SE", "glycan_xref_sandbox" ], [ "G00104PH", "G00104PH", "glycan_xref_sandbox" ], [ "G00112IO", "G00112IO", "glycan_xref_sandbox" ], [ "G00113FP", "G00113FP", "glycan_xref_sandbox" ], [ "G00139WK", "G00139WK", "glycan_xref_sandbox" ], [ "G00140YZ", "G00140YZ", "glycan_xref_sandbox" ], [ "G00152SF", "G00152SF", "glycan_xref_sandbox" ], [ "G00152UP", "G00152UP", "glycan_xref_sandbox" ], [ "G00155YT", "G00155YT", "glycan_xref_sandbox" ], [ "G00164QP", "G00164QP", "glycan_xref_sandbox" ], [ "G00167VE", "G00167VE", "glycan_xref_sandbox" ], [ "G00176HZ", "G00176HZ", "glycan_xref_sandbox" ], [ "G00186OS", "G00186OS", "glycan_xref_sandbox" ], [ "G00196CO", "G00196CO", "glycan_xref_sandbox" ], [ "G00201AB", "G00201AB", "glycan_xref_sandbox" ], [ "G00210ZX", "G00210ZX", "glycan_xref_sandbox" ], [ "G00211WY", "G00211WY", "glycan_xref_sandbox" ], [ "G00212RH", "G00212RH", "glycan_xref_sandbox" ], [ "G00219DO", "G00219DO", "glycan_xref_sandbox" ], [ "G00219VH", "G00219VH", "glycan_xref_sandbox" ], [ "G00221CZ", "G00221CZ", "glycan_xref_sandbox" ], [ "G00227RN", "G00227RN", "glycan_xref_sandbox" ], [ "G00230CO", "G00230CO", "glycan_xref_sandbox" ], [ "G00230IL", "G00230IL", "glycan_xref_sandbox" ], [ "G00231IQ", "G00231IQ", "glycan_xref_sandbox" ], [ "G00231WL", "G00231WL", "glycan_xref_sandbox" ], [ "G00234GG", "G00234GG", "glycan_xref_sandbox" ], [ "G00238CK", "G00238CK", "glycan_xref_sandbox" ], [ "G00241VQ", "G00241VQ", "glycan_xref_sandbox" ], [ "G00247JV", "G00247JV", "glycan_xref_sandbox" ], [ "G00247PL", "G00247PL", "glycan_xref_sandbox" ], [ "G00249IY", "G00249IY", "glycan_xref_sandbox" ], [ "G00249XF", "G00249XF", "glycan_xref_sandbox" ], [ "G00257RE", "G00257RE", "glycan_xref_sandbox" ], [ "G00257UQ", "G00257UQ", "glycan_xref_sandbox" ], [ "G00277SO", "G00277SO", "glycan_xref_sandbox" ], [ "G00279YF", "G00279YF", "glycan_xref_sandbox" ], [ "G00281HB", "G00281HB", "glycan_xref_sandbox" ], [ "G00287UD", "G00287UD", "glycan_xref_sandbox" ], [ "G00288RP", "G00288RP", "glycan_xref_sandbox" ], [ "G00318AV", "G00318AV", "glycan_xref_sandbox" ], [ "G00320ZP", "G00320ZP", "glycan_xref_sandbox" ], [ "G00321UH", "G00321UH", "glycan_xref_sandbox" ], [ "G00328CG", "G00328CG", "glycan_xref_sandbox" ], [ "G00335DM", "G00335DM", "glycan_xref_sandbox" ], [ "G00335JE", "G00335JE", "glycan_xref_sandbox" ], [ "G00340NM", "G00340NM", "glycan_xref_sandbox" ], [ "G00349CA", "G00349CA", "glycan_xref_sandbox" ], [ "G00357HK", "G00357HK", "glycan_xref_sandbox" ], [ "G00361LC", "G00361LC", "glycan_xref_sandbox" ], [ "G00361YF", "G00361YF", "glycan_xref_sandbox" ], [ "G00368HM", "G00368HM", "glycan_xref_sandbox" ], [ "G00369RM", "G00369RM", "glycan_xref_sandbox" ] ] }, "readme": "Name\n - Sandbox accessions (GlyTouCan Accession)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2020-09-10T15:28:11.224030\n\nModified on\n - 2023-02-15T19:12:32.564Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Will York [will@ccrc.uga.edu], Will York [will@ccrc.uga.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset includes GlyTouCan accessions included in Sandbox application.\n\nDescription Domain\n Keywords\n - GlyTouCan accessions\n - Glycans\n - Sandbox\n\n Pipeline Steps\n - Step-1: The dataset was directly downloaded from the provider and a script was used to check if the GlyTouCan Ac is included in the glycan masterlist (https://data.glygen.org/GLY_000281)\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_masterlist.csv\n Name: accessionlist.csv\n URI: https:/data.glygen.org/ln2downloads/sandbox/02_20_2024/accessionlist.csv\n Output Subdomain\n Name: glycan_xref_sandbox.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_xref_sandbox.csv\n Name: glycan_xref_sandbox.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/glycan_xref_sandbox.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"19120\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"19120\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/glycan_xref_sandbox.csv" }