{
    "bcoid": "GLY_000483",
    "title": "Human Proteoform Citations (GlyConnect)",
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                "Klein A, Carnoy C, Lamblin G, Roussel P, van Kuik JA, de Waard P, Vliegenthart JF",
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                "European journal of biochemistry",
                "1991 May 23",
                "Klein A, Carnoy C, Lamblin G, Roussel P, van Kuik JA, de Waard P, Vliegenthart JF",
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                "Isolation and structural characterization of novel neutral oligosaccharide-alditols from respiratory-mucus glycoproteins of a patient suffering from bronchiectasis. 1. Structure of 11 oligosaccharides having the GlcNAc beta(1----3)Gal beta(1----4)GlcNAc beta(1----6)GalNAc-o1 structural element in common.",
                "European journal of biochemistry",
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                "European journal of biochemistry",
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                "European journal of biochemistry",
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                "European journal of biochemistry",
                "1991 May 23",
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                "Herkt F, Parente JP, Leroy Y, Fournet B, Blanchard D, Cartron JP, van Halbeek H, Vliegenthart JF",
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            [
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                "O-glycosylated species of natural human tumor-necrosis factor-alpha.",
                "European journal of biochemistry",
                "1996 Jan 15",
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                "protein_xref_pubmed",
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            [
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                "The Journal of biological chemistry",
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                "The Journal of biological chemistry",
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                "The Journal of biological chemistry",
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                "The Journal of biological chemistry",
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                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
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                "",
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                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
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                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
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            [
                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
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                "8034632",
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            [
                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
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                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
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                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
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                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
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                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
                "protein_xref_pubmed",
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            [
                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
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                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
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                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
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                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
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            [
                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
                "protein_xref_pubmed",
                "8034632",
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                "401",
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            [
                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
                "protein_xref_pubmed",
                "8034632",
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                "401",
                "G24366RG"
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            [
                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
                "protein_xref_pubmed",
                "8034632",
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                "401",
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            [
                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
                "protein_xref_pubmed",
                "8034632",
                "protein_xref_glyconnect",
                "401",
                "G69876CC"
            ],
            [
                "",
                "Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis.",
                "The Journal of biological chemistry",
                "1994 Jul 22",
                "Lo-Guidice JM, Wieruszeski JM, Lemoine J, Verbert A, Roussel P, Lamblin G",
                "protein_xref_pubmed",
                "8034632",
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                "401",
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    },
    "readme": "Name\n   - Human Proteoform Citations (GlyConnect)\n\nVersion\n   - v-2.4.1\n\nCreated on\n  - 2020-04-28T10:49:06.505148\n\nModified on\n   - 2023-03-14T16:36:45.444Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n   - \n\nUsability Domain\n   - The Human Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000329. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - GlyConnect\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n   Output Subdomain\n      Name: human_proteoform_citations_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_proteoform_citations_glycosylation_sites_glyconnect.csv\n      Name: human_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1244\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"428\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"82\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"377\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"421\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"428\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"2\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1667\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"2051\"",
    "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/human_proteoform_citations_glycosylation_sites_glyconnect.csv"
}
