{ "bcoid": "GLY_000440", "title": "SARS-CoV1 Protein Sequence Info (UniProtKB)", "description": "The SARS coronavirus (SARS-CoV-1) Protein Sequence Info (UniProtKB) dataset contains sarscov1 [taxid:694009] ...", "filename": "sarscov1_protein_sequenceinfo.csv", "filetype": "csv", "categories": { "species": [ "Severe acute respiratory syndrome-related coronavirus" ], "molecule": [ "Protein" ], "tag": [ "All Protein Sequence Info" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P59596-1...", "P59596-1..." ], [ "P0C6U8-1...", "P0C6U8-1..." ] ], "headers": [ "uniprotkb_ca...", "uniprotkb_is..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "uniprotkb_isoform_ac" }, { "type": "string", "label": "protein_existence" }, { "type": "string", "label": "sequence_version" }, { "type": "string", "label": "sequence_header" } ], [ "P59596-1", "P59596-1", "1", "1", "sp|P59596-1|VME1_SARS Isoform 1 of Membrane protein OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN=M PE=1 SV=1 CANONICAL=P59596-1" ], [ "P0C6U8-1", "P0C6U8-1", "1", "1", "sp|P0C6U8-1|R1A_SARS Isoform 1 of Replicase polyprotein 1a OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN= PE=1 SV=1 CANONICAL=P0C6U8-1" ], [ "P59594-1", "P59594-1", "1", "1", "sp|P59594-1|SPIKE_SARS Isoform 1 of Spike glycoprotein OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN=S PE=1 SV=1 CANONICAL=P59594-1" ], [ "P59595-1", "P59595-1", "1", "1", "sp|P59595-1|NCAP_SARS Isoform 1 of Nucleoprotein OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN=N PE=1 SV=1 CANONICAL=P59595-1" ], [ "Q7TLC7-1", "Q7TLC7-1", "1", "1", "sp|Q7TLC7-1|Y14_SARS Isoform 1 of Uncharacterized protein 14 OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN= PE=1 SV=1 CANONICAL=Q7TLC7-1" ], [ "Q80H93-1", "Q80H93-1", "1", "1", "sp|Q80H93-1|NS8B_SARS Isoform 1 of ORF8b protein OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN= PE=1 SV=1 CANONICAL=Q80H93-1" ], [ "P59635-1", "P59635-1", "1", "1", "sp|P59635-1|NS7A_SARS Isoform 1 of ORF7a protein OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN= PE=1 SV=1 CANONICAL=P59635-1" ], [ "Q7TFA1-1", "Q7TFA1-1", "1", "1", "sp|Q7TFA1-1|NS7B_SARS Isoform 1 of Protein non-structural 7b OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN= PE=1 SV=1 CANONICAL=Q7TFA1-1" ], [ "Q7TFA0-1", "Q7TFA0-1", "3", "1", "sp|Q7TFA0-1|NS8A_SARS Isoform 1 of ORF8a protein OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN= PE=3 SV=1 CANONICAL=Q7TFA0-1" ], [ "P59633-1", "P59633-1", "1", "1", "sp|P59633-1|NS3B_SARS Isoform 1 of ORF3b protein OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN= PE=1 SV=1 CANONICAL=P59633-1" ], [ "P59632-1", "P59632-1", "1", "1", "sp|P59632-1|AP3A_SARS Isoform 1 of ORF3a protein OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN= PE=1 SV=1 CANONICAL=P59632-1" ], [ "P59637-1", "P59637-1", "1", "1", "sp|P59637-1|VEMP_SARS Isoform 1 of Envelope small membrane protein OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN=E PE=1 SV=1 CANONICAL=P59637-1" ], [ "P59636-1", "P59636-1", "1", "1", "sp|P59636-1|ORF9B_SARS Isoform 1 of ORF9b protein OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN= PE=1 SV=1 CANONICAL=P59636-1" ], [ "P0C6X7-1", "P0C6X7-1", "1", "1", "sp|P0C6X7-1|R1AB_SARS Isoform 1 of Replicase polyprotein 1ab OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN=rep PE=1 SV=1 CANONICAL=P0C6X7-1" ], [ "P59634-1", "P59634-1", "1", "1", "sp|P59634-1|NS6_SARS Isoform 1 of ORF6 protein OS=Severe acute respiratory syndrome-related coronavirus OX=694009 GN= PE=1 SV=1 CANONICAL=P59634-1" ] ] }, "readme": "Name\n - SARS-CoV1 Protein Sequence Info (UniProtKB)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2020-04-03T11:46:41.584409\n\nModified on\n - 2022-09-26T09:05:56.552328\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The SARS coronavirus (SARS-CoV-1) Protein Sequence Info (UniProtKB) dataset contains sarscov1 [taxid:694009] UniProtKB protein fasta sequence information that includes sequence version and fasta header. The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein sequence info\n - fasta header\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB sequence for all sarscov1 isoform accessions data from the triplestore containing triples from nt file and extracts it into a dataset in a fasta format\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sars-coronavirus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-sars-coronavirus.nt\n Output Subdomain\n Name: sarscov1_protein_sequenceinfo.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/sarscov1_protein_sequenceinfo.csv\n Name: sarscov1_protein_sequenceinfo.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/sarscov1_protein_sequenceinfo.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"15\"\n Name: \"uniprotkb_isoform_ac\"\n Description: \"\"UniProtKB isoform that includes the canonical accession and other isoforms generated by alternative splicing\"\n Unique Values: \"15\"\n Name: \"protein_existence\"\n Description: \"In UniProtKB there are 5 types of evidence for the existence of a protein: 1. Experimental evidence at protein level; 2. Experimental evidence at transcript level; 3. Protein inferred from homology; 4. Protein predicted; 5. Protein uncertain\"\n Unique Values: \"2\"\n Name: \"sequence_version\"\n Description: \"The version of the protein fasta sequence for a given accession in UniProtKB \"\n Unique Values: \"1\"\n Name: \"sequence_header\"\n Description: \"The FASTA header for the UniProtKB protein FASTA sequences\"\n Unique Values: \"15\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/sarscov1_protein_sequenceinfo.csv" }