{ "bcoid": "GLY_000406", "title": "Mouse NCBI Protein Linkouts", "description": "The Mouse NCBI Protein Linkouts contains mouse [taxid:10090] NCBI RefSeq accessions with their corresponding ...", "filename": "mouse_protein_ncbi_linkouts.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tag": [ "NCBI Linkouts" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "10227...", "Protein..." ], [ "10227...", "Protein..." ] ], "headers": [ "ProviderId...", "Database..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "ProviderId" }, { "type": "string", "label": "Database" }, { "type": "string", "label": "UID" }, { "type": "string", "label": "URL" }, { "type": "string", "label": "IconUrl" }, { "type": "string", "label": "UrlName" }, { "type": "string", "label": "SubjectType" }, { "type": "string", "label": "Attribute" } ], [ "10227", "Protein", "NP_598608", "https://glygen.org/protein/Q8BH24", "", "", "", "" ], [ "10227", "Protein", "NP_766282", "https://glygen.org/protein/Q8BH27", "", "", "", "" ], [ "10227", "Protein", "NP_001311444", "https://glygen.org/protein/Q8BH26", "", "", "", "" ], [ "10227", "Protein", "NP_001239432", "https://glygen.org/protein/Q80WT5", "", "", "", "" ], [ "10227", "Protein", "NP_001074728", "https://glygen.org/protein/B2RXV4", "", "", "", "" ], [ "10227", "Protein", "NP_001074832", "https://glygen.org/protein/E9Q3P4", "", "", "", "" ], [ "10227", "Protein", "NP_081894", "https://glygen.org/protein/A5H0M4", "", "", "", "" ], [ "10227", "Protein", "NP_904335", "https://glygen.org/protein/P03899", "", "", "", "" ], [ "10227", "Protein", "NP_061212", "https://glygen.org/protein/O35153", "", "", "", "" ], [ "10227", "Protein", "NP_904329", "https://glygen.org/protein/P03893", "", "", "", "" ], [ "10227", "Protein", "NP_062291", "https://glygen.org/protein/Q9QYH9", "", "", "", "" ], [ "10227", "Protein", "NP_001297559", "https://glygen.org/protein/P52479", "", "", "", "" ], [ "10227", "Protein", "NP_001128599", "https://glygen.org/protein/P02762", "", "", "", "" ], [ "10227", "Protein", "NP_062765", "https://glygen.org/protein/Q9QYH6", "", "", "", "" ], [ "10227", "Protein", "NP_001156945", "https://glygen.org/protein/Q08AU9", "", "", "", "" ], [ "10227", "Protein", "NP_001191749", "https://glygen.org/protein/Q08AU7", "", "", "", "" ], [ "10227", "Protein", "NP_001298023", "https://glygen.org/protein/Q5EBH1", "", "", "", "" ], [ "10227", "Protein", "NP_899004", "https://glygen.org/protein/Q80YU0", "", "", "", "" ], [ "10227", "Protein", "NP_001038995", "https://glygen.org/protein/Q5SRT8", "", "", "", "" ], [ "10227", "Protein", "NP_035536", "https://glygen.org/protein/P70414", "", "", "", "" ], [ "10227", "Protein", "NP_032437", "https://glygen.org/protein/P70412", "", "", "", "" ], [ "10227", "Protein", "XP_006507673", "https://glygen.org/protein/A0A0U1RPG8", "", "", "", "" ], [ "10227", "Protein", "NP_056551", "https://glygen.org/protein/P70419", "", "", "", "" ], [ "10227", "Protein", "NP_068361", "https://glygen.org/protein/Q9EP78", "", "", "", "" ], [ "10227", "Protein", "NP_444452", "https://glygen.org/protein/Q9EP79", "", "", "", "" ], [ "10227", "Protein", "NP_001240786", "https://glygen.org/protein/Q3URK3", "", "", "", "" ], [ "10227", "Protein", "NP_598510", "https://glygen.org/protein/Q9EP72", "", "", "", "" ], [ "10227", "Protein", "NP_068693", "https://glygen.org/protein/Q9EP73", "", "", "", "" ], [ "10227", "Protein", "NP_001159880", "https://glygen.org/protein/Q9EP71", "", "", "", "" ], [ "10227", "Protein", "NP_001191262", "https://glygen.org/protein/Q9EP75", "", "", "", "" ], [ "10227", "Protein", "NP_666529", "https://glygen.org/protein/Q8VF62", "", "", "", "" ], [ "10227", "Protein", "NP_001230191", "https://glygen.org/protein/S4R213", "", "", "", "" ], [ "10227", "Protein", "NP_001317978", "https://glygen.org/protein/P53702", "", "", "", "" ], [ "10227", "Protein", "NP_038899", "https://glygen.org/protein/O08911", "", "", "", "" ], [ "10227", "Protein", "NP_776126", "https://glygen.org/protein/Q80WC9", "", "", "", "" ], [ "10227", "Protein", "NP_001153876", "https://glygen.org/protein/O08912", "", "", "", "" ], [ "10227", "Protein", "NP_001263213", "https://glygen.org/protein/O08915", "", "", "", "" ], [ "10227", "Protein", "NP_034303", "https://glygen.org/protein/O08914", "", "", "", "" ], [ "10227", "Protein", "NP_032053", "https://glygen.org/protein/O08917", "", "", "", "" ], [ "10227", "Protein", "NP_001116202", "https://glygen.org/protein/Q80WC3", "", "", "", "" ], [ "10227", "Protein", "NP_031661", "https://glygen.org/protein/O08918", "", "", "", "" ], [ "10227", "Protein", "NP_796159", "https://glygen.org/protein/Q80WC1", "", "", "", "" ], [ "10227", "Protein", "NP_835456", "https://glygen.org/protein/Q80WC7", "", "", "", "" ], [ "10227", "Protein", "NP_001039019", "https://glygen.org/protein/Q9JHY4", "", "", "", "" ], [ "10227", "Protein", "XP_006540519", "https://glygen.org/protein/A0A3Q4EGJ1", "", "", "", "" ], [ "10227", "Protein", "NP_001032816", "https://glygen.org/protein/Q8BYW1", "", "", "", "" ], [ "10227", "Protein", "NP_001074647", "https://glygen.org/protein/G5E8Q8", "", "", "", "" ], [ "10227", "Protein", "NP_079852", "https://glygen.org/protein/Q66GT5", "", "", "", "" ], [ "10227", "Protein", "NP_033842", "https://glygen.org/protein/P50429", "", "", "", "" ], [ "10227", "Protein", "NP_950181", "https://glygen.org/protein/Q8BTJ4", "", "", "", "" ], [ "10227", "Protein", "NP_033319", "https://glygen.org/protein/P50427", "", "", "", "" ], [ "10227", "Protein", "NP_079599", "https://glygen.org/protein/P59708", "", "", "", "" ], [ "10227", "Protein", "NP_001028494", "https://glygen.org/protein/F8VQK3", "", "", "", "" ], [ "10227", "Protein", "NP_031757", "https://glygen.org/protein/Q9R1N9", "", "", "", "" ], [ "10227", "Protein", "NP_666977", "https://glygen.org/protein/A2AT96", "", "", "", "" ], [ "10227", "Protein", "NP_001156410", "https://glygen.org/protein/Q3V3Q4", "", "", "", "" ], [ "10227", "Protein", "NP_001278374", "https://glygen.org/protein/Q3V3Q7", "", "", "", "" ], [ "10227", "Protein", "NP_001281210", "https://glygen.org/protein/Q9D516", "", "", "", "" ], [ "10227", "Protein", "NP_443747", "https://glygen.org/protein/Q9D517", "", "", "", "" ], [ "10227", "Protein", "NP_083457", "https://glygen.org/protein/Q9D515", "", "", "", "" ], [ "10227", "Protein", "NP_083473", "https://glygen.org/protein/Q9D513", "", "", "", "" ], [ "10227", "Protein", "NP_083731", "https://glygen.org/protein/Q9D518", "", "", "", "" ], [ "10227", "Protein", "NP_001243188", "https://glygen.org/protein/Q9D519", "", "", "", "" ], [ "10227", "Protein", "NP_077139", "https://glygen.org/protein/Q8K2M0", "", "", "", "" ], [ "10227", "Protein", "NP_081599", "https://glygen.org/protein/Q8K2M3", "", "", "", "" ], [ "10227", "Protein", "NP_032818", "https://glygen.org/protein/P21661", "", "", "", "" ], [ "10227", "Protein", "NP_081152", "https://glygen.org/protein/A2RSY6", "", "", "", "" ], [ "10227", "Protein", "NP_766372", "https://glygen.org/protein/Q8CB67", "", "", "", "" ], [ "10227", "Protein", "NP_659121", "https://glygen.org/protein/Q8VC03", "", "", "", "" ], [ "10227", "Protein", "NP_659079", "https://glygen.org/protein/Q8VC04", "", "", "", "" ], [ "10227", "Protein", "NP_033552", "https://glygen.org/protein/P22727", "", "", "", "" ], [ "10227", "Protein", "NP_036066", "https://glygen.org/protein/Q8BGW1", "", "", "", "" ], [ "10227", "Protein", "NP_001292592", "https://glygen.org/protein/Q8BGW0", "", "", "", "" ], [ "10227", "Protein", "NP_542372", "https://glygen.org/protein/Q8BGW3", "", "", "", "" ], [ "10227", "Protein", "NP_001171283", "https://glygen.org/protein/Q8BGW2", "", "", "", "" ], [ "10227", "Protein", "NP_001029275", "https://glygen.org/protein/Q497P9", "", "", "", "" ], [ "10227", "Protein", "NP_780748", "https://glygen.org/protein/Q8BGW4", "", "", "", "" ], [ "10227", "Protein", "NP_848864", "https://glygen.org/protein/Q8BGW6", "", "", "", "" ], [ "10227", "Protein", "NP_001001444", "https://glygen.org/protein/Q8BGW9", "", "", "", "" ], [ "10227", "Protein", "NP_001287886", "https://glygen.org/protein/Q8BGW8", "", "", "", "" ], [ "10227", "Protein", "NP_081192", "https://glygen.org/protein/Q497P3", "", "", "", "" ], [ "10227", "Protein", "NP_001028555", "https://glygen.org/protein/Q3U3I9", "", "", "", "" ], [ "10227", "Protein", "NP_766267", "https://glygen.org/protein/A2AAE1", "", "", "", "" ], [ "10227", "Protein", "NP_001001738", "https://glygen.org/protein/Q3TNL8", "", "", "", "" ] ] }, "readme": "Name\n - Mouse NCBI Protein Linkouts\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2020-03-20T15:55:38.335185\n\nModified on\n - 2022-09-26T09:05:56.501389\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Mouse NCBI Protein Linkouts contains mouse [taxid:10090] NCBI RefSeq accessions with their corresponding GlyGen protein detail page URLs. The dataset is formatted as per NCBI non-bib. linkouts guidelines where 10277 is the GlyGen's provider ID.\n - The RefSeq accessions are The dataset is derived from NCBI RefSeq Release 96, September 9, 2019\n\nDescription Domain\n Keywords\n - NCBI Protein Linkouts\n - RefSeq\n\n Pipeline Steps\n - Step-1: The script loads the RefSeq accessions, RefSeq protein name and based on the RefSeq-UniprotKB accession mapping generates the GlyGen protein detail page URLs. The script also enters the other fields as defined by the NCBI Protein Linkouts to generate a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_protein_proteinnames_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_protein_proteinnames_refseq.csv\n Name: mouse_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_protein_xref_refseq.csv\n Output Subdomain\n Name: mouse_protein_ncbi_linkouts.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_protein_ncbi_linkouts.csv\n Name: mouse_protein_ncbi_linkouts.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_protein_ncbi_linkouts.stat.csv\n\nFields\n Name: \"ProviderId\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"Database\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UID\"\n Description: \"NA\"\n Unique Values: \"19612\"\n Name: \"URL\"\n Description: \"NA\"\n Unique Values: \"19612\"\n Name: \"IconUrl\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UrlName\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"SubjectType\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"Attribute\"\n Description: \"NA\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/mouse_protein_ncbi_linkouts.csv" }