{ "bcoid": "GLY_000394", "title": "Rat Protein Names (NCBI RefSeq)", "description": "The Rat Protein Names (NCBI RefSeq) dataset contains rat [taxid:10116] protein names (primary and other ...", "filename": "rat_protein_proteinnames_refseq.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tag": [ "Protein Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q0HA29-1...", "NP_001041507..." ], [ "Q0HA29-1...", "NP_001041507..." ] ], "headers": [ "uniprotkb_ca...", "refseq_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "refseq_ac" }, { "type": "string", "label": "refseq_protein_name" } ], [ "Q0HA29-1", "NP_001041507", "nicotinamide/nicotinic acid mononucleotide adenylyltransferase 2" ], [ "Q0HA29-1", "NP_001041507", "nicotinamide mononucleotide adenylyltransferase 2; NMN adenylyltransferase 2; naMN adenylyltransferase 1; nicotinate-nucleotide adenylyltransferase 1; naMN adenylyltransferase 2; NMN/NaMN adenylyltransferase 2; nicotinate-nucleotide adenylyltransferase 2" ], [ "P30937-1", "NP_037168", "somatostatin receptor type 4" ], [ "P30937-1", "NP_037168", "Somatostatin receptor subtype 4 Rattus norvegicus Sprague-Dawley major hippocampal somatostatin receptor (SSTR4) mRNA; SS4R; SS4-R; SS-4-R" ], [ "O35152-1", "NP_062241", "BET1-like protein" ], [ "O35152-1", "NP_062241", "golgi SNARE, 15 kD; GOS-15; vesicle transport protein GOS15; golgi SNARE with a size of 15 kDa; Golgi soluble N-ethylmaleimide-sensitive factor attachment protein 15; blocked early in transport 1 homolog like" ], [ "P30936-1", "NP_598206", "somatostatin receptor type 3" ], [ "P30936-1", "NP_598206", "SS3R; SSR-28; SS3-R; SS-3-R; somatostatin receptor 28; somatostatin receptor subtype 3" ], [ "O35158-1", "NP_059054", "cell adhesion molecule-related/down-regulated by oncogenes precursor" ], [ "O35158-1", "NP_059054", "immunoglobulin superfamily member; cell adhesion molecule-related/down-regulated by oncogenes; Cdon homolog" ], [ "P02764-1", "NP_445740", "alpha-1-acid glycoprotein precursor" ], [ "P02764-1", "NP_445740", "alpha-1-acid glycoprotein" ], [ "P02767-1", "NP_036813", "transthyretin precursor" ], [ "P02767-1", "NP_036813", "prealbumin, amyloidosis type I" ], [ "D4A4W8-1", "XP_017444362", "T-box transcription factor T isoform X1" ], [ "D4A4W0-1", "NP_001000252", "olfactory receptor Olr338" ], [ "D4A4W0-1", "NP_001000252", "olfactory receptor gene Olr338; olfactory receptor 338" ], [ "D4A4W2-1", "NP_001178849", "multidrug and toxin extrusion protein 2" ], [ "D4A4W2-1", "NP_001178849", "solute carrier family 47 (multidrug and toxin extrusion), member 2" ], [ "D4A4W4-1", "NP_001102458", "epoxide hydrolase 3" ], [ "D4A4W4-1", "NP_001102458", "abhydrolase domain containing 9" ], [ "P01237-1", "NP_036761", "prolactin precursor" ], [ "P01237-1", "NP_036761", "prolactin family 1, subfamily a, member 1; growth hormone a1" ], [ "P01230-1", "NP_001029147", "lutropin subunit beta isoform 2 precursor" ], [ "P01230-1", "NP_001029147", "lutropin subunit beta; LH-B; LSH-B; LSH-beta; lutropin beta chain; luteinizing hormone beta polypeptide; Luteinizing hormone (lutropin) subunit beta; luteinizing hormone beta subunit" ], [ "P09006-1", "NP_113719", "serine protease inhibitor A3N precursor" ], [ "P09006-1", "NP_113719", "serine protease inhibitor 2c; serine protease inhibitor A3N; serpina3n-like protein; SPI-3; serpin A3N; serine protease inhibitor 3; contrapsin-like protease inhibitor 6" ], [ "Q9JHY1-1", "NP_446248", "junctional adhesion molecule A precursor" ], [ "Q9JHY1-1", "NP_446248", "junctional adhesion molecule A; JAM-1; JAM-A; junctional adhesion molecule 1" ], [ "Q9JHY2-1", "NP_075237", "sideroflexin-3" ], [ "Q9JHY2-1", "NP_075237", "tricarboxylate carrier-like protein; solute carrier family 64 member 3" ], [ "Q9JHY7-1", "NP_071610", "baculoviral IAP repeat-containing protein 5" ], [ "Q9JHY7-1", "NP_071610", "apoptosis inhibitor survivin" ], [ "Q9WU49-1", "NP_690003", "calcium-regulated heat stable protein 1" ], [ "Q9WU49-1", "NP_690003", "calcium-regulated heat-stable protein (24kD); calcium-regulated heat-stable protein of 24 kDa" ], [ "F1MAA4-1", "XP_006239308", "polyamine-transporting ATPase 13A2 isoform X1" ], [ "A0A8I5Y6V4-1", "NP_001102559", "myb/SANT-like DNA-binding domain-containing protein 1" ], [ "A0A8I5Y6V4-1", "NP_001102559", "Myb/SANT-like DNA-binding domain containing 1" ], [ "Q9R1N3-1", "NP_001257790", "sodium bicarbonate cotransporter 3 isoform 3" ], [ "Q9R1N3-1", "NP_001257790", "sodium bicarbonate cotransporter 3; NBC-like protein; electroneutral sodium bicarbonate cotransporter 1; solute carrier family 4, sodium bicarbonate cotransporter, member 7; solute carrier family 4 sodium bicarbonate cotransporter member 7 variant NBCn1-J; solute carrier family 4 sodium bicarbonate cotransporter member 7 variant NBCn1-I; solute carrier family 4 sodium bicarbonate cotransporter member 7 variant NBCn1-G" ], [ "D3ZFP5-1", "NP_001103108", "Protein RoBo-1-like precursor" ], [ "D3ZFP4-1", "NP_001178734", "DNA replication licensing factor MCM3" ], [ "D3ZFP4-1", "NP_001178734", "minichromosome maintenance deficient 3" ], [ "D3ZFP7-1", "NP_001099755", "protein inscuteable homolog" ], [ "D3ZFP7-1", "NP_001099755", "inscuteable homolog" ], [ "D3ZFP6-1", "XP_218829", "treslin isoform X1" ], [ "D3ZFP1-1", "NP_001128013", "integral membrane protein GPR137C" ], [ "D4A131-1", "NP_001102224", "39S ribosomal protein L4, mitochondrial" ], [ "D4A138-1", "NP_001099415", "nanos homolog 3" ], [ "A0A8I6ALX9-1", "NP_001333290", "similar to Gpd1l protein isoform 1" ], [ "A6KSB3-1", "NP_001009385", "apolipoprotein N precursor" ], [ "D3ZCS5-1", "NP_001099300", "crossover junction endonuclease EME1" ], [ "D3ZCS5-1", "NP_001099300", "essential meiotic endonuclease 1 homolog 1" ], [ "D3ZCS4-1", "NP_001178638", "ras GTPase-activating-like protein IQGAP3" ], [ "D3ZCS6-1", "NP_001099321", "proton channel OTOP2" ], [ "D3ZCS3-1", "NP_001178812", "poly(rC)-binding protein 4" ], [ "D3ZCS9-1", "NP_001127979", "5-hydroxyisourate hydrolase" ], [ "Q9JIL3-1", "NP_445864", "interleukin enhancer-binding factor 3" ], [ "Q9JIL3-1", "NP_445864", "M phase phosphoprotein 4" ], [ "Q6P5P5-1", "NP_001009617", "mesoderm-specific transcript homolog protein" ], [ "Q6P5P5-1", "NP_001009617", "mesoderm specific transcript homolog" ], [ "Q6P5P3-1", "NP_001007694", "tetratricopeptide repeat protein 9C" ], [ "Q6P5P3-1", "NP_001007694", "TPR repeat protein 9C; TPR domain containing protein RGD1359253" ], [ "D3ZXJ0-1", "NP_001099395", "matrix metalloproteinase-17 precursor" ], [ "D3ZXJ0-1", "NP_001099395", "matrix metalloproteinase 17" ], [ "D3ZXJ5-1", "NP_001101004", "elongation factor-like GTPase 1" ], [ "D3ZXJ5-1", "NP_001101004", "elongation factor Tu GTP-binding domain-containing protein 1; elongation factor Tu GTP binding domain containing 1" ], [ "A0A0G2JVZ2-1", "NP_001165596", "T-cell leukemia homeobox protein 2" ], [ "Q9QYH7-1", "NP_067701", "appetite-regulating hormone preproprotein" ], [ "Q9QYH7-1", "NP_067701", "appetite-regulating hormone; motilin-related peptide; growth hormone secretagogue; growth hormone-releasing peptide; ghrelin/obestatin prepropeptide" ], [ "Q67ER9-1", "NP_001074374", "taste receptor type 2 member 39" ], [ "Q67ER9-1", "NP_001074374", "putative taste receptor T2R32; T2R39; taste receptor type 2 member 32; taste receptor, type 2, member 39" ], [ "D3ZT68-1", "NP_001101853", "transcription factor COE2" ], [ "D3ZT68-1", "NP_001101853", "early B-cell factor 2" ], [ "D3ZT64-1", "NP_001103015", "autophagy-related protein 2 homolog A" ], [ "D3ZT64-1", "NP_001103015", "ATG2 autophagy related 2 homolog A" ], [ "D3ZT66-1", "NP_001000042", "olfactory receptor Olr1569" ], [ "D3ZT66-1", "NP_001000042", "olfactory receptor gene Olr1569; olfactory receptor 1569" ], [ "D4AE80-1", "NP_001178760", "mRNA-decapping enzyme 1A isoform 1" ], [ "D4AE80-1", "NP_001178760", "mRNA-decapping enzyme 1A; test2" ], [ "P97613-1", "NP_071786", "securin" ], [ "P97613-1", "NP_071786", "pituitary tumor-transforming gene 1 protein; Pituitary tumor transforming; pituitary tumor-transforming 1" ], [ "P43219-1", "NP_036846", "gastric inhibitory polypeptide receptor precursor" ], [ "P43219-1", "NP_036846", "GIP-R; glucose-dependent insulinotropic polypeptide receptor; gastric inhibitory peptide receptor" ] ] }, "readme": "Name\n - Rat Protein Names (NCBI RefSeq)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2020-03-15T13:32:44.009025\n\nModified on\n - 2022-09-26T09:05:27.607527\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Not Applicable []\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Names (NCBI RefSeq) dataset contains rat [taxid:10116] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - protein names\n - NCBI RefSeq\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/rat_protein_xref_refseq.csv\n Output Subdomain\n Name: rat_protein_proteinnames_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/rat_protein_proteinnames_refseq.csv\n Name: rat_protein_proteinnames_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/rat_protein_proteinnames_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"12761\"\n Name: \"refseq_ac\"\n Description: \"Accession in the NCBI RefSeq database\"\n Unique Values: \"12751\"\n Name: \"refseq_protein_name\"\n Description: \"Name of the protein in NCBI RefSeq database\"\n Unique Values: \"22418\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/rat_protein_proteinnames_refseq.csv" }