{ "bcoid": "GLY_000392", "title": "Human Protein Names (NCBI RefSeq)", "description": "The Human Protein Names (NCBI RefSeq) dataset contains human [taxid:9606] protein names (primary and ...", "filename": "human_protein_proteinnames_refseq.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tag": [ "Protein Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30613-1...", "NP_000289..." ], [ "P30613-1...", "NP_000289..." ] ], "headers": [ "uniprotkb_ca...", "refseq_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "refseq_ac" }, { "type": "string", "label": "refseq_protein_name" } ], [ "P30613-1", "NP_000289", "pyruvate kinase PKLR isoform 1" ], [ "P30613-1", "NP_000289", "pyruvate kinase type L; pyruvate kinase, liver and blood cell; pyruvate kinase 1; pyruvate kinase isozyme R/L; R-type/L-type pyruvate kinase; red cell/liver pyruvate kinase; pyruvate kinase isozymes R/L; pyruvate kinase isozymes L/R; pyruvate kinase PKLR; pyruvate kinase, liver and RBC" ], [ "Q96J66-1", "NP_115972", "ATP-binding cassette sub-family C member 11 isoform a" ], [ "Q96J66-1", "NP_115972", "multi-resistance protein 8; ATP-binding cassette transporter MRP8; ATP-binding cassette protein C11; ATP-binding cassette transporter sub-family C member 11; ATP-binding cassette sub-family C member 11; multidrug resistance-associated protein 8; ATP-binding cassette, sub-family C (CFTR/MRP), member 11" ], [ "Q96J65-1", "NP_150229", "ATP-binding cassette sub-family C member 12 isoform 1" ], [ "Q96J65-1", "NP_150229", "multidrug resistance-associated protein 9; ATP-binding cassette transporter sub-family C member 12; ATP-binding cassette sub-family C member 12; ATP-binding cassette, sub-family C (CFTR/MRP), member 12" ], [ "P40424-1", "NP_001191892", "pre-B-cell leukemia transcription factor 1 isoform 3" ], [ "P40424-1", "NP_001191892", "pre-B-cell leukemia transcription factor 1; homeobox protein PRL; homeobox protein PBX1; pre-B-cell leukemia homeobox 1" ], [ "P40425-1", "NP_002577", "pre-B-cell leukemia transcription factor 2" ], [ "P40425-1", "NP_002577", "homeobox 12; homeobox protein PBX2; XXbac-BPG300A18.13; pre-B-cell leukemia homeobox 2" ], [ "P40426-1", "NP_001128250", "pre-B-cell leukemia transcription factor 3 isoform 2" ], [ "P40426-1", "NP_001128250", "pre-B-cell leukemia transcription factor 3; homeobox protein PBX3; pre-B-cell leukemia homeobox 3" ], [ "P40429-1", "NP_001257420", "large ribosomal subunit protein uL13 isoform 2" ], [ "P40429-1", "NP_001257420", "tissue specific transplantation antigen 1; 60S ribosomal protein L13a; 23 kDa highly basic protein; large ribosomal subunit protein uL13; epididymis secretory sperm binding protein; highly basic protein 23 kDa" ], [ "Q9H2I8-1", "NP_114413", "leucine-rich melanocyte differentiation-associated protein isoform 2" ], [ "Q9H2I8-1", "NP_114413", "leucine-rich repeat-containing protein C10orf11; leucine-rich melanocyte differentiation-associated protein" ], [ "H0YL14-1", "NP_001243455", "transmembrane protein 250" ], [ "H0YL14-1", "NP_001243455", "herpes virus UL25-binding protein; protein C9orf69" ], [ "Q5VVP1-1", "NP_001138668", "spermatogenesis-associated protein 31A6" ], [ "Q5VVP1-1", "NP_001138668", "family with sequence similarity 75, member A6" ], [ "Q8N865-1", "NP_620166", "sperm-associated microtubule inner protein 4" ], [ "Q8N865-1", "NP_620166", "uncharacterized protein C7orf31; sperm associated microtubule inner protein 4" ], [ "A6NIR3-1", "NP_001137472", "arf-GAP with GTPase, ANK repeat and PH domain-containing protein 5" ], [ "A6NIR3-1", "NP_001137472", "centaurin, gamma-like family, member 2; AGAP-5" ], [ "Q86VY4-1", "NP_277047", "testis-specific Y-encoded-like protein 5" ], [ "Q86VY4-1", "NP_277047", "TSPY-like protein 5" ], [ "Q86VY9-1", "NP_001245205", "transmembrane protein 200A" ], [ "Q86VY9-1", "NP_001245205", "two transmembrane C" ], [ "Q9Y5S9-1", "NP_005096", "RNA-binding protein 8A" ], [ "Q9Y5S9-1", "NP_005096", "binder of OVCA1-1; ribonucleoprotein RBM8; RNA binding motif protein 8B; BOV-1; RNA-binding protein Y14; ribonucleoprotein RBM8A; exon junction complex core component Y14" ], [ "P19075-1", "NP_004607", "tetraspanin-8" ], [ "P19075-1", "NP_004607", "transmembrane 4 superfamily member 3; tumor-associated antigen CO-029; tspan-8" ], [ "Q99519-1", "NP_000425", "sialidase-1 precursor" ], [ "Q99519-1", "NP_000425", "exo-alpha-sialidase; lysosomal sialidase; N-acetyl-alpha-neuraminidase 1; acetylneuraminyl hydrolase; G9 sialidase; sialidase 1 (lysosomal sialidase)" ], [ "O15417-1", "NP_001073964", "trinucleotide repeat-containing gene 18 protein" ], [ "O15417-1", "NP_001073964", "long CAG trinucleotide repeat-containing gene 79 protein" ], [ "Q96RU7-1", "NP_001288117", "tribbles homolog 3 isoform 1" ], [ "Q96RU7-1", "NP_001288117", "p65-interacting inhibitor of NF-kappaB; neuronal cell death inducible putative kinase; TRB-3; p65-interacting inhibitor of NF-kappa-B; tribbles homolog 3" ], [ "Q96RU3-1", "NP_055848", "formin-binding protein 1 isoform 1" ], [ "Q96RU3-1", "NP_055848", "formin-binding protein 17" ], [ "Q96RU2-1", "NP_001333187", "ubiquitin carboxyl-terminal hydrolase 28 isoform h" ], [ "Q96RU2-1", "NP_001333187", "ubiquitin thioesterase 28; deubiquitinating enzyme 28; ubiquitin-specific-processing protease 28; ubiquitin thiolesterase 28" ], [ "Q96RU8-1", "NP_001269914", "tribbles homolog 1 isoform 2" ], [ "Q96RU8-1", "NP_001269914", "G-protein-coupled receptor induced protein; phosphoprotein regulated by mitogenic pathways; tribbles-like protein 1; G-protein-coupled receptor-induced protein 2; G-protein-coupled receptor-induced gene 2 protein; tribbles homolog 1" ], [ "Q6ZRV2-1", "NP_940890", "protein FAM83H" ], [ "P16520-1", "NP_001284500", "guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 isoform 2" ], [ "P16520-1", "NP_001284500", "guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 3; GTP-binding regulatory protein beta-3 chain; transducin beta chain 3; G protein, beta-3 subunit; guanine nucleotide binding protein (G protein), beta polypeptide 3; hypertension associated protein; heterotrimeric guanine nucleotide-binding protein 2D" ], [ "Q8NCJ5-1", "NP_116229", "SPRY domain-containing protein 3" ], [ "Q9Y296-1", "NP_001305415", "trafficking protein particle complex subunit 4 isoform 2" ], [ "Q9Y296-1", "NP_001305415", "TRS23 homolog; hematopoietic stem/progenitor cell protein 172; trafficking protein particle complex 4" ], [ "Q9Y297-1", "NP_003930", "F-box/WD repeat-containing protein 1A isoform 2" ], [ "Q9Y297-1", "NP_003930", "beta-TrCP1; F-box/WD repeat-containing protein 1A; E3RSIkappaB; pIkappaBalpha-E3 receptor subunit; epididymis tissue protein Li 2a; F-box and WD repeats protein beta-TrCP; F-box and WD-repeat protein 1B" ], [ "Q9Y294-1", "NP_054753", "histone chaperone ASF1A" ], [ "Q9Y294-1", "NP_054753", "ASF1 anti-silencing function 1 homolog A; CCG1-interacting factor A; hCIA; hAsf1; hAsf1a; anti-silencing function protein 1 homolog A" ], [ "Q9Y295-1", "NP_004138", "developmentally-regulated GTP-binding protein 1" ], [ "Q9Y295-1", "NP_004138", "neural precursor cell expressed, developmentally down-regulated 3; DRG-1; NEDD-3; neural precursor cell expressed developmentally down-regulated protein 3; TRAFAC GTPase DRG1; translation factor GTPase DRG1" ], [ "Q6ICB4-1", "NP_001002034", "sesquipedalian-2" ], [ "Q6ICB4-1", "NP_001002034", "27 kDa inositol polyphosphate phosphatase interacting protein B; inositol polyphosphate phosphatase-interacting protein B; family with sequence similarity 109 member B" ], [ "Q6ICB0-1", "NP_056519", "desumoylating isopeptidase 1" ], [ "Q6ICB0-1", "NP_056519", "family with sequence similarity 152, member B; PPPDE peptidase domain-containing protein 2; PPPDE peptidase domain containing 2; desumoylating isopeptidase 2; polyubiquitinated substrate transporter" ], [ "P17693-1", "NP_002118", "HLA class I histocompatibility antigen, alpha chain G isoform 2 precursor" ], [ "P17693-1", "NP_002118", "HLA-G histocompatibility antigen, class I, G; HLA class I histocompatibility antigen, alpha chain G; b2 microglobulin; MHC class I antigen G; HLA G antigen; mutant MHC class I antigen; MHC class Ib antigen; mutant MHC class Ib antigen; MHC class I protein" ], [ "O00507-1", "NP_004645", "probable ubiquitin carboxyl-terminal hydrolase FAF-Y" ], [ "O00507-1", "NP_004645", "ubiquitin specific peptidase 9, Y-linked (fat facets-like, Drosophila); ubiquitin thiolesterase FAF-Y; ubiquitin-specific processing protease FAF-Y; deubiquitinating enzyme FAF-Y; ubiquitin thioesterase FAF-Y; fat facets protein-related, Y-linked; ubiquitin-specific protease 9, Y chromosome; azoospermia factor A" ], [ "O00505-1", "NP_002258", "importin subunit alpha-4" ], [ "O00505-1", "NP_002258", "importin alpha 4; importin subunit alpha-3; importin alpha-3; qip2; SRP1-gamma; importin alpha Q2; karyopherin alpha 3 (importin alpha 4)" ], [ "O00501-1", "NP_001124333", "claudin-5 isoform 1" ], [ "O00501-1", "NP_001124333", "transmembrane protein deleted in velocardiofacial syndrome; transmembrane protein deleted in VCFS" ], [ "Q8IYD2-1", "NP_001258792", "kelch domain-containing protein 8A" ], [ "Q8IYD2-1", "NP_001258792", "S-delta-E1; substitute for delta-EGFR expression 1" ], [ "Q8IYD1-1", "NP_060564", "eukaryotic peptide chain release factor GTP-binding subunit ERF3B" ], [ "Q8IYD1-1", "NP_060564", "eukaryotic peptide chain release factor subunit 3b" ], [ "Q8IYD9-1", "NP_001275909", "lung adenoma susceptibility protein 2 isoform a" ], [ "Q8IYD9-1", "NP_001275909", "lung adenoma susceptibility protein 2" ], [ "Q8IYD8-1", "NP_001295062", "Fanconi anemia group M protein isoform 2" ], [ "Q8IYD8-1", "NP_001295062", "fanconi anemia group M protein; protein Hef ortholog; ATP-dependent RNA helicase FANCM; fanconi anemia-associated polypeptide of 250 kDa; Fanconi anemia complementation group M" ], [ "Q9H0H3-1", "NP_071925", "kelch-like protein 25" ], [ "Q9H0H3-1", "NP_071925", "ectodermal-neural cortex 2; ectoderm-neural cortex protein 2; BTB/POZ KELCH domain protein; kelch-like 25" ], [ "Q8IVD9-1", "NP_056147", "nudC domain-containing protein 3" ], [ "Q8IVD9-1", "NP_056147", "NudC-like protein" ], [ "P24903-1", "NP_000765", "cytochrome P450 2F1" ], [ "P24903-1", "NP_000765", "microsomal monooxygenase; xenobiotic monooxygenase; flavoprotein-linked monooxygenase; cytochrome P450, subfamily IIF, polypeptide 1; cytochrome P450, family 2, subfamily F, polypeptide 1" ], [ "Q5M9N0-1", "NP_001036249", "coiled-coil domain-containing protein 158 isoform 2" ], [ "Q5M9N0-1", "NP_001036249", "coiled-coil domain-containing protein 158" ] ] }, "readme": "Name\n - Human Protein Names (NCBI RefSeq)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2020-03-15T13:26:46.282740\n\nModified on\n - 2022-09-26T09:05:27.635223\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Names (NCBI RefSeq) dataset contains human [taxid:9606] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - protein names\n - NCBI RefSeq\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_protein_xref_refseq.csv\n Output Subdomain\n Name: human_protein_proteinnames_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_protein_proteinnames_refseq.csv\n Name: human_protein_proteinnames_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_protein_proteinnames_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"18696\"\n Name: \"refseq_ac\"\n Description: \"Accession in the NCBI RefSeq database\"\n Unique Values: \"18645\"\n Name: \"refseq_protein_name\"\n Description: \"Name of the protein in NCBI RefSeq database\"\n Unique Values: \"35769\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/human_protein_proteinnames_refseq.csv" }