{ "bcoid": "GLY_000335", "title": "HCV1a Glycosylation Sites (Literature + UniCarbKB)", "description": "The HCV1a [TaxID:1108] glycosylations sites dataset contains glycosylation sites experimentally reported ...", "filename": "hcv1a_proteoform_glycosylation_sites_literature.csv", "filetype": "csv", "categories": { "species": [ "Hepatitis c virus (isolate h)" ], "molecule": [ "Proteoform" ], "tag": [ "Glycosylation Sites" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P27958-1...", "448..." ], [ "P27958-1...", "448..." ] ], "headers": [ "uniprotkb_ca...", "glycosylatio..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "uniprotkb_ac" }, { "type": "string", "label": "evidence" }, { "type": "string", "label": "genbank_accession_nucleotide_from_paper" }, { "type": "string", "label": "genbank_accession_nucleotide_version_from_paper" }, { "type": "string", "label": "genbank_accession_protein_version" }, { "type": "string", "label": "protein_name_genbank" }, { "type": "string", "label": "protein_rec_name_uniprot" }, { "type": "string", "label": "tax_id_uniprotkb_ac" }, { "type": "string", "label": "organism" }, { "type": "string", "label": "strain_uniprotkb_ac" }, { "type": "string", "label": "glycosylation_site_in_paper" }, { "type": "string", "label": "link_sugar" }, { "type": "string", "label": "glycan_composition_in_paper" }, { "type": "string", "label": "glycan_composition_format_1" }, { "type": "string", "label": "glycan_composition_format_2" }, { "type": "string", "label": "core_type" }, { "type": "string", "label": "glycoCT" }, { "type": "string", "label": "oxford_notation" }, { "type": "string", "label": "abundance_from_paper" }, { "type": "string", "label": "glycopeptide_sequence" }, { "type": "string", "label": "abundance_normalized" }, { "type": "string", "label": "predominant_glycan_species" }, { "type": "string", "label": "biological_source" }, { "type": "string", "label": "source_cell_line_cellosaurus_name" }, { "type": "string", "label": "source_cell_line_cellosaurus_id" }, { "type": "string", "label": "analyte" }, { "type": "string", "label": "mass_glycopeptide" }, { "type": "string", "label": "chromatography_glycopeptide" }, { "type": "string", "label": "analyzer_glycopeptide" }, { "type": "string", "label": "sample_preparation_glycopeptide" }, { "type": "string", "label": "glycosidase_treatment_glycopeptide" }, { "type": "string", "label": "lectin_characterisation_glycopeptide" }, { "type": "string", "label": "fragmentation_glycopeptide" }, { "type": "string", "label": "ionization_glycopeptide" }, { "type": "string", "label": "notes" }, { "type": "string", "label": "entry_version_uniprot" }, { "type": "string", "label": "entry_modification_date_refseq" }, { "type": "string", "label": "n_sequon" }, { "type": "string", "label": "n_sequon_type" }, { "type": "string", "label": "start_pos" }, { "type": "string", "label": "end_pos" }, { "type": "string", "label": "start_aa" }, { "type": "string", "label": "end_aa" }, { "type": "string", "label": "site_seq" } ], [ "P27958-1", "448", "Asn", "G92050GC", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man4", "Hex4HexNAc2", "HexNAc2Hex4dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M4", "0.61", "FNSSGCPER", "14.59", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2106.763", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G92050GC", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man4", "Hex4HexNAc2", "HexNAc2Hex4dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M4", "0.61", "FNSSGCPER", "14.59", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2106.763", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G92050GC", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man4", "Hex4HexNAc2", "HexNAc2Hex4dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M4", "0.61", "FNSSGCPER", "14.59", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2106.763", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G02815KT", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man5", "Hex5HexNAc2", "HexNAc2Hex5dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M5", "0.31", "FNSSGCPER", "7.42", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2268.8", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G02815KT", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man5", "Hex5HexNAc2", "HexNAc2Hex5dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M5", "0.31", "FNSSGCPER", "7.42", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2268.8", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G02815KT", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man5", "Hex5HexNAc2", "HexNAc2Hex5dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M5", "0.31", "FNSSGCPER", "7.42", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2268.8", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G41247ZX", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man6", "Hex6HexNAc2", "HexNAc2Hex6dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M6", "1", "FNSSGCPER", "23.92", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2430.855", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G41247ZX", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man6", "Hex6HexNAc2", "HexNAc2Hex6dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M6", "1", "FNSSGCPER", "23.92", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2430.855", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G41247ZX", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man6", "Hex6HexNAc2", "HexNAc2Hex6dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M6", "1", "FNSSGCPER", "23.92", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2430.855", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G31852PQ", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.57", "FNSSGCPER", "13.64", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2592.91", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G31852PQ", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.57", "FNSSGCPER", "13.64", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2592.91", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G31852PQ", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.57", "FNSSGCPER", "13.64", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2592.91", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G62765YT", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.54", "FNSSGCPER", "12.92", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2754.98", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G62765YT", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.54", "FNSSGCPER", "12.92", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2754.98", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G62765YT", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.54", "FNSSGCPER", "12.92", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2754.98", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G80920RR", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.42", "FNSSGCPER", "10.05", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2917.015", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G80920RR", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.42", "FNSSGCPER", "10.05", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2917.015", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G80920RR", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.42", "FNSSGCPER", "10.05", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "2917.015", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G83460ZZ", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "0.38", "FNSSGCPER", "9.09", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3079.045", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G83460ZZ", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "0.38", "FNSSGCPER", "9.09", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3079.045", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G83460ZZ", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "0.38", "FNSSGCPER", "9.09", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3079.045", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G58087IP", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.2", "FNSSGCPER", "4.78", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3241.115", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G58087IP", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.2", "FNSSGCPER", "4.78", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3241.115", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G58087IP", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.2", "FNSSGCPER", "4.78", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3241.115", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G59324HL", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.15", "FNSSGCPER", "3.59", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3403.181", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G59324HL", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.15", "FNSSGCPER", "3.59", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3403.181", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "448", "Asn", "G59324HL", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.15", "FNSSGCPER", "3.59", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3403.181", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS", "448", "448", "Asn", "Asn", "N" ], [ "P27958-1", "576", "Asn", "G31852PQ", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.6", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "29.41", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4401.825", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT", "576", "576", "Asn", "Asn", "N" ], [ "P27958-1", "576", "Asn", "G31852PQ", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.6", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "29.41", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4401.825", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT", "576", "576", "Asn", "Asn", "N" ], [ "P27958-1", "576", "Asn", "G31852PQ", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.6", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "29.41", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4401.825", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT", "576", "576", "Asn", "Asn", "N" ], [ "P27958-1", "576", "Asn", "G62765YT", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "1", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "49.02", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4563.867", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT", "576", "576", "Asn", "Asn", "N" ], [ "P27958-1", "576", "Asn", "G62765YT", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "1", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "49.02", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4563.867", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT", "576", "576", "Asn", "Asn", "N" ], [ "P27958-1", "576", "Asn", "G62765YT", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "1", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "49.02", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4563.867", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT", "576", "576", "Asn", "Asn", "N" ], [ "P27958-1", "576", "Asn", "G80920RR", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.44", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "21.57", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4725.93", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT", "576", "576", "Asn", "Asn", "N" ], [ "P27958-1", "576", "Asn", "G80920RR", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.44", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "21.57", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4725.93", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT", "576", "576", "Asn", "Asn", "N" ], [ "P27958-1", "576", "Asn", "G80920RR", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.44", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "21.57", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4725.93", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT", "576", "576", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G02815KT", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man5", "Hex5HexNAc2", "HexNAc2Hex5dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M5", "0.54", "LWHYPCTINYTIFK", "11.49", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3071.46", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G02815KT", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man5", "Hex5HexNAc2", "HexNAc2Hex5dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M5", "0.54", "LWHYPCTINYTIFK", "11.49", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3071.46", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G02815KT", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man5", "Hex5HexNAc2", "HexNAc2Hex5dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M5", "0.54", "LWHYPCTINYTIFK", "11.49", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3071.46", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G41247ZX", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man6", "Hex6HexNAc2", "HexNAc2Hex6dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M6", "1", "LWHYPCTINYTIFK", "21.28", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3233.523", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G41247ZX", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man6", "Hex6HexNAc2", "HexNAc2Hex6dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M6", "1", "LWHYPCTINYTIFK", "21.28", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3233.523", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G41247ZX", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man6", "Hex6HexNAc2", "HexNAc2Hex6dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M6", "1", "LWHYPCTINYTIFK", "21.28", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3233.523", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G31852PQ", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.65", "LWHYPCTINYTIFK", "13.83", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3395.487", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G31852PQ", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.65", "LWHYPCTINYTIFK", "13.83", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3395.487", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G31852PQ", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.65", "LWHYPCTINYTIFK", "13.83", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3395.487", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G62765YT", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.38", "LWHYPCTINYTIFK", "8.09", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3557.509", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G62765YT", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.38", "LWHYPCTINYTIFK", "8.09", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3557.509", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G62765YT", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.38", "LWHYPCTINYTIFK", "8.09", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3557.509", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G80920RR", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.52", "LWHYPCTINYTIFK", "11.06", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3719.503", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G80920RR", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.52", "LWHYPCTINYTIFK", "11.06", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3719.503", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G80920RR", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.52", "LWHYPCTINYTIFK", "11.06", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3719.503", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G83460ZZ", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "0.44", "LWHYPCTINYTIFK", "9.36", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3881.632", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G83460ZZ", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "0.44", "LWHYPCTINYTIFK", "9.36", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3881.632", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G83460ZZ", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "0.44", "LWHYPCTINYTIFK", "9.36", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3881.632", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G58087IP", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.7", "LWHYPCTINYTIFK", "14.89", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4043.664", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G58087IP", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.7", "LWHYPCTINYTIFK", "14.89", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4043.664", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G58087IP", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.7", "LWHYPCTINYTIFK", "14.89", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4043.664", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G59324HL", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.47", "LWHYPCTINYTIFK", "10", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4205.722", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G59324HL", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.47", "LWHYPCTINYTIFK", "10", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4205.722", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "623", "Asn", "G59324HL", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.47", "LWHYPCTINYTIFK", "10", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4205.722", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT", "623", "623", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G31852PQ", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.25", "LEAACNWTRGERCDLEDR", "7.46", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3676.497", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G31852PQ", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.25", "LEAACNWTRGERCDLEDR", "7.46", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3676.497", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G31852PQ", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.25", "LEAACNWTRGERCDLEDR", "7.46", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3676.497", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G62765YT", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.3", "LEAACNWTRGERCDLEDR", "8.96", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3838.589", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G62765YT", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.3", "LEAACNWTRGERCDLEDR", "8.96", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3838.589", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G62765YT", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.3", "LEAACNWTRGERCDLEDR", "8.96", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "3838.589", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G80920RR", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.7", "LEAACNWTRGERCDLEDR", "20.9", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4000.6", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G80920RR", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.7", "LEAACNWTRGERCDLEDR", "20.9", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4000.6", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G80920RR", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.7", "LEAACNWTRGERCDLEDR", "20.9", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4000.6", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G83460ZZ", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "1", "LEAACNWTRGERCDLEDR", "29.85", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4162.65", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G83460ZZ", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "1", "LEAACNWTRGERCDLEDR", "29.85", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4162.65", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G83460ZZ", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "1", "LEAACNWTRGERCDLEDR", "29.85", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4162.65", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G58087IP", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.45", "LEAACNWTRGERCDLEDR", "13.43", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4324.748", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G58087IP", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.45", "LEAACNWTRGERCDLEDR", "13.43", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4324.748", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G58087IP", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.45", "LEAACNWTRGERCDLEDR", "13.43", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4324.748", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G59324HL", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.65", "LEAACNWTRGERCDLEDR", "19.4", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4486.758", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G59324HL", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.65", "LEAACNWTRGERCDLEDR", "19.4", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4486.758", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "645", "Asn", "G59324HL", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.65", "LEAACNWTRGERCDLEDR", "19.4", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "4486.758", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT", "645", "645", "Asn", "Asn", "N" ], [ "P27958-1", "417", "Asn", "G28681TP", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "35", "GlcNAc", "Man3", "Hex3HexNAc2", "HexNAc2Hex3dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M3", "0.5", "INTNGSW", "12.08", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "1682.676", "HPLC", "Q-Tof hybrid", "Carboxymethylation |chymotryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. | the majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NGS", "NXS", "417", "417", "Asn", "Asn", "N" ], [ "P27958-1", "417", "Asn", "G28681TP", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "35", "GlcNAc", "Man3", "Hex3HexNAc2", "HexNAc2Hex3dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M3", "0.5", "INTNGSW", "12.08", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "1682.676", "HPLC", "Q-Tof hybrid", "Carboxymethylation |chymotryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. | the majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NGS", "NXS", "417", "417", "Asn", "Asn", "N" ], [ "P27958-1", "417", "Asn", "G28681TP", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "35", "GlcNAc", "Man3", "Hex3HexNAc2", "HexNAc2Hex3dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M3", "0.5", "INTNGSW", "12.08", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "1682.676", "HPLC", "Q-Tof hybrid", "Carboxymethylation |chymotryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. | the majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NGS", "NXS", "417", "417", "Asn", "Asn", "N" ], [ "P27958-1", "417", "Asn", "G92050GC", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "35", "GlcNAc", "Man4", "Hex4HexNAc2", "HexNAc2Hex4dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M4", "0.95", "INTNGSW", "22.95", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "1845.732", "HPLC", "Q-Tof hybrid", "Carboxymethylation |chymotryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. | the majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NGS", "NXS", "417", "417", "Asn", "Asn", "N" ], [ "P27958-1", "417", "Asn", "G92050GC", "N-linked", "protein_xref_glygen_ds", "GLY_000335", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "35", "GlcNAc", "Man4", "Hex4HexNAc2", "HexNAc2Hex4dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M4", "0.95", "INTNGSW", "22.95", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "1845.732", "HPLC", "Q-Tof hybrid", "Carboxymethylation |chymotryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. | the majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NGS", "NXS", "417", "417", "Asn", "Asn", "N" ], [ "P27958-1", "417", "Asn", "G92050GC", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLY_000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "35", "GlcNAc", "Man4", "Hex4HexNAc2", "HexNAc2Hex4dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M4", "0.95", "INTNGSW", "22.95", "high mannose glycans", "", "CHO", "CVCL_0213", "glycopeptide", "1845.732", "HPLC", "Q-Tof hybrid", "Carboxymethylation |chymotryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. | the majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NGS", "NXS", "417", "417", "Asn", "Asn", "N" ] ] }, "readme": "Name\n - HCV1a Glycosylation Sites (Literature + UniCarbKB)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2020-02-10T14:13:38.047090\n\nModified on\n - 2023-03-31T18:51:45.962Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Matthew Campbell [m.campbell2@griffith.edu.au]\n\nChecksum\n - \n\nUsability Domain\n - The HCV1a [TaxID:1108] glycosylations sites dataset contains glycosylation sites experimentally reported on Hepatitis C Virus 1a protein. The data was extracted from publication PMID:18187336. (Iacob RE, Perdivara I, Przybylski M, Tomer KB. Mass spectrometric characterization of glycosylation of hepatitis C virus E2 envelope glycoprotein reveals extended microheterogeneity of N-glycans. J Am Soc Mass Spectrom. 2008;19(3):428\u2013444. doi:10.1016/j.jasms.2007.11.022). The glycan compositions from publication [PMID:18187336] were assigned to GlyTouCan accessions by UniCarbKB. [https://academic.oup.com/nar/article/42/D1/D215/1052197 ,https://doi.org/10.1093/nar/gkt1128]\n\nDescription Domain\n Keywords\n - reported glycosylation\n - HCV\n\n Pipeline Steps\n - Step-1: 1) The data was extracted from the publications using supplemental material (Table 1,2,3). 2) The GenBank accession number (AF009606) retrieved from the paper was matched to the best hit UniProtKB Ac. (P27958) using the NCBI BLAST. 3) The glycan compositions provided by the paper were mapped to GlyTouCan Accession manually. 4) The source cell-line and mass-spectrometry data such as analyzer, chromatography, etc. were also extracted from the paper. 5) QC checks mapped the UniProtKB accessions to UniProtKB canonical accessions and checked the validity of amino acid and glycosite position on the .fasta sequence of the 2019-09 UniProtKB release for that protein.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycosylation_sites_lit_23090970_s2.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/compiled/glycosylation_sites_lit_23090970_s2.csv\n Name: glycosylation_sites_lit_23090970_s5.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/compiled/glycosylation_sites_lit_23090970_s5.csv\n Name: glycosylation_sites_lit_24190977_s5.cs\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/compiled/glycosylation_sites_lit_24190977_s5.cs\n Name: glycosylation_sites_lit_x_sx.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/compiled/glycosylation_sites_lit_x_sx.csv\n Name: hcv1a_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/compiled/hcv1a_proteoform_glycosylation_sites_literature.csv\n Name: sarscov1_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/compiled/sarscov1_proteoform_glycosylation_sites_literature.csv\n Name: n_sequon_info.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/misc/n_sequon_info.csv\n Name: sample_mapping.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/misc/sample_mapping.csv\n Name: cellosaurus.txt\n URI: https:/data.glygen.org/ln2downloads/cellosaurus/2024_01_31/cellosaurus.txt\n Output Subdomain\n Name: hcv1a_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/hcv1a_proteoform_glycosylation_sites_literature.csv\n Name: hcv1a_proteoform_glycosylation_sites_literature.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/hcv1a_proteoform_glycosylation_sites_literature.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"glycosylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where glycosylation is observed\"\n Unique Values: \"11\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"1\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"14\"\n Name: \"glycosylation_type\"\n Description: \"Type of glycosylation (N/O/C/S linked glycosylation)\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"3\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"3\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1\"\n Name: \"uniprotkb_ac\"\n Description: \"Accession assigned to the protein in the UniProtKB database\"\n Unique Values: \"1\"\n Name: \"evidence\"\n Description: \"NCBI PubMed Id (PMID) or DOI (Digital Object Identifier) as evidence for the entry/annotation\"\n Unique Values: \"1\"\n Name: \"genbank_accession_nucleotide_from_paper\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"genbank_accession_nucleotide_version_from_paper\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"genbank_accession_protein_version\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"protein_name_genbank\"\n Description: \"Protein name from the GenBank database\"\n Unique Values: \"1\"\n Name: \"protein_rec_name_uniprot\"\n Description: \"Protein recommended name from UniProt\"\n Unique Values: \"1\"\n Name: \"tax_id_uniprotkb_ac\"\n Description: \"TaxID from UniProtKB\"\n Unique Values: \"1\"\n Name: \"organism\"\n Description: \"Name of the species\"\n Unique Values: \"1\"\n Name: \"strain_uniprotkb_ac\"\n Description: \"Strain of the virus from UniProtKB\"\n Unique Values: \"1\"\n Name: \"glycosylation_site_in_paper\"\n Description: \"Glycosylation site extracted in paper\"\n Unique Values: \"11\"\n Name: \"link_sugar\"\n Description: \"linked sugar\"\n Unique Values: \"1\"\n Name: \"glycan_composition_in_paper\"\n Description: \"Glycan composition in paper\"\n Unique Values: \"14\"\n Name: \"glycan_composition_format_1\"\n Description: \"Glycan composition in format 1\"\n Unique Values: \"14\"\n Name: \"glycan_composition_format_2\"\n Description: \"Glycan composition in format 2\"\n Unique Values: \"14\"\n Name: \"core_type\"\n Description: \"Core Type of the glycan\"\n Unique Values: \"2\"\n Name: \"glycoCT\"\n Description: \"GlycoCT format of the sequence\"\n Unique Values: \"1\"\n Name: \"oxford_notation\"\n Description: \"oxford notation of the glycan format\"\n Unique Values: \"14\"\n Name: \"abundance_from_paper\"\n Description: \"abundance of the glycan extracted from source literature\"\n Unique Values: \"42\"\n Name: \"glycopeptide_sequence\"\n Description: \"glycopeptide sequence\"\n Unique Values: \"14\"\n Name: \"abundance_normalized\"\n Description: \"Abundance ratio of the glycan from the total glycan pool.\"\n Unique Values: \"79\"\n Name: \"predominant_glycan_species\"\n Description: \"Dominant/most-abundant glycan species\"\n Unique Values: \"1\"\n Name: \"biological_source\"\n Description: \"biological source\"\n Unique Values: \"1\"\n Name: \"source_cell_line_cellosaurus_name\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"source_cell_line_cellosaurus_id\"\n Description: \"cellosaurus ID of the cell line\"\n Unique Values: \"1\"\n Name: \"analyte\"\n Description: \"Analyte\"\n Unique Values: \"1\"\n Name: \"mass_glycopeptide\"\n Description: \"Mass of the glycopeptide\"\n Unique Values: \"81\"\n Name: \"chromatography_glycopeptide\"\n Description: \"chromatography \"\n Unique Values: \"1\"\n Name: \"analyzer_glycopeptide\"\n Description: \"analyzer type for glycopeptide\"\n Unique Values: \"1\"\n Name: \"sample_preparation_glycopeptide\"\n Description: \"Sample prepartion of the glycopeptide\"\n Unique Values: \"2\"\n Name: \"glycosidase_treatment_glycopeptide\"\n Description: \"glycosidase treatment\"\n Unique Values: \"1\"\n Name: \"lectin_characterisation_glycopeptide\"\n Description: \"Characterization of the lectin\"\n Unique Values: \"1\"\n Name: \"fragmentation_glycopeptide\"\n Description: \"Fragmentation of the glycopeptide\"\n Unique Values: \"1\"\n Name: \"ionization_glycopeptide\"\n Description: \"ionization of the glycopeptide\"\n Unique Values: \"1\"\n Name: \"notes\"\n Description: \"Notes\"\n Unique Values: \"5\"\n Name: \"entry_version_uniprot\"\n Description: \"Entry version of the UniProtKB accession\"\n Unique Values: \"1\"\n Name: \"entry_modification_date_refseq\"\n Description: \"Modification date of the RefSeq\"\n Unique Values: \"1\"\n Name: \"n_sequon\"\n Description: \"\"\n Unique Values: \"8\"\n Name: \"n_sequon_type\"\n Description: \"\"\n Unique Values: \"2\"\n Name: \"start_pos\"\n Description: \"Start position of the gene on the chromosome\"\n Unique Values: \"11\"\n Name: \"end_pos\"\n Description: \"End position of the gene on the chromosome\"\n Unique Values: \"11\"\n Name: \"start_aa\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"end_aa\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"site_seq\"\n Description: \"\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/hcv1a_proteoform_glycosylation_sites_literature.csv" }