{ "bcoid": "GLY_000264", "title": "Rat Protein Citations (RefSeq)", "description": "The Rat Protein Citations (RefSeq) datasets contains rat [taxid:10116] UniProtKB accessions mapped to ...", "filename": "rat_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tag": [ "Protein Citations" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "D3ZS29-1...", "TNF-alpha up..." ], [ "D4A631-1...", "BIG1 is a bi..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "D3ZS29-1", "TNF-alpha up-regulates Nanog by activating NF-kappaB pathway to induce primary rat spinal cord astrocytes dedifferentiation.", "Life sciences", "2021 Dec 15", "Ding Z, Dai C, Shan W, Liu R, Lu W, Gao W, Zhang H, Huang W, Guan J, Yin Z", "protein_xref_pubmed", "34758295", "protein_xref_refseq", "NP_001094251" ], [ "D4A631-1", "BIG1 is a binding partner of myosin IXb and regulates its Rho-GTPase activating protein activity.", "The Journal of biological chemistry", "2005 Mar 18", "Saeki N, Tokuo H, Ikebe M", "protein_xref_pubmed", "15644318", "protein_xref_refseq", "NP_001263985" ], [ "Q9QYK2-1", "The coactivator PGC-1 is involved in the regulation of the liver carnitine palmitoyltransferase I gene expression by cAMP in combination with HNF4 alpha and cAMP-response element-binding protein (CREB).", "The Journal of biological chemistry", "2002 Oct 11", "Louet JF, Hayhurst G, Gonzalez FJ, Girard J, Decaux JF", "protein_xref_pubmed", "12107181", "protein_xref_refseq", "NP_112637" ], [ "Q99P85-1", "Hypoxia-Induced Mitogenic Factor Acts as a Nonclassical Ligand of Calcium-Sensing Receptor, Therapeutically Exploitable for Intermittent Hypoxia-Induced Pulmonary Hypertension.", "Hypertension (Dallas, Tex. : 1979)", "2017 May", "Zeng X, Zhu L, Xiao R, Liu B, Sun M, Liu F, Hao Q, Lu Y, Zhang J, Li J, Wang T, Wei X, Hu Q", "protein_xref_pubmed", "28348014", "protein_xref_refseq", "NP_445785" ], [ "P19491-1", "Mechanisms underlying TARP modulation of the GluA1/2-gamma8 AMPA receptor.", "Nature communications", "2022 Feb 8", "Herguedas B, Kohegyi BK, Dohrke JN, Watson JF, Zhang D, Ho H, Shaikh SA, Lape R, Krieger JM, Greger IH", "protein_xref_pubmed", "35136046", "protein_xref_refseq", "NP_001077280" ], [ "Q03351-1", "P75NTR Exacerbates SCI-induced Mitochondrial Damage and Neuronal Apoptosis Depending on NTRK3.", "Current neurovascular research", "2021", "Tan W, Dong L, Shi X, Tang Q, Jiang D", "protein_xref_pubmed", "34970951", "protein_xref_refseq", "NP_001257584" ], [ "P56932-1", "The protein phosphatase 2A regulatory subunits B'beta and B'delta mediate sustained TrkA neurotrophin receptor autophosphorylation and neuronal differentiation.", "Molecular and cellular biology", "2009 Feb", "Van Kanegan MJ, Strack S", "protein_xref_pubmed", "19029245", "protein_xref_refseq", "NP_653347" ], [ "Q6DGF8-1", "Expression of new loci associated with obesity in diet-induced obese rats: from genetics to physiology.", "Obesity (Silver Spring, Md.)", "2012 Feb", "Gutierrez-Aguilar R, Kim DH, Woods SC, Seeley RJ", "protein_xref_pubmed", "21779089", "protein_xref_refseq", "NP_001007749" ], [ "E5RQ38-1", "Knockdown of histone deacetylase 9 attenuates sepsis-induced myocardial injury and inflammatory response.", "Experimental animals", "2023-08-07", "Yang Long, Wu Chunxue, Cui Ying, Dong Shimin", "protein_xref_pubmed", "36927982", "protein_xref_refseq", "NP_001186974" ], [ "P04166-1", "Influence of point mutations on the flexibility of cytochrome b5: molecular dynamics simulations of holoproteins.", "Biopolymers", "2006 Oct 15", "Cheng Q, Benson DR, Rivera M, Kuczera K", "protein_xref_pubmed", "16807901", "protein_xref_refseq", "NP_085075" ], [ "Q641Y5-1", "ATG7-enhanced impaired autophagy exacerbates acute pancreatitis by promoting regulated necrosis via the miR-30b-5p/CAMKII pathway.", "Cell death & disease", "2022 Mar 7", "Ji L, Wang ZH, Zhang YH, Zhou Y, Tang DS, Yan CS, Ma JM, Fang K, Gao L, Ren NS, Cheng L, Guo XY, Sun B, Wang G", "protein_xref_pubmed", "35256590", "protein_xref_refseq", "NP_001012097" ], [ "P51577-1", "P2X4 Inhibition reduces microglia inflammation and apoptosis by NLRP3 and improves nervous system defects in rat brain trauma model.", "Journal of clinical neuroscience : official journal of the Neurosurgical Society of Australasia", "2022 May", "He W, Wang Q, Sha W, Wang L, Li D, Chen G", "protein_xref_pubmed", "35290938", "protein_xref_refseq", "NP_113782" ], [ "P12847-1", "METTL3 achieves lipopolysaccharide-induced myocardial injury via m6A-dependent stabilization of Myh3 mRNA.", "Biochimica et biophysica acta. Molecular cell research", "2023-10", "Gong Chengwu, Wu Jinlong, Li Hao, Luo Congcong, Ji Guangyu, Guan Xin, Liu Jichun, Wang Mingsong", "protein_xref_pubmed", "37245538", "protein_xref_refseq", "NP_036736" ], [ "O08878-1", "Effects of estrogen receptor \u03b2 or G protein-coupled receptor 30 activation on anxiety-like behaviors in relation to GABAergic transmission in stress-ovariectomized rats.", "Neuroscience letters", "2022-10-15", "Tongta Sushawadee, Daendee Suwaporn, Kalandakanond-Thongsong Sarinee", "protein_xref_pubmed", "36152742", "protein_xref_refseq", "NP_598257" ], [ "Q6MGB4-1", "Hyperglycemia-Induced Changes in ZIP7 and ZnT7 Expression Cause Zn(2+) Release From the Sarco(endo)plasmic Reticulum and Mediate ER Stress in the Heart.", "Diabetes", "2017 May", "Tuncay E, Bitirim VC, Durak A, Carrat GRJ, Taylor KM, Rutter GA, Turan B", "protein_xref_pubmed", "28232492", "protein_xref_refseq", "NP_001008885" ], [ "P62836-1", "miR-202 modulates the progression of neuropathic pain through targeting RAP1A.", "Journal of cellular biochemistry", "2019 Mar", "Fang B, Wei L, Dong K, Niu X, Sui X, Zhang H", "protein_xref_pubmed", "30520098", "protein_xref_refseq", "NP_001005765" ], [ "P63149-1", "Upregulation of ubiquitin conjugating enzyme E2B (Ube2b) ameliorates neuropathic pain by regulating Kcna2 (potassium voltage-gated channel subfamily A member 2) in primary afferent neurons.", "Bioengineered", "2021 Dec", "Peng Y, Zhang Q, Cheng H, Yan G, Xing C", "protein_xref_pubmed", "34632937", "protein_xref_refseq", "NP_112400" ], [ "Q5FVT6-1", "[KLF15/mTOR related proteins involved in effect of aerobic interval training on improving skeletal muscle lesions in rats with type 2 diabetes].", "Zhongguo ying yong sheng li xue za zhi = Zhongguo yingyong shenglixue zazhi = Chinese journal of applied physiology", "2022 Nov", "Liao ZX, Huang L, Zhu HZ, Zhu MJ", "protein_xref_pubmed", "37308416", "protein_xref_refseq", "NP_445988" ], [ "O70196-1", "Inhibition of Prolyl Oligopeptidase Restores Prohibitin 2 Levels in Psychosis Models: Relationship to Cognitive Deficits in Schizophrenia.", "International journal of molecular sciences", "2023-03-23", "Vila \u00c8lia, Pinacho Raquel, Prades Roger, Tarrag\u00f3 Teresa, Castro Elena, Munarriz-Cuezva Eva, Meana J Javier, Eugui-Anta Ania, Roldan M\u00f2nica, Vera-Montecinos Am\u00e9rica, Ramos Bel\u00e9n", "protein_xref_pubmed", "37046989", "protein_xref_refseq", "NP_112614" ], [ "Q923Y2-1", "Expression of trace amine-associated receptors in the Grueneberg ganglion.", "Chemical senses", "2007 Jul", "Fleischer J, Schwarzenbacher K, Breer H", "protein_xref_pubmed", "17556730", "protein_xref_refseq", "NP_783175" ], [ "P61589-1", "Mechanism of RhoA regulating benign prostatic hyperplasia: RhoA-ROCK-\u03b2-catenin signaling axis and static & dynamic dual roles.", "Molecular medicine (Cambridge, Mass.)", "2023-10-20", "Shan Shidong, Su Min, Li Yan, Wang Zhen, Liu Daoquan, Zhou Yongying, Fu Xun, Yang Shu, Zhang Junchao, Qiu Jizhang, Liu Huan, Zeng Guang, Chen Ping, Wang Xinghuan, DiSanto Michael E, Guo Yuming, Zhang Xinhua", "protein_xref_pubmed", "37864185", "protein_xref_refseq", "NP_476473" ], [ "P26255-1", "Opposite Effects of Voluntary Physical Exercise on beta3-Adrenergic Receptors in the White and Brown Adipose Tissue.", "Hormone and metabolic research = Hormon- und Stoffwechselforschung = Hormones et metabolisme", "2019 Sep", "Balagova L, Graban J, Puhova A, Jezova D", "protein_xref_pubmed", "31295748", "protein_xref_refseq", "NP_037240" ], [ "P14669-1", "Regulation of total LC3 levels by angiotensin II in vascular smooth muscle cells.", "Journal of cellular and molecular medicine", "2022 Mar", "Mondaca-Ruff D, Quiroga C, Norambuena-Soto I, Riquelme JA, San Martin A, Bustamante M, Lavandero S, Chiong M", "protein_xref_pubmed", "35118791", "protein_xref_refseq", "NP_036955" ], [ "O35552-1", "[Sleep deprivation aggravates cognitive impairment in septic rats by activating neuronal glycolytic isoenzyme PFKFB3].", "Zhonghua wei zhong bing ji jiu yi xue", "2023 Mar", "Liu Y, Yao P, Song Y, Wang X, Wang X", "protein_xref_pubmed", "36916342", "protein_xref_refseq", "NP_476476" ], [ "P35284-1", "Rab12 Regulates Retrograde Transport of Mast Cell Secretory Granules by Interacting with the RILP-Dynein Complex.", "Journal of immunology (Baltimore, Md. : 1950)", "2016 Feb 1", "Efergan A, Azouz NP, Klein O, Noguchi K, Rothenberg ME, Fukuda M, Sagi-Eisenberg R", "protein_xref_pubmed", "26740112", "protein_xref_refseq", "NP_037149" ], [ "G3V9M3-1", "WDR47 protects neuronal microtubule minus ends from katanin-mediated severing.", "Cell reports", "2021 Jul 13", "Buijs RR, Hummel JJA, Burute M, Pan X, Cao Y, Stucchi R, Altelaar M, Akhmanova A, Kapitein LC, Hoogenraad CC", "protein_xref_pubmed", "34260930", "protein_xref_refseq", "NP_001094172" ], [ "P63039-1", "Heat Shock Protein HSP60 in Left Ventricular Cardiomyocytes of Hypertensive Rats with and without Insulin-Dependent Diabetes Mellitus.", "Bulletin of experimental biology and medicine", "2020 Nov", "Blagonravov ML, Sklifasovskaya AP, Korshunova AY, Azova MM, Kurlaeva AO", "protein_xref_pubmed", "33219889", "protein_xref_refseq", "NP_071565" ], [ "A6IA08-1", "BAG3 protects chondrocytes against lumbar facet joint osteoarthritis by regulating autophagy and apoptosis.", "Journal of physiology and biochemistry", "2022 May", "Lu X, Zhang J, Xue P, Wang Q, Wang X, Sun Y, Cui Z", "protein_xref_pubmed", "35253089", "protein_xref_refseq", "NP_001011936" ], [ "Q8R2H2-1", "Role of miR-223-3p in pulmonary arterial hypertension via targeting ITGB3 in the ECM pathway.", "Cell proliferation", "2019 Mar", "Liu A, Liu Y, Li B, Yang M, Liu Y, Su J", "protein_xref_pubmed", "30507047", "protein_xref_refseq", "NP_714942" ], [ "Q63634-1", "The identification of neuropeptide Y receptor subtype involved in phenylpropanolamine-induced increase in oxidative stress and appetite suppression.", "Neuromolecular medicine", "2013 Mar", "Hsieh YS, Kuo MH, Chen PN, Kuo DY", "protein_xref_pubmed", "23179670", "protein_xref_refseq", "NP_037001" ], [ "Q6WAY2-1", "Molecular cloning and expression regulation of PRG-3, a new member of the plasticity-related gene family.", "The European journal of neuroscience", "2004 Jan", "Savaskan NE, Brauer AU, Nitsch R", "protein_xref_pubmed", "14750979", "protein_xref_refseq", "NP_958428" ], [ "P05182-1", "Adverse outcome pathway exploration of furan-induced liver fibrosis in rats: Genotoxicity pathway or oxidative stress pathway through CYP2E1 activation?", "Chemosphere", "2023-08-30", "Tang Xinyao, Miao Yeqiu, Cao Li, Liu Yufei, Zhu Xia, Zhang Jing, Wang Dongxia, Li Xiaomeng, Zhang Lishi, Huo Jiao, Chen Jinyao", "protein_xref_pubmed", "37657698", "protein_xref_refseq", "NP_113731" ], [ "P27615-1", "The NH(2)-terminal transmembrane and lumenal domains of LGP85 are needed for the formation of enlarged endosomes/lysosomes.", "Traffic (Copenhagen, Denmark)", "2005 Oct", "Kuronita T, Hatano T, Furuyama A, Hirota Y, Masuyama N, Saftig P, Himeno M, Fujita H, Tanaka Y", "protein_xref_pubmed", "16138903", "protein_xref_refseq", "NP_446453" ], [ "Q63633-1", "NKCC1 and KCC2 Chloride Transporters Have Different Membrane Dynamics on the Surface of Hippocampal Neurons.", "Cells", "2023-09-26", "Pol Erwan, C\u00f4me Etienne, Merlaud Zaha, Gouhier Juliette, Russeau Marion, Scotto-Lomassese Sophie, Moutkine Imane, Marques Xavier, L\u00e9vi Sabine", "protein_xref_pubmed", "37830575", "protein_xref_refseq", "NP_599190" ], [ "Q6IRJ7-1", "Annexin A7 and SNAP23 interactions in alveolar type II cells and in vitro: a role for Ca(2+) and PKC.", "Biochimica et biophysica acta", "2012 Oct", "Gerelsaikhan T, Vasa PK, Chander A", "protein_xref_pubmed", "22713544", "protein_xref_refseq", "NP_569100" ], [ "P80203-1", "The role of Alk-1 and Alk-5 in the mechanosensing of chondrocytes.", "Cellular & molecular biology letters", "2014 Dec", "Sanz-Ramos P, Dotor J, Izal-Azcarate I", "protein_xref_pubmed", "25424912", "protein_xref_refseq", "NP_071886" ], [ "Q6XVN8-1", "Scanning Electron-Assisted Dielectric Microscopy Reveals Autophagosome Formation by LC3 and ATG12 in Cultured Mammalian Cells.", "International journal of molecular sciences", "2021 Feb 12", "Okada T, Ogura T", "protein_xref_pubmed", "33673233", "protein_xref_refseq", "NP_955794" ], [ "P97526-1", "The neurofibromatosis type I gene promotes autophagy via mTORC1 signalling pathway to enhance new bone formation after fracture.", "Journal of cellular and molecular medicine", "2020 Oct", "Tan Q, Wu JY, Liu YX, Liu K, Tang J, Ye WH, Zhu GH, Mei HB, Yang G", "protein_xref_pubmed", "32862562", "protein_xref_refseq", "NP_036741" ], [ "F1M3F2-1", "Inhibition of Smurf2 translation by miR-322/503 protects from ischemia-reperfusion injury by modulating EZH2/Akt/GSK3beta signaling.", "American journal of physiology. Cell physiology", "2019 Aug 1", "Dong W, Xie F, Chen XY, Huang WL, Zhang YZ, Luo WB, Chen J, Xie MT, Peng XP", "protein_xref_pubmed", "30649914", "protein_xref_refseq", "NP_001100531" ], [ "Q08406-1", "The modulatory effects of luteolin on cyclic AMP/Ciliary neurotrophic factor signaling pathway in experimentally induced autoimmune encephalomyelitis.", "IUBMB life", "2019 Sep", "El-Deeb OS, Ghanem HB, El-Esawy RO, Sadek MT", "protein_xref_pubmed", "31185137", "protein_xref_refseq", "NP_001003929" ], [ "P29596-1", "MicroRNA-124 conducts neuroprotective effect via inhibiting AK4/ATF3 after subarachnoid hemorrhage.", "Experimental brain research", "2024-01", "Jiang Wei, Jia Qingge, Ma Hongxin, Han Song, Bi Shijun, Zhu Kunyuan, Chen Ligang, Liang Guobiao", "protein_xref_pubmed", "37932484", "protein_xref_refseq", "NP_037044" ], [ "Q8CF82-1", "Cloning of human and rat ABCA5/Abca5 and detection of a human splice variant.", "Biochemical and biophysical research communications", "2003 Jan 10", "Petry F, Kotthaus A, Hirsch-Ernst KI", "protein_xref_pubmed", "12504089", "protein_xref_refseq", "NP_775429" ], [ "Q7TNY1-1", "LncRNA NKILA Exacerbates Alzheimer's Disease Progression by Regulating the FOXA1-Mediated Transcription of TNFAIP1.", "Neurochemical research", "2023-09", "Zhou Yuan, Wang Yujin, Wang Yalee, Chen Lianji, Wang Nan, Su Yanjin, Diwu Yongchang, Zhang Qi", "protein_xref_pubmed", "37217807", "protein_xref_refseq", "NP_891995" ], [ "Q7TNI4-1", "IL-22RA2 associates with multiple sclerosis and macrophage effector mechanisms in experimental neuroinflammation.", "Journal of immunology (Baltimore, Md. : 1950)", "2010 Dec 1", "Beyeen AD, Adzemovic MZ, Ockinger J, Stridh P, Becanovic K, Laaksonen H, Lassmann H, Harris RA, Hillert J, Alfredsson L, Celius EG, Harbo HF, Kockum I, Jagodic M, Olsson T", "protein_xref_pubmed", "21041731", "protein_xref_refseq", "NP_001003404" ], [ "D3Z9H7-1", "Involvement of calcineurin/NFATc4 pathway in a single-prolonged stress-based rat model of post-traumatic stress disorder.", "Molecular biology reports", "2019 Dec", "Su Q, Liu M, Jiang M, Wang Y, Ma X, Li S, Xie J", "protein_xref_pubmed", "31486013", "protein_xref_refseq", "NP_001100734" ], [ "Q6AYU3-1", "Cell and Context-Dependent Effects of the Heat Shock Protein DNAJB6 on Neuronal Survival.", "Molecular neurobiology", "2016 Oct", "Smith C, D'Mello SR", "protein_xref_pubmed", "26476842", "protein_xref_refseq", "NP_001013227" ], [ "P60517-1", "Interaction of Bcl-2 with the autophagy-related GABAA receptor-associated protein (GABARAP): biophysical characterization and functional implications.", "The Journal of biological chemistry", "2013 Dec 27", "Ma P, Schwarten M, Schneider L, Boeske A, Henke N, Lisak D, Weber S, Mohrluder J, Stoldt M, Strodel B, Methner A, Hoffmann S, Weiergraber OH, Willbold D", "protein_xref_pubmed", "24240096", "protein_xref_refseq", "NP_742033" ], [ "Q8K3E7-1", "A role of histone H3 lysine 4 methyltransferase components in endosomal trafficking.", "The Journal of cell biology", "2009 Aug 10", "Xu Z, Gong Q, Xia B, Groves B, Zimmermann M, Mugler C, Mu D, Matsumoto B, Seaman M, Ma D", "protein_xref_pubmed", "19651892", "protein_xref_refseq", "NP_775140" ], [ "P08721-1", "[Role of SPP1 in acute kidney injury induced by renal ischemia-reperfusion in rats].", "Nan fang yi ke da xue xue bao = Journal of Southern Medical University", "2023-11-20", "Yu G, Wang X, Luo J, Su X, Tao H, Wen Z, Guan H", "protein_xref_pubmed", "38081614", "protein_xref_refseq", "NP_037013" ], [ "Q03114-1", "Cdk5 mediates rotational force-induced brain injury.", "Scientific reports", "2023-02-28", "Umfress Alan, Chakraborti Ayanabha, Priya Sudarsana Devi Suma, Adams Raegan, Epstein Daniel, Massicano Adriana, Sorace Anna, Singh Sarbjit, Iqbal Hossian M, Andrabi Shaida A, Crossman David K, Kumar Nilesh, Shahid Mukhtar M, Luo Huiyang, Simpson Claire, Abell Kathryn, Stokes Matthew, Wiederhold Thorsten, Rosen Charles, Lu Hongbing, Natarajan Amarnath, Bibb James A", "protein_xref_pubmed", "36854738", "protein_xref_refseq", "NP_543161" ], [ "P25095-1", "Astrocytic AT1R deficiency ameliorates A\u03b2-induced cognitive deficits and synaptotoxicity through \u03b2-arrestin2 signaling.", "Progress in neurobiology", "2023-09", "Chen Xinyue, Gao Ruiqi, Song Yizhi, Xu Tao, Jin Liangyun, Zhang Wanning, Chen Ziyan, Wang Hongqi, Wu Wenxing, Zhang Suli, Zhang Guitao, Zhang Ning, Chang Lirong, Liu Huirong, Li Hui, Wu Yan", "protein_xref_pubmed", "37355221", "protein_xref_refseq", "NP_112247" ], [ "P70616-1", "Down-regulation of Zac1 gene expression in rat white adipose tissue by androgens.", "The Journal of steroid biochemistry and molecular biology", "2014 Mar", "Mirowska A, Sledzinski T, Smolenski RT, Swierczynski J", "protein_xref_pubmed", "24316431", "protein_xref_refseq", "NP_036892" ], [ "Q66H70-1", "Red nucleus IL-33 facilitates the early development of mononeuropathic pain in male rats by inducing TNF-alpha through activating ERK, p38 MAPK, and JAK2/STAT3.", "Journal of neuroinflammation", "2021 Jul 5", "Li HN, Yang QQ, Wang WT, Tian X, Feng F, Zhang ST, Xia YT, Wang JX, Zou YW, Wang JY, Zeng XY", "protein_xref_pubmed", "34225736", "protein_xref_refseq", "NP_001014188" ], [ "P23680-1", "Serum amyloid P component induces neuronal apoptosis and beta-amyloid immunoreactivity.", "Brain research", "2003 Oct 24", "Urbanyi Z, Laszlo L, Tomasi TB, Toth E, Mekes E, Sass M, Pazmany T", "protein_xref_pubmed", "14519527", "protein_xref_refseq", "NP_058866" ], [ "A6HN85-1", "C1q/TNF-related protein 4 (CTRP4) is a unique secreted protein with two tandem C1q domains that functions in the hypothalamus to modulate food intake and body weight.", "The Journal of biological chemistry", "2014 Feb 14", "Byerly MS, Petersen PS, Ramamurthy S, Seldin MM, Lei X, Provost E, Wei Z, Ronnett GV, Wong GW", "protein_xref_pubmed", "24366864", "protein_xref_refseq", "NP_001101215" ], [ "Q920L6-1", "Modulation of palmitate-induced endoplasmic reticulum stress and apoptosis in pancreatic beta-cells by stearoyl-CoA desaturase and Elovl6.", "American journal of physiology. Endocrinology and metabolism", "2011 Apr", "Green CD, Olson LK", "protein_xref_pubmed", "21266672", "protein_xref_refseq", "NP_599210" ], [ "Q5BJM8-1", "Overexpression of Slc30a7/ZnT7 increases the mitochondrial matrix levels of labile Zn2+ and modifies histone modification in hyperinsulinemic cardiomyoblasts.", "Journal of trace elements in medicine and biology : organ of the Society for Minerals and Trace Elements (GMS)", "2023-05-12", "Tuncay Erkan, Aktay Irem, Turan Belma", "protein_xref_pubmed", "37196548", "protein_xref_refseq", "NP_001178644" ], [ "Q9ES67-1", "Ethanol increases the activity of rat excitatory amino acid transporter type 4 expressed in Xenopus oocytes: role of protein kinase C and phosphatidylinositol 3-kinase.", "Alcoholism, clinical and experimental research", "2008 Feb", "Park HY, Kim JH, Zuo Z, Do SH", "protein_xref_pubmed", "18226120", "protein_xref_refseq", "NP_076472" ], [ "Q5HZY2-1", "Sar1 translocation onto the ER-membrane for vesicle budding has different pathways for promotion and suppression of ER-to-Golgi transport mediated through H89-sensitive kinase and ER-resident G protein.", "Molecular and cellular biochemistry", "2012 Jul", "Nakagawa H, Ishizaki M, Miyazaki S, Abe T, Nishimura K, Komori M, Matsuo S", "protein_xref_pubmed", "22484643", "protein_xref_refseq", "NP_001009622" ], [ "P08516-1", "Effects of rosuvastatin correlated with the down-regulation of CYP4A1 in spontaneously hypertensive rats.", "Microvascular research", "2015 Mar", "Li DB, Xu HW, Yang GJ, Yang JM, Fang H, Tang JY", "protein_xref_pubmed", "25636742", "protein_xref_refseq", "NP_787031" ], [ "O35179-1", "Endophilin A2 protects H2O2-induced apoptosis by blockade of Bax translocation in rat basilar artery smooth muscle cells.", "Journal of molecular and cellular cardiology", "2016 Mar", "Liu Y, Gao M, Ma MM, Tang YB, Zhou JG, Wang GL, Du YH, Guan YY", "protein_xref_pubmed", "26854628", "protein_xref_refseq", "NP_446387" ], [ "P09527-1", "Research of STEAP3 interaction with Rab7A and RACK1 to modulate the MAPK and JAK/STAT signaling in Osteoarthritis.", "International immunopharmacology", "2023-11", "Sun Chang, Peng Song, Lv Zhongyang, Guo Ting, Zhang Lei", "protein_xref_pubmed", "37820423", "protein_xref_refseq", "NP_076440" ], [ "Q91ZF1-1", "Inhibition of glucose-stimulated insulin secretion by KCNJ15, a newly identified susceptibility gene for type 2 diabetes.", "Diabetes", "2012 Jul", "Okamoto K, Iwasaki N, Doi K, Noiri E, Iwamoto Y, Uchigata Y, Fujita T, Tokunaga K", "protein_xref_pubmed", "22566534", "protein_xref_refseq", "NP_579855" ], [ "P43219-1", "Expression of glucose-dependent insulinotropic polypeptide and its receptor in the rat major salivary glands.", "Acta histochemica", "2014 May", "Privatananupunt J, Watari I, Podyma-Inoue KA, Kubono M, Ono T", "protein_xref_pubmed", "24360021", "protein_xref_refseq", "NP_036846" ], [ "P20294-1", "Ciliary Neurotrophic Factor (CNTF) Protects Myocardial Cells from Oxygen Glucose 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inhibition by RALT/MIG6 via kinase suppression and receptor degradation.", "The Journal of cell biology", "2010 May 3", "Frosi Y, Anastasi S, Ballaro C, Varsano G, Castellani L, Maspero E, Polo S, Alema S, Segatto O", "protein_xref_pubmed", "20421427", "protein_xref_refseq", "NP_001014093" ], [ "Q920H8-1", "Age-dependent expression of duodenal cytochrome b, divalent metal transporter 1, ferroportin 1, and hephaestin in the duodenum of rats.", "Journal of gastroenterology and hepatology", "2015 Mar", "Kong WN, Wu Q, Shen D, Zhao SE, Guo P, Duan XL, Chang YZ", "protein_xref_pubmed", "25318588", "protein_xref_refseq", "NP_579838" ], [ "Q5M831-1", "The schizophrenia susceptibility factor dysbindin and its associated complex sort cargoes from cell bodies to the synapse.", "Molecular biology of the cell", "2011 Dec", "Larimore J, Tornieri K, Ryder PV, Gokhale A, Zlatic SA, Craige B, Lee JD, Talbot K, Pare JF, Smith Y, Faundez V", "protein_xref_pubmed", "21998198", "protein_xref_refseq", "NP_001014178" ], [ "Q1AAU6-1", "ASAP1 promotes tumor cell motility and invasiveness, stimulates metastasis formation in vivo, and correlates with poor survival in colorectal cancer patients.", "Oncogene", "2010 Apr 22", "Muller T, Stein U, Poletti A, Garzia L, Rothley M, Plaumann D, Thiele W, Bauer M, Galasso A, Schlag P, Pankratz M, Zollo M, Sleeman JP", "protein_xref_pubmed", "20154719", "protein_xref_refseq", "NP_001037710" ], [ "Q03062-1", "Folic acid enhances Notch signaling, hippocampal neurogenesis, and cognitive function in a rat model of cerebral ischemia.", "Nutritional neuroscience", "2012 Mar", "Zhang X, Huang G, Liu H, Chang H, Wilson JX", "protein_xref_pubmed", "22334042", "protein_xref_refseq", "NP_077359" ], [ "D3ZYL0-1", "RIPK1-RIPK3 mediates myocardial fibrosis in type 2 diabetes mellitus by impairing autophagic flux of cardiac fibroblasts.", "Cell death & disease", "2022 Feb 14", "Qiao S, Hong L, Zhu Y, Zha J, Wang A, Qiu J, Li W, Wang C, An J, Zhang H", "protein_xref_pubmed", "35165268", "protein_xref_refseq", "NP_001100820" ], [ "Q62840-1", "Ameloblastin and amelogenin share a common secretory pathway and are co-secreted during enamel formation.", "Matrix biology : journal of the International Society for Matrix Biology", "2008 May", "Zalzal SF, Smith CE, Nanci A", "protein_xref_pubmed", "18281204", "protein_xref_refseq", "NP_037032" ], [ "Q07116-1", "Sulphite oxidase gene expression in human brain and in other human and rat tissues.", "Biochemical and biophysical research communications", "2003 Jun 6", "Woo WH, Yang H, Wong KP, Halliwell B", "protein_xref_pubmed", "12763039", "protein_xref_refseq", "NP_112389" ], [ "P26453-1", "Inflammation suppression by dexamethasone via inhibition of CD147-mediated NF-kappaB pathway in collagen-induced arthritis rats.", "Molecular and cellular biochemistry", "2020 Oct", "Wang Q, Xu B, Fan K, Wu J, Wang T", "protein_xref_pubmed", "32594339", "protein_xref_refseq", "NP_001103352" ], [ "Q6IG12-1", 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Gastrointestinal and liver physiology", "2003 Oct", "Schafer C, Steffen H, Krzykowski KJ, Goke B, Groblewski GE", "protein_xref_pubmed", "12801884", "protein_xref_refseq", "NP_690003" ], [ "Q4KM65-1", "Knockdown of pre-mRNA cleavage factor Im 25 kDa promotes neurite outgrowth.", "Biochemical and biophysical research communications", "2012 Sep 7", "Fukumitsu H, Soumiya H, Furukawa S", "protein_xref_pubmed", "22898046", "protein_xref_refseq", "NP_001034093" ] ] }, "readme": "Name\n - Rat Protein Citations (RefSeq)\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2019-09-06T14:06:38.990766\n\nModified on\n - 2022-09-26T09:04:47.917146\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Citations (RefSeq) datasets contains rat [taxid:10116] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_blacklisted_pmids_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/compiled/rat_protein_blacklisted_pmids_uniprotkb.csv\n Name: rat_protein_function_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/rat_protein_function_refseq.csv\n Output Subdomain\n Name: rat_protein_citations_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/rat_protein_citations_refseq.csv\n Name: rat_protein_citations_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/rat_protein_citations_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"4981\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"12299\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1287\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"3495\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"12259\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"12299\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"4981\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/rat_protein_citations_refseq.csv" }