{ "bcoid": "GLY_000259", "title": "Rat UniProtKB Xref UniCarbKB", "description": "The Rat UniProtKB Xref UniCarbKB contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_unicarbkb.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tag": [ "Unicarbkb cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P09006-1...", "protein_xref..." ], [ "Q9ESR9-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P09006-1", "protein_xref_unicarbkb", "P09006", "UniCarbKB" ], [ "Q9ESR9-1", "protein_xref_unicarbkb", "Q9ESR9", "UniCarbKB" ], [ "P14841-1", "protein_xref_unicarbkb", "P14841", "UniCarbKB" ], [ "B0BND0-1", "protein_xref_unicarbkb", "B0BND0", "UniCarbKB" ], [ "P97603-1", "protein_xref_unicarbkb", "P97603", "UniCarbKB" ], [ "F1MAN8-1", "protein_xref_unicarbkb", "F1MAN8", "UniCarbKB" ], [ "Q5XII0-1", "protein_xref_unicarbkb", "Q5XII0", "UniCarbKB" ], [ "P97829-1", "protein_xref_unicarbkb", "P97829", "UniCarbKB" ], [ "Q63198-1", "protein_xref_unicarbkb", "Q63198", "UniCarbKB" ], [ "Q5NDF0-1", "protein_xref_unicarbkb", "Q5NDF0", "UniCarbKB" ], [ "Q64663-1", "protein_xref_unicarbkb", "Q64663", "UniCarbKB" ], [ "Q62867-1", "protein_xref_unicarbkb", "Q62867", "UniCarbKB" ], [ "Q66HD0-1", "protein_xref_unicarbkb", "Q66HD0", "UniCarbKB" ], [ "Q925N6-1", "protein_xref_unicarbkb", "Q925N6", "UniCarbKB" ], [ "P12839-1", "protein_xref_unicarbkb", "P12839", "UniCarbKB" ], [ "P97546-2", "protein_xref_unicarbkb", "P97546", "UniCarbKB" ], [ "Q63633-1", "protein_xref_unicarbkb", "Q63633", "UniCarbKB" ], [ "P47820-1", "protein_xref_unicarbkb", "P47820", "UniCarbKB" ], [ "P18614-1", "protein_xref_unicarbkb", "P18614", "UniCarbKB" ], [ "Q99ML5-1", "protein_xref_unicarbkb", "Q99ML5", "UniCarbKB" ], [ "Q9JK00-1", "protein_xref_unicarbkb", "Q9JK00", "UniCarbKB" ], [ "Q9JHS6-1", "protein_xref_unicarbkb", "Q9JHS6", "UniCarbKB" ], [ "D4A2I9-1", "protein_xref_unicarbkb", "D4A2I9", "UniCarbKB" ], [ "P97846-1", "protein_xref_unicarbkb", "P97846", "UniCarbKB" ], [ "Q6P7A9-1", "protein_xref_unicarbkb", "Q6P7A9", "UniCarbKB" ], [ "P20236-1", "protein_xref_unicarbkb", "P20236", "UniCarbKB" ], [ "Q00960-1", "protein_xref_unicarbkb", "Q00960", "UniCarbKB" ], [ "P48303-1", "protein_xref_unicarbkb", "P48303", "UniCarbKB" ], [ "Q68FQ2-1", "protein_xref_unicarbkb", "Q68FQ2", "UniCarbKB" ], [ "F1LNP8-1", "protein_xref_unicarbkb", "F1LNP8", "UniCarbKB" ], [ "Q5EB76-1", "protein_xref_unicarbkb", "Q5EB76", "UniCarbKB" ], [ "P46101-1", "protein_xref_unicarbkb", "P46101", "UniCarbKB" ], [ "Q62682-1", "protein_xref_unicarbkb", "Q62682", "UniCarbKB" ], [ "Q9Z0U4-1", "protein_xref_unicarbkb", "Q9Z0U4", "UniCarbKB" ], [ "O35112-1", "protein_xref_unicarbkb", "O35112", "UniCarbKB" ], [ "P07314-1", "protein_xref_unicarbkb", "P07314", "UniCarbKB" ], [ "D3ZES7-1", "protein_xref_unicarbkb", "D3ZES7", "UniCarbKB" ], [ "Q91XT9-1", "protein_xref_unicarbkb", "Q91XT9", "UniCarbKB" ], [ "B2GV54-1", "protein_xref_unicarbkb", "B2GV54", "UniCarbKB" ], [ "D4A8L9-1", "protein_xref_unicarbkb", "D4A8L9", "UniCarbKB" ], [ "P47971-1", "protein_xref_unicarbkb", "P47971", "UniCarbKB" ], [ "P15800-1", "protein_xref_unicarbkb", "P15800", "UniCarbKB" ], [ "P12346-1", "protein_xref_unicarbkb", "P12346", "UniCarbKB" ], [ "Q7M730-1", "protein_xref_unicarbkb", "Q7M730", "UniCarbKB" ], [ "O35764-1", "protein_xref_unicarbkb", "O35764", "UniCarbKB" ], [ "D4A435-1", "protein_xref_unicarbkb", "D4A435", "UniCarbKB" ], [ "Q63155-1", "protein_xref_unicarbkb", "Q63155", "UniCarbKB" ], [ "Q9JHW1-1", "protein_xref_unicarbkb", "Q9JHW1", "UniCarbKB" ], [ "Q5PQV5-1", "protein_xref_unicarbkb", "Q5PQV5", "UniCarbKB" ], [ "P28471-1", "protein_xref_unicarbkb", "P28471", "UniCarbKB" ], [ "P29994-1", "protein_xref_unicarbkb", "P29994", "UniCarbKB" ], [ "Q5FVH2-1", "protein_xref_unicarbkb", "Q5FVH2", "UniCarbKB" ], [ "P97710-1", "protein_xref_unicarbkb", "P97710", "UniCarbKB" ], [ "P31422-1", "protein_xref_unicarbkb", "P31422", "UniCarbKB" ], [ "P35053-1", "protein_xref_unicarbkb", "P35053", "UniCarbKB" ], [ "Q62718-1", "protein_xref_unicarbkb", "Q62718", "UniCarbKB" ], [ "Q63345-1", "protein_xref_unicarbkb", "Q63345", "UniCarbKB" ], [ "P15087-1", "protein_xref_unicarbkb", "P15087", "UniCarbKB" ], [ "Q8R4E1-1", "protein_xref_unicarbkb", "Q8R4E1", "UniCarbKB" ], [ "O70352-1", "protein_xref_unicarbkb", "O70352", "UniCarbKB" ], [ "Q45R42-1", "protein_xref_unicarbkb", "Q45R42", "UniCarbKB" ], [ "Q63564-1", "protein_xref_unicarbkb", "Q63564", "UniCarbKB" ], [ "Q64244-1", "protein_xref_unicarbkb", "Q64244", "UniCarbKB" ], [ "P55280-1", "protein_xref_unicarbkb", "P55280", "UniCarbKB" ], [ "Q9R1K2-1", "protein_xref_unicarbkb", "Q9R1K2", "UniCarbKB" ], [ "Q9QZA6-1", "protein_xref_unicarbkb", "Q9QZA6", "UniCarbKB" ], [ "Q62765-1", "protein_xref_unicarbkb", "Q62765", "UniCarbKB" ], [ "Q9EPB1-1", "protein_xref_unicarbkb", "Q9EPB1", "UniCarbKB" ], [ "Q6AYA5-1", "protein_xref_unicarbkb", "Q6AYA5", "UniCarbKB" ], [ "P54290-1", "protein_xref_unicarbkb", "P54290", "UniCarbKB" ], [ "Q32KJ5-1", "protein_xref_unicarbkb", "Q32KJ5", "UniCarbKB" ], [ "Q6P7S1-1", "protein_xref_unicarbkb", "Q6P7S1", "UniCarbKB" ], [ "O35795-1", "protein_xref_unicarbkb", "O35795", "UniCarbKB" ], [ "Q8VII6-1", "protein_xref_unicarbkb", "Q8VII6", "UniCarbKB" ], [ "Q8K3V3-1", "protein_xref_unicarbkb", "Q8K3V3", "UniCarbKB" ], [ "P19493-1", "protein_xref_unicarbkb", "P19493", "UniCarbKB" ], [ "P48284-1", "protein_xref_unicarbkb", "P48284", "UniCarbKB" ], [ "Q794F9-1", "protein_xref_unicarbkb", "Q794F9", "UniCarbKB" ], [ "Q9JJW1-1", "protein_xref_unicarbkb", "Q9JJW1", "UniCarbKB" ], [ "O54861-1", "protein_xref_unicarbkb", "O54861", "UniCarbKB" ], [ "P97685-1", "protein_xref_unicarbkb", "P97685", "UniCarbKB" ], [ "P97686-1", "protein_xref_unicarbkb", "P97686", "UniCarbKB" ], [ "Q5FVI4-1", "protein_xref_unicarbkb", "Q5FVI4", "UniCarbKB" ], [ "P24268-1", "protein_xref_unicarbkb", "P24268", "UniCarbKB" ] ] }, "readme": "Name\n - Rat UniProtKB Xref UniCarbKB\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2019-09-06T14:06:38.986196\n\nModified on\n - 2022-09-26T09:04:47.941156\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniProtKB Xref UniCarbKB contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to UniCarbKB database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. \n\nDescription Domain\n Keywords\n - glycoprotein\n - glycan\n - UniCarbKB\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to UniCarbKB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/rat_proteoform_glycosylation_sites_unicarbkb.csv\n Name: rat_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/rat_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n Output Subdomain\n Name: rat_protein_xref_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/rat_protein_xref_unicarbkb.csv\n Name: rat_protein_xref_unicarbkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/rat_protein_xref_unicarbkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"155\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"155\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/rat_protein_xref_unicarbkb.csv" }