{ "bcoid": "GLY_000250", "title": "Rat UniProtKB Xref KEGG PATHWAY", "description": "The Rat UniProtKB Xref KEGG PATHWAY contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_kegg.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tag": [ "Kegg Pathway cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q0HA29-1...", "protein_xref..." ], [ "A0A0G2JVG5-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q0HA29-1", "protein_xref_kegg", "rno:289095", "" ], [ "A0A0G2JVG5-1", "protein_xref_kegg", "rno:102552378", "" ], [ "A0A8I5Y5Z6-1", "protein_xref_kegg", "rno:309995", "" ], [ "P30937-1", "protein_xref_kegg", "rno:25555", "" ], [ "O35152-1", "protein_xref_kegg", "rno:54400", "" ], [ "P30936-1", "protein_xref_kegg", "rno:171044", "" ], [ "O35158-1", "protein_xref_kegg", "rno:50938", "" ], [ "P02761-1", "protein_xref_kegg", "rno:298109", "" ], [ "P02764-1", "protein_xref_kegg", "rno:24614", "" ], [ "P02767-1", "protein_xref_kegg", "rno:24856", "" ], [ "D4A4W0-1", "protein_xref_kegg", "rno:293781", "" ], [ "D4A4W2-1", "protein_xref_kegg", "rno:497921", "" ], [ "D4A4W4-1", "protein_xref_kegg", "rno:366836", "" ], [ "D4A4W5-1", "protein_xref_kegg", "rno:303056", "" ], [ "A0A8I6ABX7-1", "protein_xref_kegg", "rno:102552128", "" ], [ "P01237-1", "protein_xref_kegg", "rno:24683", "" ], [ "P01230-1", "protein_xref_kegg", "rno:25329", "" ], [ "Q9EP80-1", "protein_xref_kegg", "rno:84591", "" ], [ "P09006-1", "protein_xref_kegg", "rno:24795", "" ], [ "Q9JHY1-1", "protein_xref_kegg", "rno:116479", "" ], [ "Q9JHY2-1", "protein_xref_kegg", "rno:65042", "" ], [ "Q9JHY7-1", "protein_xref_kegg", "rno:64041", "" ], [ "Q9WU49-1", "protein_xref_kegg", "rno:260416", "" ], [ "P04757-1", "protein_xref_kegg", "rno:25101", "" ], [ "A0A8I5Y6V4-1", "protein_xref_kegg", "rno:498394", "" ], [ "Q9R1N3-1", "protein_xref_kegg", "rno:117955", "" ], [ "D3ZFP5-1", "protein_xref_kegg", "rno:691352", "" ], [ "D3ZFP4-1", "protein_xref_kegg", "rno:316273", "" ], [ "D3ZFP7-1", "protein_xref_kegg", "rno:293166", "" ], [ "D3ZFP6-1", "protein_xref_kegg", "rno:308768", "" ], [ "D3ZFP1-1", "protein_xref_kegg", "rno:305812", "" ], [ "D4A131-1", "protein_xref_kegg", "rno:363023", "" ], [ "P09875-1", "protein_xref_kegg", "rno:305264", "" ], [ "D4A138-1", "protein_xref_kegg", "rno:288909", "" ], [ "A0A8I6ALX9-1", "protein_xref_kegg", "rno:502711", "" ], [ "A6KSB3-1", "protein_xref_kegg", "rno:304603", "" ], [ "D3ZCS5-1", "protein_xref_kegg", "rno:287634", "" ], [ "D3ZCS4-1", "protein_xref_kegg", "rno:310621", "" ], [ "D3ZCS6-1", "protein_xref_kegg", "rno:287820", "" ], [ "D3ZCS1-1", "protein_xref_kegg", "rno:498246", "" ], [ "D3ZCS3-1", "protein_xref_kegg", "rno:363133", "" ], [ "D3ZCS9-1", "protein_xref_kegg", "rno:293613", "" ], [ "A0A0G2KAH3-1", "protein_xref_kegg", "rno:315497", "" ], [ "D3ZUF1-1", "protein_xref_kegg", "rno:362133", "" ], [ "Q9JIL3-1", "protein_xref_kegg", "rno:84472", "" ], [ "A0A8I6A636-1", "protein_xref_kegg", "rno:305970", "" ], [ "Q6P5P5-1", "protein_xref_kegg", "rno:58827", "" ], [ "A0A0G2JVP1-1", "protein_xref_kegg", "rno:360991", "" ], [ "Q6P5P3-1", "protein_xref_kegg", "rno:309196", "" ], [ "D3ZXJ0-1", "protein_xref_kegg", "rno:288626", "" ], [ "D3ZB41-1", "protein_xref_kegg", "rno:103690110", "" ], [ "A0A8I5ZXW0-1", "protein_xref_kegg", "rno:289280", "" ], [ "D3ZXJ5-1", "protein_xref_kegg", "rno:308789", "" ], [ "A0A0G2JVZ2-1", "protein_xref_kegg", "rno:680117", "" ], [ "A0A0G2JVZ7-1", "protein_xref_kegg", "rno:298543", "" ], [ "P59926-1", "protein_xref_kegg", "rno:306285", "" ], [ "Q9QYH7-1", "protein_xref_kegg", "rno:59301", "" ], [ "Q67ER9-1", "protein_xref_kegg", "rno:680188", "" ], [ "D3ZT68-1", "protein_xref_kegg", "rno:361060", "" ], [ "Q9EPW1-1", "protein_xref_kegg", "rno:29657", "" ], [ "D3ZT64-1", "protein_xref_kegg", "rno:689688", "" ], [ "D3ZT66-1", "protein_xref_kegg", "rno:287969", "" ], [ "D4AE80-1", "protein_xref_kegg", "rno:361109", "" ], [ "D4AE85-1", "protein_xref_kegg", "rno:503052", "" ], [ "A0A0G2K8J8-1", "protein_xref_kegg", "rno:308218", "" ], [ "P97613-1", "protein_xref_kegg", "rno:64193", "" ], [ "P43219-1", "protein_xref_kegg", "rno:25024", "" ], [ "Q9ESR9-1", "protein_xref_kegg", "rno:79248", "" ], [ "D3ZPI2-1", "protein_xref_kegg", "rno:289530", "" ], [ "Q1M168-1", "protein_xref_kegg", "rno:362826", "" ], [ "Q60I18-1", "protein_xref_kegg", "rno:292671", "" ], [ "P37089-1", "protein_xref_kegg", "rno:25122", "" ], [ "Q00972-1", "protein_xref_kegg", "rno:29603", "" ], [ "M0R659-1", "protein_xref_kegg", "rno:295743", "" ], [ "D3ZH36-1", "protein_xref_kegg", "rno:100910536", "" ], [ "Q9ESN0-1", "protein_xref_kegg", "rno:63912", "" ], [ "Q5BK30-1", "protein_xref_kegg", "rno:363267", "" ], [ "Q5BK32-1", "protein_xref_kegg", "rno:291000", "" ], [ "Q5BK36-1", "protein_xref_kegg", "rno:500052", "" ], [ "Q5BK38-1", "protein_xref_kegg", "rno:498365", "" ], [ "Q5BK39-1", "protein_xref_kegg", "rno:308990", "" ], [ "P31016-1", "protein_xref_kegg", "rno:29495", "" ], [ "A0A8I5ZJD4-1", "protein_xref_kegg", "rno:361095", "" ], [ "A0A8I6GDZ5-1", "protein_xref_kegg", "rno:363687", "" ] ] }, "readme": "Name\n - Rat UniProtKB Xref KEGG PATHWAY\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2019-09-06T14:06:38.976805\n\nModified on\n - 2022-09-26T09:04:48.019370\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniProtKB Xref KEGG PATHWAY contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to KEGG PATHWAY database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction, reaction and relation networks. \n\nDescription Domain\n Keywords\n - pathways\n - reactions\n - KEGG Pathway\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to KEGG PATHWAY database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_kegg.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/rat_protein_xref_kegg.csv\n Name: rat_protein_xref_kegg.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/rat_protein_xref_kegg.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"14604\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"14830\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/rat_protein_xref_kegg.csv" }