{ "bcoid": "GLY_000235", "title": "Mouse Protein Citations (RefSeq)", "description": "The Mouse Protein Citations (RefSeq) datasets contains mouse [taxid:10090] UniProtKB accessions mapped ...", "filename": "mouse_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tag": [ "Protein Citations" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q9CQN6-1...", "Discovery of..." ], [ "P29477-1...", "Inducible ni..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "Q9CQN6-1", "Discovery of genes essential for heme biosynthesis through large-scale gene expression analysis.", "Cell metabolism", "2009 Aug", "Nilsson R, Schultz IJ, Pierce EL, Soltis KA, Naranuntarat A, Ward DM, Baughman JM, Paradkar PN, Kingsley PD, Culotta VC, Kaplan J, Palis J, Paw BH, Mootha VK", "protein_xref_pubmed", "19656490", "protein_xref_refseq", "NP_079663" ], [ "P29477-1", "Inducible nitric oxide synthase accelerates nonalcoholic fatty liver disease progression by regulating macrophage autophagy.", "Immunity, inflammation and disease", "2023-12", "Jin Guiyuan, Yao Xiaoying, Liu Dong, Zhang Juan, Zhang Xiaobei, Yang Yonghong, Bi Yanzhen, Zhang Hui, Dong Guanjun, Tang Huixin, Cheng Shumin, Hong Feng, Si Meng", "protein_xref_pubmed", "38156397", "protein_xref_refseq", "NP_001300850" ], [ "Q9EPK5-1", "Genetic interactions between polycystin-1 and Wwtr1 in osteoblasts define a novel mechanosensing mechanism regulating bone formation in mice.", "Bone research", "2023-10-26", "Xiao Zhousheng, Cao Li, Smith Micholas Dean, Li Hanxuan, Li Wei, Smith Jeremy C, Quarles Leigh Darryl", "protein_xref_pubmed", "37884491", "protein_xref_refseq", "NP_001161753" ], [ "P03953-1", "Adipsin inhibits Irak2 mitochondrial translocation and improves fatty acid \u03b2-oxidation to alleviate diabetic cardiomyopathy.", "Military Medical Research", "2023-12-11", "Jiang Meng-Yuan, Man Wan-Rong, Zhang Xue-Bin, Zhang Xiao-Hua, Duan Yu, Lin Jie, Zhang Yan, Cao Yang, Wu De-Xi, Shu Xiao-Fei, Xin Lei, Wang Hao, Zhang Xiao, Li Cong-Ye, Gu Xiao-Ming, Zhang Xuan, Sun Dong-Dong", "protein_xref_pubmed", "38072993", "protein_xref_refseq", "NP_001278844" ], [ "Q9CX47-1", "XRCC2 mutation causes meiotic arrest, azoospermia and infertility.", "Journal of medical genetics", "2018 Sep", "Yang Y, Guo J, Dai L, Zhu Y, Hu H, Tan L, Chen W, Liang D, He J, Tu M, Wang K, Wu L", "protein_xref_pubmed", "30042186", "protein_xref_refseq", "NP_065595" ], [ "P57724-1", "Mice deficient in poly(C)-binding protein 4 are susceptible to spontaneous tumors through increased expression of ZFP871 that targets p53 for degradation.", "Genes & development", "2016 Mar 1", "Yan W, Scoumanne A, Jung YS, Xu E, Zhang J, Zhang Y, Ren C, Sun P, Chen X", "protein_xref_pubmed", "26915821", "protein_xref_refseq", "NP_067542" ], [ "Q921U8-1", "Smoothelin-B deficiency results in reduced arterial contractility, hypertension, and cardiac hypertrophy in mice.", "Circulation", "2008 Aug 19", "Rensen SS, Niessen PM, van Deursen JM, Janssen BJ, Heijman E, Hermeling E, Meens M, Lie N, Gijbels MJ, Strijkers GJ, Doevendans PA, Hofker MH, De Mey JG, van Eys GJ", "protein_xref_pubmed", "18678771", "protein_xref_refseq", "NP_001152756" ], [ "Q6P542-1", "The role of the innate immune response regulatory gene ABCF1 in mammalian embryogenesis and development.", "PloS one", "2017", "Wilcox SM, Arora H, Munro L, Xin J, Fenninger F, Johnson LA, Pfeifer CG, Choi KB, Hou J, Hoodless PA, Jefferies WA", "protein_xref_pubmed", "28542262", "protein_xref_refseq", "NP_038882" ], [ "Q6NZM9-1", "WTAP-Mediated m6A RNA Methylation Regulates the Differentiation of Bone Marrow Mesenchymal Stem Cells via the miR-29b-3p/HDAC4 Axis.", "Stem cells translational medicine", "2023-04-03", "Liu Jincheng, You Yunhao, Sun Zhenqian, Zhang Lu, Li Xiang, Dai Zihan, Ma Jinlong, Chen Yunzhen, Jiao Guangjun", "protein_xref_pubmed", "37010483", "protein_xref_refseq", "NP_997108" ], [ "Q8CDG5-1", "Loss of CREBRF Reduces Anxiety-like Behaviors and Circulating Glucocorticoids in Male and Female Mice.", "Endocrinology", "2020 Nov 1", "Frahm KA, Williams AA, Wood AN, Ewing MC, Mattila PE, Chuan BW, Guo L, Shah FA, O'Donnell CP, Lu R, DeFranco DB", "protein_xref_pubmed", "32901804", "protein_xref_refseq", "NP_084146" ], [ "E9Q5I3-1", "The mouse Muc5b mucin gene: cDNA and genomic structures, chromosomal localization and expression.", "The Biochemical journal", "2002 May 1", "Escande F, Porchet N, Aubert JP, Buisine MP", "protein_xref_pubmed", "11964160", "protein_xref_refseq", "NP_083077" ], [ "Q99N32-1", "BetaKlotho is required for metabolic activity of fibroblast growth factor 21.", "Proceedings of the National Academy of Sciences of the United States of America", "2007 May 1", "Ogawa Y, Kurosu H, Yamamoto M, Nandi A, Rosenblatt KP, Goetz R, Eliseenkova AV, Mohammadi M, Kuro-o M", "protein_xref_pubmed", "17452648", "protein_xref_refseq", "NP_112457" ], [ "Q9EPK5-1", "TAZ interacts with TTF-1 and regulates expression of surfactant protein-C.", "The Journal of biological chemistry", "2004 Apr 23", "Park KS, Whitsett JA, Di Palma T, Hong JH, Yaffe MB, Zannini M", "protein_xref_pubmed", "14970209", "protein_xref_refseq", "NP_001161753" ], [ "D3YYM4-1", "Identification of the C-terminal region in Amelogenesis Imperfecta causative protein WDR72 required for Golgi localization.", "Scientific reports", "2022 Mar 17", "Husein D, Alamoudi A, Ohyama Y, Mochida H, Ritter B, Mochida Y", "protein_xref_pubmed", "35301423", "protein_xref_refseq", "NP_001028672" ], [ "Q9ERD8-1", "gamma-Parvin is dispensable for hematopoiesis, leukocyte trafficking, and T-cell-dependent antibody response.", "Molecular and cellular biology", "2006 Mar", "Chu H, Thievessen I, Sixt M, Lammermann T, Waisman A, Braun A, Noegel AA, Fassler R", "protein_xref_pubmed", "16479001", "protein_xref_refseq", "NP_001155972" ], [ "P30204-1", "Role of macrophage scavenger receptor MSR1 in the progression of non-alcoholic steatohepatitis.", "Frontiers in immunology", "2022", "Sheng Wei, Ji Guang, Zhang Li", "protein_xref_pubmed", "36591228", "protein_xref_refseq", "NP_001106797" ], [ "Q9DAP7-1", "Loss of the histone chaperone ASF1B reduces female reproductive capacity in mice.", "Reproduction (Cambridge, England)", "2016 May", "Messiaen S, Guiard J, Aigueperse C, Fliniaux I, Tourpin S, Barroca V, Allemand I, Fouchet P, Livera G, Vernet M", "protein_xref_pubmed", "26850882", "protein_xref_refseq", "NP_077146" ], [ "Q8VEL2-1", "Muscle-specific inositide phosphatase (MIP/MTMR14) is reduced with age and its loss accelerates skeletal muscle aging process by altering calcium homeostasis.", "Aging", "2010 Aug", "Romero-Suarez S, Shen J, Brotto L, Hall T, Mo C, Valdivia HH, Andresen J, Wacker M, Nosek TM, Qu CK, Brotto M", "protein_xref_pubmed", "20817957", "protein_xref_refseq", "NP_081125" ], [ "Q9CQR4-1", "Interacting proteins dictate function of the minimal START domain phosphatidylcholine transfer protein/StarD2.", "The Journal of biological chemistry", "2007 Oct 19", "Kanno K, Wu MK, Agate DS, Fanelli BJ, Wagle N, Scapa EF, Ukomadu C, Cohen DE", "protein_xref_pubmed", "17704541", "protein_xref_refseq", "NP_080066" ], [ "P24638-1", "Mutation in the gene encoding lysosomal acid phosphatase (Acp2) causes cerebellum and skin malformation in mouse.", "Neurogenetics", "2004 Dec", "Mannan AU, Roussa E, Kraus C, Rickmann M, Maenner J, Nayernia K, Krieglstein K, Reis A, Engel W", "protein_xref_pubmed", "15503243", "protein_xref_refseq", "NP_031413" ], [ "P56481-1", "Intestinal Gastrin/CCKBR (Cholecystokinin B Receptor) Ameliorates Salt-Sensitive Hypertension by Inhibiting Intestinal Na(+)/H(+) Exchanger 3 Activity Through a PKC (Protein Kinase C)-Mediated NHERF1 and NHERF2 Pathway.", "Hypertension (Dallas, Tex. : 1979)", "2022 Aug", "Jiang X, Liu Y, Zhang XY, Liu X, Liu X, Wu X, Jose PA, Duan S, Xu FJ, Yang Z", "protein_xref_pubmed", "35674015", "protein_xref_refseq", "NP_031653" ], [ "P97343-1", "A growth factor-dependent nuclear kinase phosphorylates p27(Kip1) and regulates cell cycle progression.", "The EMBO journal", "2002 Jul 1", "Boehm M, Yoshimoto T, Crook MF, Nallamshetty S, True A, Nabel GJ, Nabel EG", "protein_xref_pubmed", "12093740", "protein_xref_refseq", "NP_034763" ], [ "Q9D198-1", "Disruption of murine mp29/Syf2/Ntc31 gene results in embryonic lethality with aberrant checkpoint response.", "PloS one", "2012", "Chen CH, Chu PC, Lee L, Lien HW, Lin TL, Fan CC, Chi P, Huang CJ, Chang MS", "protein_xref_pubmed", "22448250", "protein_xref_refseq", "NP_081056" ], [ "P70236-1", "MicroRNA-370 carried by M2 macrophage-derived exosomes alleviates asthma progression through inhibiting the FGF1/MAPK/STAT1 axis.", "International journal of biological sciences", "2021", "Li C, Deng C, Zhou T, Hu J, Dai B, Yi F, Tian N, Jiang L, Dong X, Zhu Q, Zhang S, Cui H, Cao L, Shang Y", "protein_xref_pubmed", "33994863", "protein_xref_refseq", "NP_036073" ], [ "Q9JKK0-1", "Differential expression of members of the RCAN family of calcineurin regulators suggests selective functions for these proteins in the brain.", "The European journal of neuroscience", "2007 Sep", "Porta S, Marti E, de la Luna S, Arbones ML", "protein_xref_pubmed", "17767500", "protein_xref_refseq", "NP_075356" ], [ "Q64010-1", "A novel viral oncogene with structural similarity to phospholipase C.", "Nature", "1988 Mar 17", "Mayer BJ, Hamaguchi M, Hanafusa H", "protein_xref_pubmed", "2450282", "protein_xref_refseq", "NP_598417" ], [ "Q99LJ8-1", "Identification of a receptor necessary for Nogo-B stimulated chemotaxis and morphogenesis of endothelial cells.", "Proceedings of the National Academy of Sciences of the United States of America", "2006 Jul 18", "Miao RQ, Gao Y, Harrison KD, Prendergast J, Acevedo LM, Yu J, Hu F, Strittmatter SM, Sessa WC", "protein_xref_pubmed", "16835300", "protein_xref_refseq", "NP_084526" ], [ "Q9CQ70-1", "Histone Variant H2A.L.2 Guides Transition Protein-Dependent Protamine Assembly in Male Germ Cells.", "Molecular cell", "2017 Apr 6", "Barral S, Morozumi Y, Tanaka H, Montellier E, Govin J, de Dieuleveult M, Charbonnier G, Coute Y, Puthier D, Buchou T, Boussouar F, Urahama T, Fenaille F, Curtet S, Hery P, Fernandez-Nunez N, Shiota H, Gerard M, Rousseaux S, Kurumizaka H, Khochbin S", "protein_xref_pubmed", "28366643", "protein_xref_refseq", "NP_080903" ], [ "Q9Z222-1", "N-linked polylactosamine 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termination.", "Cell", "2003 Oct 31", "Orlova M, Yueh A, Leung J, Goff SP", "protein_xref_pubmed", "14636559", "protein_xref_refseq", "NP_659115" ], [ "O35182-1", "Inhibitory SMAD6 interferes with BMP-dependent generation of muscle progenitor cells and perturbs proximodistal pattern of murine limb muscles.", "Development (Cambridge, England)", "2023-06-01", "Asfour Hasan, Hirsinger Estelle, Rouco Raquel, Zarrouki Faouzi, Hayashi Shinichiro, Swist Sandra, Braun Thomas, Patel Ketan, Relaix Fr\u00e9d\u00e9ric, Andrey Guillaume, Stricker Sigmar, Duprez Delphine, Stantzou Amalia, Amthor Helge", "protein_xref_pubmed", "37272529", "protein_xref_refseq", "NP_032568" ], [ "P29477-1", "Versican accumulation drives Nos2 induction and aortic disease in Marfan syndrome via Akt activation.", "EMBO molecular medicine", "2024-01", "Ruiz-Rodr\u00edguez Mar\u00eda Jes\u00fas, Oller Jorge, Mart\u00ednez-Mart\u00ednez Sara, Alarc\u00f3n-Ruiz Iv\u00e1n, Toral Marta, Sun Yilin, Colmenar \u00c1ngel, M\u00e9ndez-Olivares Mar\u00eda Jos\u00e9, L\u00f3pez-Maderuelo Dolores, Kern Christine B, Nistal J Francisco, Evangelista Arturo, Teixido-Tura Gisela, Campanero Miguel R, Redondo Juan Miguel", "protein_xref_pubmed", "38177536", "protein_xref_refseq", "NP_001300850" ], [ "Q60837-1", "IL12Rbeta1DeltaTM is a secreted product of il12rb1 that promotes control of extrapulmonary tuberculosis.", "Infection and immunity", "2015 Feb", "Ray AA, Fountain JJ, Miller HE, Cooper AM, Robinson RT", "protein_xref_pubmed", "25404030", "protein_xref_refseq", "NP_032379" ], [ "Q9JIP4-1", "Expression of neural connexins and pannexin1 in the hippocampus and inferior olive: a quantitative approach.", "Brain research. Molecular brain research", "2005 Jan 5", "Weickert S, Ray A, Zoidl G, Dermietzel R", "protein_xref_pubmed", "15661370", "protein_xref_refseq", "NP_062355" ], [ "Q8K1S4-1", "GPC3-Unc5 receptor complex structure and role in cell migration.", "Cell", "2022-10-13", "Akkermans Onno, Delloye-Bourgeois C\u00e9line, Peregrina Claudia, Carrasquero-Ordaz Maria, Kokolaki Maria, Berbeira-Santana Miguel, Chavent Matthieu, Reynaud Florie, Raj Ritu, Agirre Jon, Aksu Metin, White Eleanor S, Lowe Edward, Ben Amar Dounia, Zaballa Sofia, Huo Jiandong, Pakos Irene, McCubbin Patrick T N, Comoletti Davide, Owens Raymond J, Robinson Carol V, Castellani Val\u00e9rie, Del Toro Daniel, Seiradake Elena", "protein_xref_pubmed", "36240740", "protein_xref_refseq", "NP_001298057" ], [ "P70453-1", "Phosphodiesterase 7A-deficient mice have functional T cells.", "Journal of immunology (Baltimore, Md. : 1950)", "2003 Dec 15", "Yang G, McIntyre KW, Townsend RM, Shen HH, Pitts WJ, Dodd JH, Nadler SG, McKinnon M, Watson AJ", "protein_xref_pubmed", "14662840", "protein_xref_refseq", "NP_001116231" ], [ "P07758-1", "Placental HTRA1 cleaves alpha1-antitrypsin to generate a NET-inhibitory peptide.", "Blood", "2021 Sep 16", "Campbell RA, Campbell HD, Bircher JS, de Araujo CV, Denorme F, Crandell JL, Rustad JL, Monts J, Cody MJ, Kosaka Y, Yost CC", "protein_xref_pubmed", "34192300", "protein_xref_refseq", "NP_033269" ], [ "G5E870-1", "Mild iron overload induces TRIP12-mediated degradation of YY1 to trigger hepatic inflammation.", "Free radical biology & medicine", "2020 Dec", "Tang Y, Wang D, Niu X, Wu H, Yang J, Zhang Y, Song S, Lv D, Chai Y, Lu H, Shen H, Ling C, Li M", "protein_xref_pubmed", "33080340", "protein_xref_refseq", "NP_598736" ], [ "Q64GA5-1", "Induction of group IVC phospholipase A2 in allergic asthma: transcriptional regulation by TNFalpha in bronchoepithelial cells.", "The Biochemical journal", "2012 Feb 15", "Bickford JS, Newsom KJ, Herlihy JD, Mueller C, Keeler B, Qiu X, Walters JN, Su N, Wallet SM, Flotte TR, Nick HS", "protein_xref_pubmed", "22082005", "protein_xref_refseq", "NP_001004762" ], [ "Q5ND29-1", "Cystinosin, the small GTPase Rab11, and the Rab7 effector RILP regulate intracellular trafficking of the chaperone-mediated autophagy receptor LAMP2A.", "The Journal of biological chemistry", "2017 Jun 23", "Zhang J, Johnson JL, He J, Napolitano G, Ramadass M, Rocca C, Kiosses WB, Bucci C, Xin Q, Gavathiotis E, Cuervo AM, Cherqui S, Catz SD", "protein_xref_pubmed", "28465352", "protein_xref_refseq", "NP_001025109" ], [ "Q80ZD9-1", "Alivin 1, a novel neuronal activity-dependent gene, inhibits apoptosis and promotes survival of cerebellar granule neurons.", "The Journal of neuroscience : the official journal of the Society for Neuroscience", "2003 Jul 2", "Ono T, Sekino-Suzuki N, Kikkawa Y, Yonekawa H, Kawashima S", "protein_xref_pubmed", "12843293", "protein_xref_refseq", "NP_001158035" ], [ "P47873-1", "Interleukin-11 Suppresses Ocular Surface Inflammation and Accelerates Wound Healing.", "Investigative ophthalmology & visual science", "2023-11-01", "Singh Aastha, Cho WonKyung J, Pulimamidi Vinay K, Mittal Sharad K, Chauhan Sunil K", "protein_xref_pubmed", "37910094", "protein_xref_refseq", "NP_032376" ], [ "Q8VDJ3-1", "HDLBP binds ER-targeted mRNAs by multivalent interactions to promote protein synthesis of transmembrane and secreted proteins.", "Nature communications", "2022 May 18", "Zinnall U, Milek M, Minia I, Vieira-Vieira CH, Muller S, Mastrobuoni G, Hazapis OG, Del Giudice S, Schwefel D, Bley N, Voigt F, Chao JA, Kempa S, Huttelmaier S, Selbach M, Landthaler M", "protein_xref_pubmed", "35585045", "protein_xref_refseq", "NP_001288293" ], [ "Q8BN59-1", "Regulation of muscle differentiation and survival by Acheron.", "Mechanisms of development", "2009 Aug-Sep", "Wang Z, Glenn H, Brown C, Valavanis C, Liu JX, Seth A, Thomas JE, Karlstrom RO, Schwartz LM", "protein_xref_pubmed", "19481601", "protein_xref_refseq", "NP_080511" ], [ "Q60980-1", "KLF3 Transcription Activates WNT1 and Promotes the Growth and Metastasis of Gastric Cancer via Activation of the WNT/\u03b2-Catenin Signaling Pathway.", "Laboratory investigation; a journal of technical methods and pathology", "2023-02-01", "Li Ying, Wang Yu, Zou Qinguang, Li Shouqing, Zhang Fan", "protein_xref_pubmed", "36827869", "protein_xref_refseq", "NP_032479" ], [ "Q9D9R7-1", "Male-biased expression of X-chromosomal DM domain-less Dmrt8 genes in the mouse.", "Genomics", "2006 Aug", "Veith AM, Klattig J, Dettai A, Schmidt C, Englert C, Volff JN", "protein_xref_pubmed", "16488114", "protein_xref_refseq", "NP_001033705" ], [ "Q8BHJ5-1", "TBL1XR1 Mutations Drive Extranodal Lymphoma by Inducing a Pro-tumorigenic Memory Fate.", "Cell", "2020 Jul 23", "Venturutti L, Teater M, Zhai A, Chadburn A, Babiker L, Kim D, Beguelin W, Lee TC, Kim Y, Chin CR, Yewdell WT, Raught B, Phillip JM, Jiang Y, Staudt LM, Green MR, Chaudhuri J, Elemento O, Farinha P, Weng AP, Nissen MD, Steidl C, Morin RD, Scott DW, Prive GG, Melnick AM", "protein_xref_pubmed", "32619424", "protein_xref_refseq", "NP_109657" ], [ "P59648-1", "FXYD7 is a brain-specific regulator of Na,K-ATPase alpha 1-beta isozymes.", "The EMBO journal", "2002 Jul 1", "Beguin P, Crambert G, Monnet-Tschudi F, Uldry M, Horisberger JD, Garty H, Geering K", "protein_xref_pubmed", "12093728", "protein_xref_refseq", "NP_071290" ], [ "Q8R326-1", "Synergistic upregulation of NONO and PSPC1 regulates Sertoli cell response to MEHP via modulation of ALDH1A1 signaling.", "FEBS letters", "2017 Mar", "Dong BW, Jin XH, Yan CY, Yang T, Cai GQ, Lu J", "protein_xref_pubmed", "28117896", "protein_xref_refseq", "NP_079958" ], [ "Q8R2Y2-1", "CD146 deficiency promotes inflammatory type 2 responses in pulmonary cryptococcosis.", "Medical microbiology and immunology", "2023-10", "Wang Zhengxia, Liu Wei, Hu Huidi, Jiang Jingxian, Yang Chen, Zhang Xijie, Yuan Qi, Yang Xiaofan, Huang Mao, Bao Yanming, Ji Ningfei, Zhang Mingshun", "protein_xref_pubmed", "37650914", "protein_xref_refseq", "NP_075548" ], [ "Q9QZD4-1", "The structure-specific endonuclease complex SLX4-XPF regulates Tus-Ter-induced homologous recombination.", "Nature structural & molecular biology", "2022 Aug", "Elango R, Panday A, Lach FP, Willis NA, Nicholson K, Duffey EE, Smogorzewska A, Scully R", "protein_xref_pubmed", "35941380", "protein_xref_refseq", "NP_056584" ], [ "Q8CIV7-1", "Ovol2, a mammalian homolog of Drosophila ovo: gene structure, chromosomal mapping, and aberrant expression in blind-sterile mice.", "Genomics", "2002 Sep", "Li B, Dai Q, Li L, Nair M, Mackay DR, Dai X", "protein_xref_pubmed", "12213202", "protein_xref_refseq", "NP_081200" ], [ "Q6PB97-1", "FBXL19 recruits CDK-Mediator to CpG islands of developmental genes priming them for activation during lineage commitment.", "eLife", "2018 May 29", "Dimitrova E, Kondo T, Feldmann A, Nakayama M, Koseki Y, Konietzny R, Kessler BM, Koseki H, Klose RJ", "protein_xref_pubmed", 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depletion.", "International journal of clinical and experimental pathology", "2015", "Bockenstedt MM, Boggiatto PM, Jones DE", "protein_xref_pubmed", "26261496", "protein_xref_refseq", "NP_031667" ], [ "Q9JM90-1", "Taking One Step Back in Familial Hypercholesterolemia: STAP1 Does Not Alter Plasma LDL (Low-Density Lipoprotein) Cholesterol in Mice and Humans.", "Arteriosclerosis, thrombosis, and vascular biology", "2020 Apr", "Loaiza N, Hartgers ML, Reeskamp LF, Balder JW, Rimbert A, Bazioti V, Wolters JC, Winkelmeijer M, Jansen HPG, Dallinga-Thie GM, Volta A, Huijkman N, Smit M, Kloosterhuis N, Koster M, Svendsen AF, van de Sluis B, Hovingh GK, Grefhorst A, Kuivenhoven JA", "protein_xref_pubmed", "31996024", "protein_xref_refseq", "NP_001297568" ], [ "Q8C3Q5-1", "Activity- and sleep-dependent regulation of tonic inhibition by Shisa7.", "Cell reports", "2021 Mar 23", "Wu K, Han W, Tian Q, Li Y, Lu W", "protein_xref_pubmed", "33761345", "protein_xref_refseq", "NP_001277220" ], [ 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The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen. \n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accessions to the UniProtKB Canonical accessions. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_protein_blacklisted_pmids_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/compiled/mouse_protein_blacklisted_pmids_uniprotkb.csv\n Name: mouse_protein_function_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_protein_function_refseq.csv\n Output Subdomain\n Name: mouse_protein_citations_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_protein_citations_refseq.csv\n Name: mouse_protein_citations_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_protein_citations_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"11937\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"30925\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1465\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"5285\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"30846\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"30925\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"11937\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/mouse_protein_citations_refseq.csv" }