{ "bcoid": "GLY_000227", "title": "Rat UniProtKB Xref ChEMBL", "description": "The Rat UniprotKB Xref ChEMBL contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_chembl.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tag": [ "Chembl cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30938-1...", "protein_xref..." ], [ "P30937-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30938-1", "protein_xref_chembl", "CHEMBL4318", "" ], [ "P30937-1", "protein_xref_chembl", "CHEMBL2096977", "" ], [ "P30936-1", "protein_xref_chembl", "CHEMBL3340", "" ], [ "P02764-1", "protein_xref_chembl", "CHEMBL3709434", "" ], [ "P02767-1", "protein_xref_chembl", "CHEMBL2151", "" ], [ "P43219-1", "protein_xref_chembl", "CHEMBL5001", "" ], [ "P31016-1", "protein_xref_chembl", "CHEMBL3797015", "" ], [ "Q62735-1", "protein_xref_chembl", "CHEMBL4105917", "" ], [ "Q62730-1", "protein_xref_chembl", "CHEMBL1914268", "" ], [ "Q9Z1Z1-1", "protein_xref_chembl", "CHEMBL4105946", "" ], [ "Q04666-1", "protein_xref_chembl", "CHEMBL4105998", "" ], [ "Q4FZV0-1", "protein_xref_chembl", "CHEMBL3431", "" ], [ "P14423-1", "protein_xref_chembl", "CHEMBL3686", "" ], [ "O88496-1", "protein_xref_chembl", "CHEMBL2744", "" ], [ "O35881-1", "protein_xref_chembl", "CHEMBL4295660", "" ], [ "P21961-1", "protein_xref_chembl", "CHEMBL4523202", "" ], [ "O35346-1", "protein_xref_chembl", "CHEMBL5773", "" ], [ "Q8CG09-1", "protein_xref_chembl", "CHEMBL5680", "" ], [ "P53790-1", "protein_xref_chembl", "CHEMBL5374", "" ], [ "Q9Z0Y8-1", "protein_xref_chembl", "CHEMBL5459", "" ], [ "Q6T3U3-1", "protein_xref_chembl", "CHEMBL5161", "" ], [ "P63059-1", "protein_xref_chembl", "CHEMBL4823", "" ], [ "P35411-1", "protein_xref_chembl", "CHEMBL2346491", "" ], [ "Q62976-1", "protein_xref_chembl", "CHEMBL5505", "" ], [ "P08683-1", "protein_xref_chembl", "CHEMBL4971", "" ], [ "P08689-1", "protein_xref_chembl", "CHEMBL4932", "" ], [ "Q66H76-1", "protein_xref_chembl", "CHEMBL5613", "" ], [ "Q6MGC4-1", "protein_xref_chembl", "CHEMBL2096", "" ], [ "Q9EQV9-1", "protein_xref_chembl", "CHEMBL4879512", "" ], [ "P30083-1", "protein_xref_chembl", "CHEMBL1955712", "" ], [ "P30082-1", "protein_xref_chembl", "CHEMBL4720", "" ], [ "P11497-1", "protein_xref_chembl", "CHEMBL2397", "" ], [ "P17425-1", "protein_xref_chembl", "CHEMBL2189", "" ], [ "O08590-1", "protein_xref_chembl", "CHEMBL4592", "" ], [ "P70597-1", "protein_xref_chembl", "CHEMBL5068", "" ], [ "P70596-1", "protein_xref_chembl", "CHEMBL2700", "" ], [ "Q6TEK4-1", "protein_xref_chembl", "CHEMBL4105870", "" ], [ "P14740-1", "protein_xref_chembl", "CHEMBL4653", "" ], [ "P16638-1", "protein_xref_chembl", "CHEMBL2745", "" ], [ "Q9JHI3-1", "protein_xref_chembl", "CHEMBL2073698", "" ], [ "P24062-1", "protein_xref_chembl", "CHEMBL1075098", "" ], [ "P00185-1", "protein_xref_chembl", "CHEMBL2922", "" ], [ "Q11205-1", "protein_xref_chembl", "CHEMBL3638362", "" ], [ "O88563-1", "protein_xref_chembl", "CHEMBL2073682", "" ], [ "D3ZJ25-1", "protein_xref_chembl", "CHEMBL3562161", "" ], [ "Q64194-1", "protein_xref_chembl", "CHEMBL2352", "" ], [ "P30553-1", "protein_xref_chembl", "CHEMBL3508", "" ], [ "P30551-1", "protein_xref_chembl", "CHEMBL2871", "" ], [ "P08413-1", "protein_xref_chembl", "CHEMBL2610", "" ], [ "P07943-1", "protein_xref_chembl", "CHEMBL2622", "" ], [ "Q05343-1", "protein_xref_chembl", "CHEMBL4431", "" ], [ "Q5RJP0-1", "protein_xref_chembl", "CHEMBL3421523", "" ], [ "P49864-1", "protein_xref_chembl", "CHEMBL4557", "" ], [ "Q08201-1", "protein_xref_chembl", "CHEMBL2073706", "" ], [ "P59215-1", "protein_xref_chembl", "CHEMBL4295785", "" ], [ "Q04589-1", "protein_xref_chembl", "CHEMBL4523276", "" ], [ "P16296-1", "protein_xref_chembl", "CHEMBL4105734", "" ], [ "Q06518-1", "protein_xref_chembl", "CHEMBL3051", "" ], [ "P63086-1", "protein_xref_chembl", "CHEMBL5233", "" ], [ "P22734-1", "protein_xref_chembl", "CHEMBL2372", "" ], [ "Q63664-1", "protein_xref_chembl", "CHEMBL4524131", "" ], [ "P43245-1", "protein_xref_chembl", "CHEMBL1075229", "" ], [ "Q62986-1", "protein_xref_chembl", "CHEMBL3021", "" ], [ "Q06496-1", "protein_xref_chembl", "CHEMBL4296024", "" ], [ "P48500-1", "protein_xref_chembl", "CHEMBL2176801", "" ], [ "Q09326-1", "protein_xref_chembl", "CHEMBL4879456", "" ], [ "P20291-1", "protein_xref_chembl", "CHEMBL1921661", "" ], [ "O70247-1", "protein_xref_chembl", "CHEMBL2176793", "" ], [ "P46002-1", "protein_xref_chembl", "CHEMBL4127", "" ], [ "Q63010-1", "protein_xref_chembl", "CHEMBL2366498", "" ], [ "Q63016-1", "protein_xref_chembl", "CHEMBL4149", "" ], [ "Q64541-1", "protein_xref_chembl", "CHEMBL2485", "" ], [ "P18292-1", "protein_xref_chembl", "CHEMBL3078", "" ], [ "P18298-1", "protein_xref_chembl", "CHEMBL2838", "" ], [ "P0C0W8-1", "protein_xref_chembl", "CHEMBL4888453", "" ], [ "P17708-1", "protein_xref_chembl", "CHEMBL3808", "" ], [ "Q63199-1", "protein_xref_chembl", "CHEMBL2417350", "" ], [ "P26684-1", "protein_xref_chembl", "CHEMBL4566", "" ], [ "P36633-1", "protein_xref_chembl", "CHEMBL4648", "" ], [ "Q6IE75-1", "protein_xref_chembl", "CHEMBL2331066", "" ], [ "P32577-1", "protein_xref_chembl", "CHEMBL4365", "" ], [ "Q9ESK8-1", "protein_xref_chembl", "CHEMBL4523667", "" ], [ "P26769-1", "protein_xref_chembl", "CHEMBL2958", "" ], [ "P21932-1", "protein_xref_chembl", "CHEMBL2095179", "" ] ] }, "readme": "Name\n - Rat UniProtKB Xref ChEMBL\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2019-09-06T14:06:38.955413\n\nModified on\n - 2022-09-26T09:04:48.033557\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniprotKB Xref ChEMBL contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to ChEMBL database accessions/identifiers. The dataset is derived from 2019-05 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - ChEMBL or ChEMBLdb is a manually curated chemical database of bioactive molecules with drug-like properties. \n\nDescription Domain\n Keywords\n - bioactivity\n - ChEMBL\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to ChEMBL database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_chembl.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/rat_protein_xref_chembl.csv\n Name: rat_protein_xref_chembl.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/rat_protein_xref_chembl.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1031\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1031\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/rat_protein_xref_chembl.csv" }