{ "bcoid": "GLY_000115", "title": "Human UniProtKB Xref OrthoDB", "description": "The Human UniProtKB Xref OrthoDB contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_orthodb.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tag": [ "Orthodb cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q96J66-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_orthodb", "312683at2759", "" ], [ "Q96J66-1", "protein_xref_orthodb", "3384185at2759", "" ], [ "Q96J65-1", "protein_xref_orthodb", "3384185at2759", "" ], [ "Q8NC06-1", "protein_xref_orthodb", "5402066at2759", "" ], [ "Q8NBW4-1", "protein_xref_orthodb", "51748at2759", "" ], [ "P40424-1", "protein_xref_orthodb", "3684468at2759", "" ], [ "P40425-1", "protein_xref_orthodb", "3684468at2759", "" ], [ "P40426-1", "protein_xref_orthodb", "3684468at2759", "" ], [ "P40429-1", "protein_xref_orthodb", "166436at2759", "" ], [ "P62873-1", "protein_xref_orthodb", "102097at2759", "" ], [ "Q9H2I8-1", "protein_xref_orthodb", "122995at2759", "" ], [ "H0YL14-1", "protein_xref_orthodb", "5395625at2759", "" ], [ "Q9GZS3-1", "protein_xref_orthodb", "5667at2759", "" ], [ "Q9BXR3-1", "protein_xref_orthodb", "5232452at2759", "" ], [ "Q5VVP1-1", "protein_xref_orthodb", "4838108at2759", "" ], [ "Q8N865-1", "protein_xref_orthodb", "5384802at2759", "" ], [ "A6NIR3-1", "protein_xref_orthodb", "1449795at2759", "" ], [ "Q86VY4-1", "protein_xref_orthodb", "5318522at2759", "" ], [ "Q86VY9-1", "protein_xref_orthodb", "5309875at2759", "" ], [ "Q9Y5S9-1", "protein_xref_orthodb", "36315at2759", "" ], [ "P19075-1", "protein_xref_orthodb", "5353560at2759", "" ], [ "Q96QE4-1", "protein_xref_orthodb", "4609371at2759", "" ], [ "Q99519-1", "protein_xref_orthodb", "2900690at2759", "" ], [ "O15417-1", "protein_xref_orthodb", "5401688at2759", "" ], [ "Q96RU7-1", "protein_xref_orthodb", "2937186at2759", "" ], [ "Q96RU3-1", "protein_xref_orthodb", "2995634at2759", "" ], [ "Q96RU2-1", "protein_xref_orthodb", "1423057at2759", "" ], [ "Q96RU8-1", "protein_xref_orthodb", "2937186at2759", "" ], [ "Q6ZRV2-1", "protein_xref_orthodb", "4260995at2759", "" ], [ "P16520-1", "protein_xref_orthodb", "102097at2759", "" ], [ "Q8NCJ5-1", "protein_xref_orthodb", "38145at2759", "" ], [ "Q9Y296-1", "protein_xref_orthodb", "275602at2759", "" ], [ "Q9Y297-1", "protein_xref_orthodb", "337075at2759", "" ], [ "Q9Y294-1", "protein_xref_orthodb", "1342948at2759", "" ], [ "Q9Y295-1", "protein_xref_orthodb", "146471at2759", "" ], [ "Q9UPN3-1", "protein_xref_orthodb", "5489926at2759", "" ], [ "Q6ICB4-1", "protein_xref_orthodb", "5483476at2759", "" ], [ "Q6ICB0-1", "protein_xref_orthodb", "151499at2759", "" ], [ "P17693-1", "protein_xref_orthodb", "3840485at2759", "" ], [ "O00507-1", "protein_xref_orthodb", "6206at2759", "" ], [ "O00505-1", "protein_xref_orthodb", "916229at2759", "" ], [ "O00501-1", "protein_xref_orthodb", "4040914at2759", "" ], [ "Q8IYD2-1", "protein_xref_orthodb", "884885at2759", "" ], [ "Q8IYD1-1", "protein_xref_orthodb", "5477300at2759", "" ], [ "Q8IYD9-1", "protein_xref_orthodb", "5403570at2759", "" ], [ "Q8IYD8-1", "protein_xref_orthodb", "12149at2759", "" ], [ "Q9H0H3-1", "protein_xref_orthodb", "5472491at2759", "" ], [ "Q8IVD9-1", "protein_xref_orthodb", "24949at2759", "" ], [ "P24903-1", "protein_xref_orthodb", "2900138at2759", "" ], [ "Q5M9N0-1", "protein_xref_orthodb", "5402841at2759", "" ], [ "Q8N7C0-1", "protein_xref_orthodb", "3325405at2759", "" ], [ "O00560-1", "protein_xref_orthodb", "5395964at2759", "" ], [ "Q9UPQ0-1", "protein_xref_orthodb", "6462at2759", "" ], [ "Q92552-1", "protein_xref_orthodb", "3109095at2759", "" ], [ "Q9NV23-1", "protein_xref_orthodb", "2913944at2759", "" ], [ "Q9NV29-1", "protein_xref_orthodb", "4234612at2759", "" ], [ "Q9UQ26-6", "protein_xref_orthodb", "2891597at2759", "" ], [ "P0C7I6-2", "protein_xref_orthodb", "4608485at2759", "" ], [ "Q5HYW2-1", "protein_xref_orthodb", "4640647at2759", "" ], [ "Q5HYW3-1", "protein_xref_orthodb", "4843488at2759", "" ], [ "Q9Y5J9-1", "protein_xref_orthodb", "2871701at2759", "" ], [ "Q8N8Q8-1", "protein_xref_orthodb", "5395681at2759", "" ], [ "P45984-1", "protein_xref_orthodb", "158564at2759", "" ], [ "Q06413-1", "protein_xref_orthodb", "448298at2759", "" ], [ "Q7Z5G4-1", "protein_xref_orthodb", "2873234at2759", "" ], [ "Q9Y5J6-1", "protein_xref_orthodb", "2872226at2759", "" ], [ "Q9Y5J7-1", "protein_xref_orthodb", "8465at2759", "" ], [ "P27469-1", "protein_xref_orthodb", "3869384at2759", "" ], [ "Q9H239-1", "protein_xref_orthodb", "2225278at2759", "" ], [ "Q9H237-1", "protein_xref_orthodb", "2957548at2759", "" ], [ "Q8NEQ5-1", "protein_xref_orthodb", "4642322at2759", "" ], [ "Q8NEQ6-1", "protein_xref_orthodb", "4641959at2759", "" ], [ "O75078-1", "protein_xref_orthodb", "5406290at2759", "" ], [ "Q9BSA4-1", "protein_xref_orthodb", "5393599at2759", "" ], [ "Q9C0D0-1", "protein_xref_orthodb", "2882458at2759", "" ], [ "Q14584-1", "protein_xref_orthodb", "4747146at2759", "" ], [ "P35052-1", "protein_xref_orthodb", "2939408at2759", "" ], [ "P16499-1", "protein_xref_orthodb", "5479253at2759", "" ], [ "Q9H7J1-1", "protein_xref_orthodb", "3059370at2759", "" ], [ "O60830-1", "protein_xref_orthodb", "179242at2759", "" ], [ "O60831-1", "protein_xref_orthodb", "2879141at2759", "" ], [ "O60832-1", "protein_xref_orthodb", "5472308at2759", "" ], [ "Q7LDG7-1", "protein_xref_orthodb", "4260488at2759", "" ], [ "Q8N587-1", "protein_xref_orthodb", "4746561at2759", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref OrthoDB\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2019-03-15T14:55:58.596936\n\nModified on\n - 2022-09-26T08:56:48.516313\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref OrthoDB contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to OrthoDB database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - OrthoDB is a comprehensive catalog of orthologs, i.e. descendants from a single gene of the last common ancestor of a specific phylogeny radiation termed level-of-orthology.\n\nDescription Domain\n Keywords\n - orthologs\n - OrthoDB\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OrthoDB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_xref_orthodb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_protein_xref_orthodb.csv\n Name: human_protein_xref_orthodb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_protein_xref_orthodb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"18733\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"10180\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/human_protein_xref_orthodb.csv" }