{ "bcoid": "GLY_000114", "title": "Mouse UniProtKB Xref OMA", "description": "The Mouse UniProtKB Xref OMA contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_oma.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tag": [ "Oma cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q8BH24-1...", "protein_xref..." ], [ "Q8BH27-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH24-1", "protein_xref_oma", "NLFLWAK", "" ], [ "Q8BH27-1", "protein_xref_oma", "YIGPNCN", "" ], [ "Q8BH26-1", "protein_xref_oma", "AYYIFEV", "" ], [ "Q80WT5-1", "protein_xref_oma", "SDQHLYQ", "" ], [ "B2RXV4-1", "protein_xref_oma", "VTYGIMT", "" ], [ "E9Q3P4-1", "protein_xref_oma", "EQPNEQH", "" ], [ "P03899-1", "protein_xref_oma", "RFPVKYY", "" ], [ "O35153-1", "protein_xref_oma", "MMESANS", "" ], [ "Q02853-1", "protein_xref_oma", "YWRFNPH", "" ], [ "P03893-1", "protein_xref_oma", "FHFWVPE", "" ], [ "Q6DYE8-1", "protein_xref_oma", "PMYKEFK", "" ], [ "P36536-1", "protein_xref_oma", "DWLYNGF", "" ], [ "Q9R092-1", "protein_xref_oma", "FFDAYHD", "" ], [ "Q9QYH9-1", "protein_xref_oma", "HYYLYSK", "" ], [ "P52479-1", "protein_xref_oma", "TPRTCDS", "" ], [ "Q9QYH6-1", "protein_xref_oma", "PNPMAWQ", "" ], [ "Q08AU7-1", "protein_xref_oma", "HLSWGNF", "" ], [ "O35309-1", "protein_xref_oma", "IYAQIPE", "" ], [ "Q80YU0-1", "protein_xref_oma", "GHRALTC", "" ], [ "Q61216-1", "protein_xref_oma", "NHLGYGE", "" ], [ "Q5SRT8-1", "protein_xref_oma", "PAGCFDS", "" ], [ "P70412-1", "protein_xref_oma", "CEMEYNS", "" ], [ "P10852-1", "protein_xref_oma", "APFMLWD", "" ], [ "P70419-1", "protein_xref_oma", "NPLFKMC", "" ], [ "Q9EP78-1", "protein_xref_oma", "MNKVICS", "" ], [ "Q9EP79-1", "protein_xref_oma", "ISMYERI", "" ], [ "Q3URK3-1", "protein_xref_oma", "VKEQLMH", "" ], [ "Q9EP72-1", "protein_xref_oma", "EMENMQM", "" ], [ "Q9EP73-1", "protein_xref_oma", "CCMISYG", "" ], [ "Q9EP71-1", "protein_xref_oma", "HTDCVQR", "" ], [ "Q9EP75-1", "protein_xref_oma", "NGVCNEV", "" ], [ "Q8VF62-1", "protein_xref_oma", "AHMGNIM", "" ], [ "Q8CHS4-1", "protein_xref_oma", "QHPELWT", "" ], [ "S4R213-1", "protein_xref_oma", "NDTILWT", "" ], [ "Q91VV4-1", "protein_xref_oma", "CLFKNRV", "" ], [ "P53702-1", "protein_xref_oma", "KARFWLF", "" ], [ "O08911-1", "protein_xref_oma", "PYVAAYH", "" ], [ "Q80WC9-1", "protein_xref_oma", "NGNVICC", "" ], [ "O08912-1", "protein_xref_oma", "VAEVWMC", "" ], [ "O08915-1", "protein_xref_oma", "QQHERNV", "" ], [ "O08914-1", "protein_xref_oma", "GMQPWKY", "" ], [ "O08917-1", "protein_xref_oma", "ERQYDSE", "" ], [ "O08918-1", "protein_xref_oma", "CEDMMSS", "" ], [ "Q80WC1-1", "protein_xref_oma", "PKVKKVM", "" ], [ "Q80WC7-1", "protein_xref_oma", "DVFGDIW", "" ], [ "Q9JHY4-1", "protein_xref_oma", "MAQAIFW", "" ], [ "Q9D0M3-1", "protein_xref_oma", "WVKKFKW", "" ], [ "Q9CQA0-1", "protein_xref_oma", "CTLPLDI", "" ], [ "B8JJZ7-1", "protein_xref_oma", "HIVNECM", "" ], [ "Q8BYW1-1", "protein_xref_oma", "HRASTYD", "" ], [ "G5E8Q8-1", "protein_xref_oma", "VADTWFI", "" ], [ "Q66GT5-1", "protein_xref_oma", "KISSRRW", "" ], [ "Q8BTJ4-1", "protein_xref_oma", "NNITTWL", "" ], [ "P59708-1", "protein_xref_oma", "HQPDKMV", "" ], [ "Q3TX08-1", "protein_xref_oma", "MKCCHEM", "" ], [ "E9PYR1-1", "protein_xref_oma", "LHTLCYD", "" ], [ "P04760-1", "protein_xref_oma", "CVDACNL", "" ], [ "P59808-1", "protein_xref_oma", "SMSDWLI", "" ], [ "F8VQK3-1", "protein_xref_oma", "SLMLHYF", "" ], [ "Q9R1N9-1", "protein_xref_oma", "DKCSKFQ", "" ], [ "A2AT96-1", "protein_xref_oma", "NHYCCDI", "" ], [ "Q9D387-1", "protein_xref_oma", "HTVTRIM", "" ], [ "Q9D516-1", "protein_xref_oma", "RNMSVWD", "" ], [ "Q9D517-1", "protein_xref_oma", "PTIGWAW", "" ], [ "Q9D513-1", "protein_xref_oma", "IYLKFVV", "" ], [ "Q9D519-1", "protein_xref_oma", "SEIQIVC", "" ], [ "Q8K2M0-1", "protein_xref_oma", "HTIRGKP", "" ], [ "Q8K2M3-1", "protein_xref_oma", "WKCVCYG", "" ], [ "P21661-1", "protein_xref_oma", "FHCEAGT", "" ], [ "F6ZPB0-1", "protein_xref_oma", "LNSGWPH", "" ], [ "Q9R210-1", "protein_xref_oma", "XELEMQA", "" ], [ "Q8BLQ7-1", "protein_xref_oma", "ANWSQKE", "" ], [ "Q8BWU3-1", "protein_xref_oma", "ACISQVV", "" ], [ "Q7TQ33-1", "protein_xref_oma", "AHIGQCQ", "" ], [ "A0A0G2JEU8-1", "protein_xref_oma", "PATPCCV", "" ], [ "Q8CB67-1", "protein_xref_oma", "HACCAQP", "" ], [ "Q80VU4-1", "protein_xref_oma", "HWISECK", "" ], [ "Q8VC03-1", "protein_xref_oma", "SVWDWNR", "" ], [ "Q8VC04-1", "protein_xref_oma", "CSYLCHS", "" ], [ "P22727-1", "protein_xref_oma", "EWTNCNC", "" ], [ "Q8BGW1-1", "protein_xref_oma", "NYSCEGS", "" ], [ "Q8BGW0-1", "protein_xref_oma", "MMRRYEG", "" ], [ "Q8BGW3-1", "protein_xref_oma", "AEKCSTY", "" ], [ "Q8BGW2-1", "protein_xref_oma", "CSGLKMG", "" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref OMA\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2022-09-26T08:56:48.518389\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref OMA contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to OMA database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The OMA (Orthologous MAtrix) project is a method and database for the inference of orthologs among complete genomes.\n\nDescription Domain\n Keywords\n - orthologs\n - OMA\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OMA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_xref_oma.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_protein_xref_oma.csv\n Name: mouse_protein_xref_oma.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/mouse_protein_xref_oma.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"20381\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"20395\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/mouse_protein_xref_oma.csv" }