{ "bcoid": "GLY_000108", "title": "Human UniProtKB Xref KEGG PATHWAY", "description": "The Human UniProtKB Xref KEGG PATHWAY contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_kegg.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tag": [ "Kegg Pathway cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q96J66-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_kegg", "hsa:5313", "" ], [ "Q96J66-1", "protein_xref_kegg", "hsa:85320", "" ], [ "Q96J65-1", "protein_xref_kegg", "hsa:94160", "" ], [ "P40424-1", "protein_xref_kegg", "hsa:5087", "" ], [ "P40425-1", "protein_xref_kegg", "hsa:5089", "" ], [ "P40426-1", "protein_xref_kegg", "hsa:5090", "" ], [ "P40429-1", "protein_xref_kegg", "hsa:23521", "" ], [ "Q9H2I8-1", "protein_xref_kegg", "hsa:83938", "" ], [ "H0YL14-1", "protein_xref_kegg", "hsa:90120", "" ], [ "Q5VVP1-1", "protein_xref_kegg", "hsa:389730", "" ], [ "Q8N865-1", "protein_xref_kegg", "hsa:136895", "" ], [ "A6NIR3-1", "protein_xref_kegg", "hsa:729092", "" ], [ "Q86VY4-1", "protein_xref_kegg", "hsa:85453", "" ], [ "Q86VY9-1", "protein_xref_kegg", "hsa:114801", "" ], [ "Q9Y5S9-1", "protein_xref_kegg", "hsa:9939", "" ], [ "P19075-1", "protein_xref_kegg", "hsa:7103", "" ], [ "Q99519-1", "protein_xref_kegg", "hsa:4758", "" ], [ "O15417-1", "protein_xref_kegg", "hsa:84629", "" ], [ "Q96RU7-1", "protein_xref_kegg", "hsa:57761", "" ], [ "Q96RU3-1", "protein_xref_kegg", "hsa:23048", "" ], [ "Q96RU2-1", "protein_xref_kegg", "hsa:57646", "" ], [ "Q96RU8-1", "protein_xref_kegg", "hsa:10221", "" ], [ "Q6ZRV2-1", "protein_xref_kegg", "hsa:286077", "" ], [ "P16520-1", "protein_xref_kegg", "hsa:2784", "" ], [ "Q8NCJ5-1", "protein_xref_kegg", "hsa:84926", "" ], [ "Q9Y296-1", "protein_xref_kegg", "hsa:51399", "" ], [ "Q9Y297-1", "protein_xref_kegg", "hsa:8945", "" ], [ "Q9Y294-1", "protein_xref_kegg", "hsa:25842", "" ], [ "Q9Y295-1", "protein_xref_kegg", "hsa:4733", "" ], [ "Q6ICB4-1", "protein_xref_kegg", "hsa:150368", "" ], [ "Q6ICB0-1", "protein_xref_kegg", "hsa:27351", "" ], [ "P17693-1", "protein_xref_kegg", "hsa:3135", "" ], [ "O00507-1", "protein_xref_kegg", "hsa:8287", "" ], [ "O00505-1", "protein_xref_kegg", "hsa:3839", "" ], [ "O00501-1", "protein_xref_kegg", "hsa:7122", "" ], [ "Q8IYD2-1", "protein_xref_kegg", "hsa:55220", "" ], [ "Q8IYD1-1", "protein_xref_kegg", "hsa:23708", "" ], [ "Q8IYD9-1", "protein_xref_kegg", "hsa:162681", "" ], [ "Q8IYD8-1", "protein_xref_kegg", "hsa:57697", "" ], [ "Q9H0H3-1", "protein_xref_kegg", "hsa:64410", "" ], [ "Q8IVD9-1", "protein_xref_kegg", "hsa:23386", "" ], [ "P24903-1", "protein_xref_kegg", "hsa:1572", "" ], [ "Q5M9N0-1", "protein_xref_kegg", "hsa:339965", "" ], [ "Q8N7C0-1", "protein_xref_kegg", "hsa:440699", "" ], [ "Q9NV23-1", "protein_xref_kegg", "hsa:55301", "" ], [ "Q9NV29-1", "protein_xref_kegg", "hsa:55273", "" ], [ "P0C7I6-2", "protein_xref_kegg", "hsa:126075", "" ], [ "P0C7I0-1", "protein_xref_kegg", "hsa:392188", "" ], [ "Q5HYW2-1", "protein_xref_kegg", "hsa:340527", "" ], [ "Q5HYW3-1", "protein_xref_kegg", "hsa:340526", "" ], [ "Q9Y5J9-1", "protein_xref_kegg", "hsa:26521", "" ], [ "P45984-1", "protein_xref_kegg", "hsa:5601", "" ], [ "Q7Z5G4-1", "protein_xref_kegg", "hsa:51125", "" ], [ "Q9Y5J6-1", "protein_xref_kegg", "hsa:26515", "" ], [ "Q9Y5J7-1", "protein_xref_kegg", "hsa:26520", "" ], [ "P27469-1", "protein_xref_kegg", "hsa:50486", "" ], [ "Q9H239-1", "protein_xref_kegg", "hsa:79148", "" ], [ "Q9H237-1", "protein_xref_kegg", "hsa:64840", "" ], [ "Q8NEQ5-1", "protein_xref_kegg", "hsa:128346", "" ], [ "Q9H7J1-1", "protein_xref_kegg", "hsa:90673", "" ], [ "O60831-1", "protein_xref_kegg", "hsa:11230", "" ], [ "O60832-1", "protein_xref_kegg", "hsa:1736", "" ], [ "Q7LDG7-1", "protein_xref_kegg", "hsa:10235", "" ], [ "P17900-1", "protein_xref_kegg", "hsa:2760", "" ], [ "Q9NPI9-1", "protein_xref_kegg", "hsa:3773", "" ], [ "Q9NPI8-1", "protein_xref_kegg", "hsa:2188", "" ], [ "Q9NPI5-1", "protein_xref_kegg", "hsa:27231", "" ], [ "Q9NPI7-1", "protein_xref_kegg", "hsa:51315", "" ], [ "Q9NPI6-1", "protein_xref_kegg", "hsa:55802", "" ], [ "Q9NPI1-1", "protein_xref_kegg", "hsa:29117", "" ], [ "Q9NPI0-1", "protein_xref_kegg", "hsa:51524", "" ], [ "Q05397-1", "protein_xref_kegg", "hsa:5747", "" ], [ "Q96LT9-1", "protein_xref_kegg", "hsa:55599", "" ], [ "Q96LT6-1", "protein_xref_kegg", "hsa:148304", "" ], [ "Q96LT7-1", "protein_xref_kegg", "hsa:203228", "" ], [ "Q96LT4-1", "protein_xref_kegg", "hsa:142891", "" ], [ "Q6ZTR7-1", "protein_xref_kegg", "hsa:339145", "" ], [ "A6NLE4-1", "protein_xref_kegg", "hsa:644994", "" ], [ "P62280-1", "protein_xref_kegg", "hsa:6205", "" ], [ "Q10571-1", "protein_xref_kegg", "hsa:4330", "" ], [ "Q15532-1", "protein_xref_kegg", "hsa:6760", "" ], [ "Q8NFV5-1", "protein_xref_kegg", "hsa:285955", "" ], [ "Q96AQ8-1", "protein_xref_kegg", "hsa:63933", "" ], [ "Q96AQ9-1", "protein_xref_kegg", "hsa:348487", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref KEGG PATHWAY\n\nVersion\n - v-2.4.1\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2022-09-26T08:56:48.493813\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref KEGG PATHWAY contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to KEGG PATHWAY database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction, reaction and relation networks.\n\nDescription Domain\n Keywords\n - pathways\n - reactions\n - KEGG Pathway\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to KEGG PATHWAY database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2024_02_13/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_xref_kegg.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_protein_xref_kegg.csv\n Name: human_protein_xref_kegg.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/human_protein_xref_kegg.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"18085\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"18254\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.4.1/reviewed/human_protein_xref_kegg.csv" }