{
    "assessed_biomarker_entity": "MINT25 gene promoter methylation (MINT25)",
    "assessed_entity_type": "gene",
    "components": {
        "protein": [
            {
                "accession": "Q6P1J9-1",
                "name": "Parafibromin",
                "evidence": [
                    {
                        "id": "GLY_000625",
                        "database": "GlyGen",
                        "url": "https://data.glygen.org/GLY_000625"
                    },
                    {
                        "id": "19375421",
                        "database": "PubMed",
                        "url": "https://glygen.org/publication/PubMed/19375421"
                    }
                ]
            }
        ],
        "glycan": []
    },
    "instances": [
        {
            "best_biomarker_type": "diagnostic",
            "status": "increased methylation",
            "notes": "No current UniProtKB record for MINT25|Possible synonym: APBA25|Amyloid-beta A4 precursor protein-binding family A member 25",
            "literature_evidence": "MINT25 methylation had the best sensitivity (90%), specificity (96%), and area under the receiver operating characteristic curve (0.961) in terms of tumor detection in gastric washes. These findings suggest MINT25 is a sensitive and specific marker for screening in gastric cancer. Aberrant DNA methylation is an early and frequent process in gastric carcinogenesis and could be useful for detection of gastric neoplasia. We hypothesized that methylation analysis of DNA recovered from gastric washes could be used to detect gastric cancer. [PMID:19375421]",
            "loinc_code": "",
            "tissue": {
                "name": "stomach",
                "namespace": "UBERON",
                "id": "0000945",
                "url": "http://purl.obolibrary.org/obo/UBERON_0000945"
            },
            "disease": {
                "disease_id": "DOID:10534",
                "recommended_name": {
                    "id": "DOID:10534",
                    "resource": "Disease Ontology",
                    "url": "http://disease-ontology.org/term/DOID:10534",
                    "name": "stomach cancer",
                    "description": "A gastrointestinal system cancer that is located_in the stomach."
                },
                "synonyms": [
                    {
                        "id": "DOID:10534",
                        "resource": "Disease Ontology",
                        "url": "http://disease-ontology.org/term/DOID:10534",
                        "name": "gastric cancer",
                        "description": ""
                    },
                    {
                        "id": "DOID:10534",
                        "resource": "Disease Ontology",
                        "url": "http://disease-ontology.org/term/DOID:10534",
                        "name": "gastric neoplasm",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "gastric cancer",
                        "description": "A primary or metastatic malignant neoplasm involving the stomach."
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "gastric neoplasm",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "Ca lesser curvature - stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "cancer of stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "gastric cancer",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "gastric cancer risk after h. pylori infection",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "gastric cancer, somatic",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant gastric neoplasm",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant gastric tumor",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant gastric tumour",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant neoplasm of lesser curve of stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant neoplasm of stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant neoplasm of the stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant stomach neoplasm",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant tumor of body of stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant tumor of greater curve of stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant tumor of lesser curve of stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant tumor of stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant tumor of the stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant tumour of body of stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant tumour of greater curve of stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant tumour of lesser curve of stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant tumour of stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant tumour of the stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "stomach cancer",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "Ca body - stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "ca greater curvature of stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "malignant neoplasm of body of stomach",
                        "description": ""
                    },
                    {
                        "id": "MONDO:0001056",
                        "resource": "MONDO",
                        "url": "https://monarchinitiative.org/disease/MONDO:0001056",
                        "name": "gastric cancer, intestinal",
                        "description": ""
                    },
                    {
                        "id": "MIM:613659",
                        "resource": "MIM",
                        "url": "https://www.omim.org/entry/613659",
                        "name": "Gastric cancer",
                        "description": "Gastric cancer"
                    }
                ]
            },
            "evidence": [
                {
                    "id": "GLY_000625",
                    "database": "GlyGen",
                    "url": "https://data.glygen.org/GLY_000625"
                },
                {
                    "id": "19375421",
                    "database": "PubMed",
                    "url": "https://glygen.org/publication/PubMed/19375421"
                }
            ]
        }
    ],
    "publication": [
        {
            "title": "Sensitive and specific detection of early gastric cancer with DNA methylation analysis of gastric washes.",
            "journal": "Gastroenterology",
            "authors": "Watanabe Y, Kim HS, Castoro RJ, Chung W, Estecio MR, Kondo K, Guo Y, Ahmed SS, Toyota M, Itoh F, Suk KT, Cho MY, Shen L, Jelinek J, Issa JP",
            "date": "2009",
            "reference": [
                {
                    "type": "PubMed",
                    "id": "19375421",
                    "url": "https://glygen.org/publication/PubMed/19375421"
                }
            ],
            "evidence": [
                {
                    "id": "GLY_000625",
                    "database": "GlyGen",
                    "url": "https://data.glygen.org/GLY_000625"
                }
            ]
        }
    ],
    "evidence": [
        {
            "id": "GLY_000625",
            "database": "GlyGen",
            "url": "https://data.glygen.org/GLY_000625"
        },
        {
            "id": "19375421",
            "database": "PubMed",
            "url": "https://glygen.org/publication/PubMed/19375421"
        }
    ],
    "biomarker_id": "A0358",
    "aclist": [
        "Q6P1J9-1"
    ],
    "crossref": [],
    "section_stats": [
        {
            "table_id": "instances",
            "table_stats": [
                {
                    "field": "total",
                    "count": 1
                }
            ],
            "sort_fields": [
                "best_biomarker_type",
                "status",
                "notes",
                "literature_evidence",
                "loinc_code",
                "tissue.name",
                "tissue.namespace",
                "tissue.id",
                "tissue.url",
                "disease.disease_id"
            ]
        },
        {
            "table_id": "components",
            "table_stats": [
                {
                    "field": "total",
                    "count": 2
                }
            ],
            "sort_fields": []
        },
        {
            "table_id": "publication",
            "table_stats": [
                {
                    "field": "total",
                    "count": 1
                }
            ],
            "sort_fields": [
                "title",
                "journal",
                "authors",
                "date"
            ]
        }
    ]
}