{
    "object_id": "https://biocomputeobject.org/GLY_000487/v-2.4.1",
    "spec_version": "1.3.0",
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        {
            "extension_schema": "https://www.w3id.org/biocompute/extension_domain/1.2.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Hepatitis c virus (isolate h)",
                        "category_name": "species"
                    },
                    {
                        "category_value": "Protein",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "disease",
                        "category_name": "tag"
                    },
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                ]
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    ],
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "name": "HCV1a Protein Diseases",
        "contributors": [
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jeet Vora",
                "email": "jeetvora@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Robel Kahsay",
                "email": "rykahsay@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Karina Martinez",
                "email": "karinamartinez@gwu.edu"
            },
            {
                "name": "Luke Johnson",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "luke.johnson@email.gwu.edu"
            },
            {
                "name": "Urnisha Bhuiyan",
                "affiliation": "The George Washington University",
                "contribution": [
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                ],
                "email": "sbhuiyan28@email.gwu.edu"
            },
            {
                "name": "Cyrus Au-Yeung",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "cyruschauyeung@gwu.edu"
            },
            {
                "name": "Jingyue Wu",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "jingyue.wu@email.gwu.edu"
            }
        ],
        "created": "2020-04-29T16:14:08.766000",
        "modified": "2022-09-26T09:05:56.486763",
        "version": "v-2.4.1"
    },
    "description_domain": {
        "keywords": [
            "Hepatitis C",
            "Liver Cirrhosis",
            "Hepatocellular Carcinoma",
            "disease",
            "HCV"
        ],
        "pipeline_steps": [
            {
                "name": "make-protein-dataset.py",
                "step_number": 1,
                "version": "",
                "input_list": [],
                "output_list": [],
                "prerequisite": [],
                "description": "The script extracts the UniProtKB canonical accessions, database name, database ID and DOID from the input file as a dataset in a csv format"
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "manual",
        "software_prerequisites": [
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                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py",
                    "filename": "make-protein-dataset.py"
                }
            }
        ]
    },
    "parametric_domain": [
        {
            "step": "",
            "param": "",
            "value": ""
        }
    ],
    "usability_domain": [
        "The Hepatitis C virus (genotype 1a, isolate H) Protein Diseases dataset contains disease caused by hcv1a virus [taxid:11108] which is Hepatitis C, Liver Cirrhosis and Hepatocellular carcinoma and is mapped to all UniProtKB canonical accessions. The dataset contains Hepatitis C, Liver Cirrhosis and Hepatocellular carcinoma disease ontology ID and GlyGen dataset ID. The input file for this dataset is compiled by GlyGen. If you use this dataset please give proper attribution to GlyGen."
    ],
    "etag": "cb95348958da52a7db0537e9e3892242",
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "filename": "hcv1a_protein_disease_glygen.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.4.1/compiled/hcv1a_protein_disease_glygen.csv"
                }
            }
        ],
        "output_subdomain": [
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/hcv1a_protein_disease_glygen.csv",
                    "filename": "hcv1a_protein_disease_glygen.csv"
                }
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.4.1/reviewed/hcv1a_protein_disease_glygen.stat.csv",
                    "filename": "hcv1a_protein_disease_glygen.stat.csv"
                }
            }
        ]
    },
    "error_domain": {
        "empirical_error": {},
        "algorithmic_error": {}
    }
}