>>Priority reported 1|GLYG-1153|Implement API changes for batch search feedback 1|GLYG-1631|API changes for abundance data 1|GLYG-1625|Search extension to support compositions strings in global search 1|GLYG-1626|Search extension to support compositions strings in glycan simple search 1|GLYG-1650|glycan ID namespace init api changes >>Priority not reported 1|GLYG-1630|API changes for search result explaination function 1|GLYG-XXXX|https://api.tst.glygen.org/protein/detail/P0DTC2-1 1|GLYG-XXXX|isoform alignment for O75531-1 1|GLYG-1639|API changes for glycan category in protein in global search result >>Priorty not reported with blocker 0|GLYG-1634|API changes for reaction data 0|GLYG-1637|API changes fro glycan pathway information 0|GLYG-1629|Implement new use case API >> 1|GLYG-xxxx|New usecase API: give N-linked sites with SNV within 3 aa of Asn 1|GLYG-xxxx|New usecase API: give proteins & sites with Cys or a pattern at +X of a glycosite 1|GLYG-xxxx|Default values for enums in supersearch 1|GLYG-xxxx|Make glycation to be enum on supersearch init (1.10.3 API release) 1|GLYG-xxxx|Add protein and site information for the expression section of the publication 1|GLYG-xxxx|Consider empty abundance entries in publications/expression 1|GLYG-xxxx|All condition should appear in the formula for scoring explanation 1|GLYG-1641|API changes for toleranze input on site search (not clear, maybe doable now) 1|GLYG-1429|Evalutation of implementation of Asynchronous API calls 0|GLYG-1229|Discuss data caching and cleanup with Dacian 1|GLYG-1638|API changes for multi concept supersearch 1|GLYG-xxxx|Bionic download is not right, remove ID and make it unique 1|GLYG-xxxx|Bionic sequencs should not have Xxx (check next data iteration update) >>Now I am not giving bionic sequences if composition contains Xxx 1|GLYG-xxxx|recover term value by removing escapes when doing global search 1|GLYG-xxxx|add "Binding Glycans" section for both protein and glycoprotein in the globalsearch summary table 1|GLYG-xxxx|make neighbor categories consistent with snv_flag,glycosylation_flag .... 1|GLYG-xxxx|check this site query, and make sure up_seq interpretation is right 1|GLYG-xxxx|grits and glycowworkbench download issues 1|GLYG-xxxx|change upstream/downstream indexes (longest pep query is 8) 1|GLYG-xxxx|stop taking regular expressions (take like 2|TXR) 1|GLYG-XXX|try to find a non-glycoprotein interacting with a glycan 1|GLYG-XXX|byonic download has a problem (try searching with mass range 700-2030) 1|GLYG-XXX|protein/site search/list has a problem 1|GLYG-XXX|descripancy on the result number vs shown on yellow labels for glycan 1|GLYG-XXX|supersearch_init is not working 1|GLYG-XXX|redundant annotation for P07202-1 1|GLYG-XXX|Super search init doesn't contain "neighbors.categories" -> label "Neighbor Type" 1|GLYG-XXX|q.1.json not working properly 1|GLYG-XXX|q.2.json, why is P02545-1 : 613 not found? 1|GLYG-XXX|q.3.json, why P61073-1 site 18 in the result. 1|GLYG-XXX|https://beta-api.glygen.org/idmapping/search/?query='{"input_idlist": ["","F6R114","F1LYV1-1","Q9HB96-1","F7C9T6"],"input_namespace": "UniProtKB","recordtype": "protein","output_namespace": "PDB"}' 1|GLYG-XXX|In the mapper init api example for UniProtKB namespace contains empty string. Please look at the example below, https://api.tst.glygen.org/idmapping/search_init?query={} "example_id_list": [ "", "F6R114", "F1LYV1-1", "Q9HB96-1", "F7C9T6" ] 1|GLYG-XXX|please have a look at the first result object in this site list page: It says "phosphorylation": "no", "snv": "no" but in the contribute section of the score they still have frequency "1.0". The same issue applies to more results on that page. https://beta-api.glygen.org//supersearch/list/?query={%22id%22:%22e69f37c85d2fd9d63645292710ced4b9%22} 1|GLYG-XXX|global search using "N-acetyllactosamine type 2" does not work 0|GLYG-XXX|publication page (make tissue objects in glycan same as protein protein expression),and change "expression" property to "glycan_expression" 0|GLYG-XXX|allow accepting timestamp details (hr:mm:ss) and give format in the example 0|GLYG-XXX|